WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete'
starting phase `separate-from-pid1'
build process now running as PID 18
phase `separate-from-pid1' succeeded after 0.0 seconds
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/ygmbc2yxjxdylsz4qxxcwgckd8p5ngjp-python-wrapper-3.10.7/bin:/gnu/store/200kyp8vsn3nrpsdavcqrx9ry6dzcpk7-python-cffi-1.17.1/bin:/gnu/store/187hp2yywq7s5f9m79my34invnr59x19-python-wheel-0.40.0/bin:/gnu/store/xf9q2qibn5vb6cy6jb3ifkrh4wql7vxy-tar-1.34/bin:/gnu/store/5g3pia8fi48qvaqhb0xqw1j5yrxfkpbm-gzip-1.13/bin:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/bin:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/bin:/gnu/store/l1vf4qc0b70pzxqgz72sm4rj7b5fa1w0-diffutils-3.10/bin:/gnu/store/ihhhssc16ii48rds45i7v356l7p721ri-patch-2.7.6/bin:/gnu/store/w7isjvmf0qcs290vjwb7p3rjyfx0dn4s-findutils-4.9.0/bin:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/bin:/gnu/store/y8khv5c0z35xd5wh3lga1npkrg4n53wm-zstd-1.5.2/bin:/gnu/store/8mapjfzb13assv6nd4kph3csvqydk6ym-sed-4.8/bin:/gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/bin:/gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/bin:/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin:/gnu/store/cfzwm4yq78c39iqxlr146jr2lk1rl09c-ld-wrapper-0/bin:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/bin:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/sbin:/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/bin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/200kyp8vsn3nrpsdavcqrx9ry6dzcpk7-python-cffi-1.17.1/lib/python3.10/site-packages:/gnu/store/8vsvx8x63ikkiwyar848kd68cqrckh38-python-setuptools-67.6.1/lib/python3.10/site-packages:/gnu/store/187hp2yywq7s5f9m79my34invnr59x19-python-wheel-0.40.0/lib/python3.10/site-packages:/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/lib/python3.10/site-packages:/gnu/store/3nbhgmh4cdgxjjrrgni85bmn537f96an-python-pycparser-2.21/lib/python3.10/site-packages'
environment variable `PYTHONTZPATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/jxs9x17dbjlj31j736vm0xm2jclsjvxw-zlib-1.3/include:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/jxs9x17dbjlj31j736vm0xm2jclsjvxw-zlib-1.3/include:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include'
environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/jxs9x17dbjlj31j736vm0xm2jclsjvxw-zlib-1.3/include:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include'
environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/jxs9x17dbjlj31j736vm0xm2jclsjvxw-zlib-1.3/include:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/jxs9x17dbjlj31j736vm0xm2jclsjvxw-zlib-1.3/lib:/gnu/store/200kyp8vsn3nrpsdavcqrx9ry6dzcpk7-python-cffi-1.17.1/lib:/gnu/store/8vsvx8x63ikkiwyar848kd68cqrckh38-python-setuptools-67.6.1/lib:/gnu/store/187hp2yywq7s5f9m79my34invnr59x19-python-wheel-0.40.0/lib:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/lib:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/lib:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/lib:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/lib:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/lib:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib:/gnu/store/s21dvcsxf4ynf9jsip352z568knxb5hp-glibc-2.39-static/lib:/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/lib:/gnu/store/3nbhgmh4cdgxjjrrgni85bmn537f96an-python-pycparser-2.21/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib/locale'
