starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/bin:/gnu/store/99c25918hl9pihix8hparmc96q6zrpwy-tar-1.34/bin:/gnu/store/l0yga4lrwwf74rz7fb0dadglg27ajpsx-gzip-1.10/bin:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/bin:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/bin:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/bin:/gnu/store/h0rx6y95zin61fp5wlyjly4g9j2hma18-diffutils-3.8/bin:/gnu/store/7j8j7m0kgb7kv2fc18qvrdj7gs3jc4mx-patch-2.7.6/bin:/gnu/store/x4yglk9pn2s2ixl1b4lj151bd2yvlgww-findutils-4.8.0/bin:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/bin:/gnu/store/cnwr7widbi6470kfyb13krx46kz5anmy-sed-4.8/bin:/gnu/store/bx47clwnxn51m7jdwfimz4lw2fh8g21v-grep-3.6/bin:/gnu/store/9a0cjh929maqvkxn3inv6jqbxn72fkx0-coreutils-8.32/bin:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/bin:/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin:/gnu/store/4bzvr16pyax9224v9r72rqxswj9931sb-ld-wrapper-0/bin:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/bin:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/sbin' environment variable `R_LIBS_SITE' set to `/gnu/store/h0n8f70hqc3xlyvnwadp1xw3gixcsbz6-r-lattice-0.20-45/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include/c++:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include' environment variable `LIBRARY_PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/lib:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/lib:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/lib:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/lib:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/lib:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/lib:/gnu/store/1s4k8h3h1ka9za4yzg0dfjnlhab5k14p-glibc-2.33-static/lib:/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' Matrix/ Matrix/NAMESPACE Matrix/ChangeLog Matrix/.Rinstignore Matrix/LICENCE Matrix/data/ Matrix/data/USCounties.R Matrix/data/datalist Matrix/data/KNex.R Matrix/data/CAex.R Matrix/data/wrld_1deg.R Matrix/man/ Matrix/man/printSpMatrix.Rd Matrix/man/externalFormats.Rd Matrix/man/compMatrix-class.Rd Matrix/man/band.Rd Matrix/man/expand.Rd Matrix/man/all.equal-methods.Rd Matrix/man/nnzero.Rd Matrix/man/Matrix-class.Rd Matrix/man/lsyMatrix-class.Rd Matrix/man/Hilbert.Rd Matrix/man/ldenseMatrix-class.Rd Matrix/man/dmperm.Rd Matrix/man/solve-methods.Rd Matrix/man/ddenseMatrix-class.Rd Matrix/man/drop0.Rd Matrix/man/chol2inv-methods.Rd Matrix/man/forceSymmetric.Rd Matrix/man/all-methods.Rd Matrix/man/SparseM-conv.Rd Matrix/man/Subassign-methods.Rd Matrix/man/Cholesky.Rd Matrix/man/rep2abI.Rd Matrix/man/dMatrix-class.Rd Matrix/man/Cholesky-class.Rd Matrix/man/Matrix.Rd Matrix/man/bandSparse.Rd Matrix/man/dtpMatrix-class.Rd Matrix/man/facmul.Rd Matrix/man/sparseMatrix.Rd Matrix/man/condest.Rd Matrix/man/ngeMatrix-class.Rd Matrix/man/dtRMatrix-class-def.Rd Matrix/man/colSums.Rd 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Matrix/R/dtrMatrix.R Matrix/R/kronecker.R Matrix/R/symmetricMatrix.R Matrix/R/lsCMatrix.R Matrix/MD5 Matrix/inst/ Matrix/inst/test-tools-1.R Matrix/inst/test-tools.R Matrix/inst/Copyrights Matrix/inst/doc/ Matrix/inst/doc/Comparisons.R Matrix/inst/doc/Comparisons.Rnw Matrix/inst/doc/sparseModels.pdf Matrix/inst/doc/Introduction.pdf Matrix/inst/doc/Design-issues.pdf Matrix/inst/doc/Comparisons.pdf Matrix/inst/doc/sparseModels.R Matrix/inst/doc/Intro2Matrix.pdf Matrix/inst/doc/Announce.txt Matrix/inst/doc/Design-issues.Rnw Matrix/inst/doc/Introduction.R Matrix/inst/doc/Design-issues.R Matrix/inst/doc/Intro2Matrix.Rnw Matrix/inst/doc/Introduction.Rnw Matrix/inst/doc/sparseModels.Rnw Matrix/inst/doc/Intro2Matrix.R Matrix/inst/doc/SuiteSparse/ Matrix/inst/doc/SuiteSparse/SPQR.txt Matrix/inst/doc/SuiteSparse/SuiteSparse_config.txt Matrix/inst/doc/SuiteSparse/CHOLMOD.txt Matrix/inst/doc/SuiteSparse/COLAMD.txt Matrix/inst/doc/SuiteSparse/AMD.txt Matrix/inst/doc/SuiteSparse/UserGuides.txt Matrix/inst/test-tools-Matrix.R Matrix/inst/include/ Matrix/inst/include/Matrix.h Matrix/inst/include/cholmod.h Matrix/inst/include/Matrix_stubs.c Matrix/inst/external/ Matrix/inst/external/utm300.rua Matrix/inst/external/lund_a.mtx Matrix/inst/external/CAex_slots.rda Matrix/inst/external/USCounties_slots.rda Matrix/inst/external/test3comp.rda Matrix/inst/external/pores_1.mtx Matrix/inst/external/symW.rda Matrix/inst/external/KNex_slots.rda Matrix/inst/external/jgl009.mtx Matrix/inst/external/symA.rda Matrix/inst/external/lund_a.rsa Matrix/inst/external/Z_NA_rnk.rds Matrix/inst/external/wrong.mtx Matrix/inst/external/wrld_1deg_slots.rda Matrix/inst/NEWS.Rd Matrix/inst/Doxyfile Matrix/inst/po/ Matrix/inst/po/ko/ Matrix/inst/po/ko/LC_MESSAGES/ Matrix/inst/po/ko/LC_MESSAGES/Matrix.mo