environment variable `TZDIR' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'C.UTF-8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
bwapy-0.1.4/
bwapy-0.1.4/LICENSE.md
bwapy-0.1.4/MANIFEST.in
bwapy-0.1.4/Makefile
bwapy-0.1.4/PKG-INFO
bwapy-0.1.4/README.md
bwapy-0.1.4/bwa/
bwapy-0.1.4/bwa/.git
bwapy-0.1.4/bwa/.gitignore
bwapy-0.1.4/bwa/.travis.yml
bwapy-0.1.4/bwa/COPYING
bwapy-0.1.4/bwa/ChangeLog
bwapy-0.1.4/bwa/Makefile
bwapy-0.1.4/bwa/NEWS.md
bwapy-0.1.4/bwa/QSufSort.c
bwapy-0.1.4/bwa/QSufSort.h
bwapy-0.1.4/bwa/README-alt.md
bwapy-0.1.4/bwa/README.md
bwapy-0.1.4/bwa/bamlite.c
bwapy-0.1.4/bwa/bamlite.h
bwapy-0.1.4/bwa/bntseq.c
bwapy-0.1.4/bwa/bntseq.h
bwapy-0.1.4/bwa/bwa.1
bwapy-0.1.4/bwa/bwa.c
bwapy-0.1.4/bwa/bwa.h
bwapy-0.1.4/bwa/bwakit/
bwapy-0.1.4/bwa/bwakit/README.md
bwapy-0.1.4/bwa/bwakit/bwa-postalt.js
bwapy-0.1.4/bwa/bwakit/run-HLA
bwapy-0.1.4/bwa/bwakit/run-bwamem
bwapy-0.1.4/bwa/bwakit/run-gen-ref
bwapy-0.1.4/bwa/bwakit/typeHLA-selctg.js
bwapy-0.1.4/bwa/bwakit/typeHLA.js
bwapy-0.1.4/bwa/bwakit/typeHLA.sh
bwapy-0.1.4/bwa/bwamem.c
bwapy-0.1.4/bwa/bwamem.h
bwapy-0.1.4/bwa/bwamem_extra.c
bwapy-0.1.4/bwa/bwamem_pair.c
bwapy-0.1.4/bwa/bwape.c
bwapy-0.1.4/bwa/bwase.c
bwapy-0.1.4/bwa/bwase.h
bwapy-0.1.4/bwa/bwaseqio.c
bwapy-0.1.4/bwa/bwashm.c
bwapy-0.1.4/bwa/bwt.c
bwapy-0.1.4/bwa/bwt.h
bwapy-0.1.4/bwa/bwt_gen.c
bwapy-0.1.4/bwa/bwt_lite.c
bwapy-0.1.4/bwa/bwt_lite.h
bwapy-0.1.4/bwa/bwtaln.c
bwapy-0.1.4/bwa/bwtaln.h
bwapy-0.1.4/bwa/bwtgap.c
bwapy-0.1.4/bwa/bwtgap.h
bwapy-0.1.4/bwa/bwtindex.c
bwapy-0.1.4/bwa/bwtsw2.h
bwapy-0.1.4/bwa/bwtsw2_aux.c
bwapy-0.1.4/bwa/bwtsw2_chain.c
bwapy-0.1.4/bwa/bwtsw2_core.c
bwapy-0.1.4/bwa/bwtsw2_main.c
bwapy-0.1.4/bwa/bwtsw2_pair.c
bwapy-0.1.4/bwa/example.c
bwapy-0.1.4/bwa/fastmap.c
bwapy-0.1.4/bwa/is.c
bwapy-0.1.4/bwa/kbtree.h
bwapy-0.1.4/bwa/khash.h
bwapy-0.1.4/bwa/kopen.c
bwapy-0.1.4/bwa/kseq.h
bwapy-0.1.4/bwa/ksort.h
bwapy-0.1.4/bwa/kstring.c
bwapy-0.1.4/bwa/kstring.h
bwapy-0.1.4/bwa/ksw.c
bwapy-0.1.4/bwa/ksw.h
bwapy-0.1.4/bwa/kthread.c
bwapy-0.1.4/bwa/kvec.h
bwapy-0.1.4/bwa/libbwa.a
bwapy-0.1.4/bwa/main.c
bwapy-0.1.4/bwa/malloc_wrap.c
bwapy-0.1.4/bwa/malloc_wrap.h
bwapy-0.1.4/bwa/maxk.c
bwapy-0.1.4/bwa/pemerge.c
bwapy-0.1.4/bwa/qualfa2fq.pl
bwapy-0.1.4/bwa/rle.c
bwapy-0.1.4/bwa/rle.h
bwapy-0.1.4/bwa/rope.c
bwapy-0.1.4/bwa/rope.h
bwapy-0.1.4/bwa/utils.c
bwapy-0.1.4/bwa/utils.h
bwapy-0.1.4/bwa/xa2multi.pl
bwapy-0.1.4/bwapy/
bwapy-0.1.4/bwapy/__init__.py
bwapy-0.1.4/bwapy/libbwa.py
bwapy-0.1.4/bwapy/libbwapy.c
bwapy-0.1.4/bwapy/memopts.c
bwapy-0.1.4/bwapy.egg-info/
bwapy-0.1.4/bwapy.egg-info/PKG-INFO
bwapy-0.1.4/bwapy.egg-info/SOURCES.txt
bwapy-0.1.4/bwapy.egg-info/dependency_links.txt
bwapy-0.1.4/bwapy.egg-info/entry_points.txt
bwapy-0.1.4/bwapy.egg-info/not-zip-safe
bwapy-0.1.4/bwapy.egg-info/requires.txt
bwapy-0.1.4/bwapy.egg-info/top_level.txt
bwapy-0.1.4/requirements.txt
bwapy-0.1.4/setup.cfg
bwapy-0.1.4/setup.py
phase `unpack' succeeded after 0.0 seconds
starting phase `relax-requirements'
phase `relax-requirements' succeeded after 0.0 seconds
starting phase `ensure-no-mtimes-pre-1980'
phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds
starting phase `enable-bytecode-determinism'
phase `enable-bytecode-determinism' succeeded after 0.0 seconds
starting phase `ensure-no-cythonized-files'
phase `ensure-no-cythonized-files' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./bwa/bwakit/run-HLA: changing `/bin/bash' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./bwa/bwakit/run-bwamem: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./bwa/bwakit/run-gen-ref: changing `/bin/bash' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./bwa/bwakit/typeHLA.sh: changing `/bin/bash' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./bwa/qualfa2fq.pl: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./bwa/xa2multi.pl: warning: no binary for interpreter `perl' found in $PATH
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
patch-shebang: ./bwa/bwakit/run-bwamem: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./bwa/qualfa2fq.pl: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./bwa/xa2multi.pl: warning: no binary for interpreter `perl' found in $PATH
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
running "python setup.py" with command "build" and parameters ()
running build
make: 'bwa/libbwa.a' is up to date.
creating build
creating build/lib.linux-aarch64-cpython-310
running build_py
creating build/lib.linux-aarch64-cpython-310/bwapy
copying bwapy/libbwa.py -> build/lib.linux-aarch64-cpython-310/bwapy
copying bwapy/__init__.py -> build/lib.linux-aarch64-cpython-310/bwapy
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
building 'bwalib' extension
creating build/temp.linux-aarch64-cpython-310
creating build/temp.linux-aarch64-cpython-310/bwapy
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Ibwa -I/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/include/python3.10 -c bwapy/libbwapy.c -o build/temp.linux-aarch64-cpython-310/bwapy/libbwapy.o -pedantic -Wall -std=c99 -march=native -ffast-math -DUSE_SSE2 -DNDEBUG
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Ibwa -I/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/include/python3.10 -c bwapy/memopts.c -o build/temp.linux-aarch64-cpython-310/bwapy/memopts.o -pedantic -Wall -std=c99 -march=native -ffast-math -DUSE_SSE2 -DNDEBUG
gcc -shared -Wl,-rpath=/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/lib -fno-semantic-interposition build/temp.linux-aarch64-cpython-310/bwapy/libbwapy.o build/temp.linux-aarch64-cpython-310/bwapy/memopts.o bwa/libbwa.a -L/gnu/store/h2p8ig1i6x631z9dhfxgaqa2nacar98f-python-3.10.7/lib -lz -o build/lib.linux-aarch64-cpython-310/bwalib.cpython-310-aarch64-linux-gnu.so
ld: bwa/libbwa.a(bwa.o): Relocations in generic ELF (EM: 62)
ld: bwa/libbwa.a(bwa.o): Relocations in generic ELF (EM: 62)
ld: bwa/libbwa.a(bwa.o): Relocations in generic ELF (EM: 62)
ld: bwa/libbwa.a(bwa.o): Relocations in generic ELF (EM: 62)
ld: bwa/libbwa.a(bwa.o): Relocations in generic ELF (EM: 62)
ld: bwa/libbwa.a(bwa.o): Relocations in generic ELF (EM: 62)
ld: bwa/libbwa.a(bwa.o): Relocations in generic ELF (EM: 62)
ld: bwa/libbwa.a(bwa.o): Relocations in generic ELF (EM: 62)
ld: bwa/libbwa.a: error adding symbols: file in wrong format
collect2: error: ld returned 1 exit status
error: command '/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/bin/gcc' failed with exit code 1
error: in phase 'build': uncaught exception:
%exception #<&invoke-error program: "python" arguments: ("-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build") exit-status: 1 term-signal: #f stop-signal: #f> 
phase `build' failed after 1.3 seconds
command "python" "-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build" failed with status 1
build process 18 exited with status 256