Matrix/inst/po/ko/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/fr/ Matrix/inst/po/fr/LC_MESSAGES/ Matrix/inst/po/fr/LC_MESSAGES/Matrix.mo Matrix/inst/po/fr/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/it/ Matrix/inst/po/it/LC_MESSAGES/ Matrix/inst/po/it/LC_MESSAGES/Matrix.mo Matrix/inst/po/it/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/de/ Matrix/inst/po/de/LC_MESSAGES/ Matrix/inst/po/de/LC_MESSAGES/Matrix.mo Matrix/inst/po/de/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/pl/ Matrix/inst/po/pl/LC_MESSAGES/ Matrix/inst/po/pl/LC_MESSAGES/Matrix.mo Matrix/inst/po/pl/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/lt/ Matrix/inst/po/lt/LC_MESSAGES/ Matrix/inst/po/lt/LC_MESSAGES/Matrix.mo Matrix/inst/po/lt/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/en@quot/ Matrix/inst/po/en@quot/LC_MESSAGES/ Matrix/inst/po/en@quot/LC_MESSAGES/Matrix.mo Matrix/inst/po/en@quot/LC_MESSAGES/R-Matrix.mo Matrix/po/ Matrix/po/lt.po Matrix/po/R-lt.po Matrix/po/R-Matrix.pot Matrix/po/Matrix.pot Matrix/po/R-ko.po Matrix/po/update-me.sh Matrix/po/pl.po Matrix/po/it.po Matrix/po/ko.po Matrix/po/R-pl.po Matrix/po/R-de.po Matrix/po/R-it.po Matrix/po/R-fr.po Matrix/po/de.po Matrix/po/fr.po Matrix/cleanup phase `unpack' succeeded after 0.1 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./cleanup: changing `/bin/sh' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/sh' patch-shebang: ./po/update-me.sh: changing `/bin/sh' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/sh' patch-shebang: ./src/scripts/0get-SuiteSparse.sh: changing `/bin/sh' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/sh' patch-shebang: ./src/scripts/DEPS.mkf_make.sh: changing `/bin/sh' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/sh' phase `patch-source-shebangs' succeeded after 0.1 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory * installing *source* package ‘Matrix’ ... files ‘cleanup’, ‘po/update-me.sh’, ‘src/scripts/0get-SuiteSparse.sh’, ‘src/scripts/DEPS.mkf_make.sh’ have the wrong MD5 checksums ** using staged installation ** libs gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c CHMfactor.c -o CHMfactor.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c Csparse.c -o Csparse.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c TMatrix_as.c -o TMatrix_as.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c Tsparse.c -o Tsparse.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c Mutils.c -o Mutils.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c chm_common.c -o chm_common.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c cs.c -o cs.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c cs_utils.c -o cs_utils.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dense.c -o dense.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dgCMatrix.c -o dgCMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dgTMatrix.c -o dgTMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dgeMatrix.c -o dgeMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dpoMatrix.c -o dpoMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dppMatrix.c -o dppMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dsCMatrix.c -o dsCMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dsyMatrix.c -o dsyMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dspMatrix.c -o dspMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dtCMatrix.c -o dtCMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dtTMatrix.c -o dtTMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dtrMatrix.c -o dtrMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dtpMatrix.c -o dtpMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c factorizations.c -o factorizations.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c ldense.c -o ldense.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c lgCMatrix.c -o lgCMatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c sparseQR.c -o sparseQR.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c abIndex.c -o abIndex.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c packedMatrix.c -o packedMatrix.o make[1]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[2]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/CHOLMOD/Lib' make[2]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/CHOLMOD/Lib' make[1]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/CHOLMOD' make[1]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/COLAMD' ( cd Source ; make clean ) make[2]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/COLAMD/Source' make[2]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/COLAMD/Source' make[1]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/COLAMD' make[1]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/AMD' ( cd Source ; make clean ) make[2]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/AMD/Source' make[2]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/AMD/Source' make[1]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/AMD' make[1]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/SuiteSparse_config' make[1]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/SuiteSparse_config' make[1]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/CHOLMOD' ( cd Lib ; make -f "/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/etc/Makeconf" -f Makefile ) make[2]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/CHOLMOD/Lib' gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_add.c -o cholmod_add.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_band.c -o cholmod_band.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_common.c -o cholmod_common.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_error.c -o cholmod_error.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_version.c -o cholmod_version.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_check.c -o cholmod_check.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_read.c -o cholmod_read.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_write.c -o cholmod_write.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/CHOLMOD/Lib' make[1]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/CHOLMOD' make[1]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/COLAMD' ( cd Source ; make -f "/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/etc/Makeconf" -f Makefile lib ) make[2]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/COLAMD/Source' gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c colamd.c -o colamd.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd.o colamd_l.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/COLAMD/Source' make[1]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/COLAMD' make[1]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/AMD' ( cd Source ; make -f "/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/etc/Makeconf" -f Makefile lib ) make[2]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/AMD/Source' gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/AMD/Source' make[1]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/AMD' make[1]: Entering directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/SuiteSparse_config' gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG -DNTIMER -I/usr/local/include -fpic -g -O2 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o ar: `u' modifier ignored since `D' is the default (see `U') make[1]: Leaving directory '/tmp/guix-build-r-matrix-1.4-1.drv-0/Matrix/src/SuiteSparse_config' gcc -shared -L/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/lib -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o packedMatrix.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/lib -lRlapack -L/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/lib -lRblas -L/gnu/store/qcli7b46b2v31kg7arbinqphx1srzqhd-gfortran-10.3.0-lib/lib/gcc/i686-unknown-linux-gnu/10.3.0 -L/gnu/store/qcli7b46b2v31kg7arbinqphx1srzqhd-gfortran-10.3.0-lib/lib -lgfortran -lm -lquadmath -L/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/lib -lR installing to /gnu/store/4n3lm4anb2k4xwhdmzr9ra3q1w5lcx4y-r-matrix-1.4-1/site-library/00LOCK-Matrix/00new/Matrix/libs ** R ** data ** inst ** tests ** byte-compile and prepare package for lazy loading Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘drop’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘Matrix’ Creating a generic function for ‘unname’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rcond’ from ‘base’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘rcond’ from package ‘base’ in package ‘Matrix’ in method for ‘coerce’ with signature ‘"matrix.csr","dgRMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"dgRMatrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csc","dgCMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"dgCMatrix","matrix.csc"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.coo","dgTMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"dgTMatrix","matrix.coo"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"dsparseMatrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csr","dgCMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","dgCMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csr","RsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csc","CsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.coo","TsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csr","CsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","CsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","TsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","TsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.coo"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.csc"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","Matrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","Matrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","Matrix"’: no definition for class “matrix.csc” Creating a generic function for ‘colSums’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘Matrix’ in method for ‘colSums’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix” in method for ‘rowSums’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix” in method for ‘colMeans’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix” in method for ‘rowMeans’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix” Creating a generic function for ‘zapsmall’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘crossprod’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘tcrossprod’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘which’ from package ‘base’ in package ‘Matrix’ in method for ‘coerce’ with signature ‘"graphAM","sparseMatrix"’: no definition for class “graphAM” in method for ‘coerce’ with signature ‘"graph","CsparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","Matrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graphNEL","CsparseMatrix"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"graphNEL","TsparseMatrix"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"sparseMatrix","graph"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"sparseMatrix","graphNEL"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"TsparseMatrix","graphNEL"’: no definition for class “graphNEL” Creating a generic function for ‘qr.R’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.Q’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.qy’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.qty’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.coef’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.resid’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.fitted’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘toeplitz’ from package ‘stats’ in package ‘Matrix’ ** help *** installing help indices ** building package indices Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** installing vignettes ** testing if installed package can be loaded from temporary location Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** testing if installed package keeps a record of temporary installation path * DONE (Matrix) phase `install' succeeded after 171.7 seconds starting phase `check' Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Testing examples for package ‘Matrix’ Running specific tests for package ‘Matrix’ Running ‘abIndex-tsts.R’ Running ‘base-matrix-fun.R’ Running ‘bind.R’ comparing ‘bind.Rout’ to ‘bind.Rout.save’ ... files differ in number of lines: 1,6d0 < Warning message: < In normalizePath("~") : < path[1]="/homeless-shelter": No such file or directory < Warning message: < In normalizePath("~") : < path[1]="/homeless-shelter": No such file or directory Running ‘Class+Meth.R’ Running ‘dg_Matrix.R’ Running ‘dpo-test.R’ Running ‘dtpMatrix.R’ Running ‘factorizing.R’ Running ‘group-methods.R’ Running ‘indexing.R’ comparing ‘indexing.Rout’ to ‘indexing.Rout.save’ ... files differ in number of lines: 1,6d0 < Warning message: < In normalizePath("~") : < path[1]="/homeless-shelter": No such file or directory < Warning message: < In normalizePath("~") : < path[1]="/homeless-shelter": No such file or directory 3421,3422d3414 < Warning message: < In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Running ‘matprod.R’ Running ‘matr-exp.R’ Running ‘other-pkgs.R’ Running ‘Simple.R’ Running ‘spModel.matrix.R’ Running ‘validObj.R’ Running ‘write-read.R’ Running vignettes for package ‘Matrix’ Running ‘Comparisons.Rnw’ Running ‘Design-issues.Rnw’ Running ‘Intro2Matrix.Rnw’ Running ‘Introduction.Rnw’ Running ‘sparseModels.Rnw’ *** Source Errors *** File sparseModels.R: there is no package called ‘MASS’ *** Weave Errors *** File sparseModels.Rnw: chunk 11 (label = npk_ex) Error in find.package(package, lib.loc, verbose = verbose) : there is no package called ‘MASS’ phase `check' succeeded after 143.1 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `make-dynamic-linker-cache' phase `make-dynamic-linker-cache' succeeded after 0.0 seconds starting phase `install-license-files' installing 1 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds