starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/f8s95qc6dfhl0r45m70hczw5zip0xjxq-python-wrapper-3.8.2/bin:/gnu/store/vmqy25c8qk4iyqiiwrzdbqrr7ksl4rsi-python-nose-1.3.7/bin:/gnu/store/a0iv6fc4vw7nskp6yiwrc43kjfn4zd1j-htseq-0.9.1/bin:/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/bin:/gnu/store/kd16r2qb0s7g9ixc6agn485nhbgakdzj-python-numpy-1.17.3/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/bin:/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/bin:/gnu/store/xk0a4yimxbv2h5sm61vm31whzw8hs6k5-bedtools-2.30.0/bin:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/bin:/gnu/store/k40w2mw0kmhp82p9gvgx5y5h7q84jz8y-python-xlrd-1.2.0/bin:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/bin:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/bin:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/bin:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/bin:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/bin:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/sbin:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/bin:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/bin'
environment variable `PYTHONPATH' set to `/gnu/store/x29aa5cxycfji0ywdrn70iv31aqf7avb-python-setuptools-git-1.2/lib/python3.8/site-packages:/gnu/store/mjpmjzvaj9gfsak7cnn8xp3z7dsgmbwj-python-mock-3.0.5/lib/python3.8/site-packages:/gnu/store/vmqy25c8qk4iyqiiwrzdbqrr7ksl4rsi-python-nose-1.3.7/lib/python3.8/site-packages:/gnu/store/3f1fglk0f6jym9r0zfaf7vqjn6gx6js5-python-pytz-2021.1/lib/python3.8/site-packages:/gnu/store/a0iv6fc4vw7nskp6yiwrc43kjfn4zd1j-htseq-0.9.1/lib/python3.8/site-packages:/gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages:/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/lib/python3.8/site-packages:/gnu/store/sy5sb3mmb8m01dgdgfbilqhyalrlvs27-python-scikit-learn-0.24.1/lib/python3.8/site-packages:/gnu/store/71qji35y3abx4kr2nmsn9pp20apc908g-python-matplotlib-3.1.2/lib/python3.8/site-packages:/gnu/store/amad2jigvx6rwcn467g4g7v3n5r1jcb6-python-pandas-1.0.5/lib/python3.8/site-packages:/gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/lib/python3.8/site-packages:/gnu/store/kd16r2qb0s7g9ixc6agn485nhbgakdzj-python-numpy-1.17.3/lib/python3.8/site-packages:/gnu/store/7mpqwc57fgh657hh0a9q1lp2qjvfpxzq-python-scipy-1.6.0/lib/python3.8/site-packages:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/site-packages:/gnu/store/hjmz8ymac939ribn7g3jkgms4dk2az3a-python-six-1.14.0/lib/python3.8/site-packages:/gnu/store/s5nfa0iffzdz5la9753i8jmdlziyl0rs-python-pyyaml-5.3.1/lib/python3.8/site-packages:/gnu/store/vdf7l9wx142ylrj109qwyg3xf4wk69i5-python-joblib-0.14.1/lib/python3.8/site-packages:/gnu/store/f1b1zvby6wv46k02jckg6ny1lmcljmj7-python-threadpoolctl-2.1.0/lib/python3.8/site-packages:/gnu/store/qqgx08zxcgmkh23icrwmnlfcky97d36f-python-cairocffi-1.2.0/lib/python3.8/site-packages:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/lib/python3.8/site-packages:/gnu/store/8k372lg0nbjn070zj4nlnaw2zwqi7sv2-python-pillow-8.1.1/lib/python3.8/site-packages:/gnu/store/747z33isnpcw3n4h2d5qz9dvzcrk49y5-python-dateutil-2.8.1/lib/python3.8/site-packages:/gnu/store/2g6gfgfxk4z5gn6hlqgvix4fmk39yavf-python-3.8.2-tk/lib/python3.8/site-packages:/gnu/store/frj6yg9316ihw5k7yxm3gndzfv0yy3br-python-pygobject-3.34.0/lib/python3.8/site-packages:/gnu/store/69lzz2dp87f896843jj05mw5z4hd9my2-python-pyparsing-2.4.6/lib/python3.8/site-packages:/gnu/store/hsmq1drh329jj6gapp1cdm49601wpiyg-python-kiwisolver-1.0.1/lib/python3.8/site-packages:/gnu/store/p96cj23yln0s45kj6zy4pvghdh1ppbrh-python-cycler-0.10.0/lib/python3.8/site-packages:/gnu/store/k40w2mw0kmhp82p9gvgx5y5h7q84jz8y-python-xlrd-1.2.0/lib/python3.8/site-packages:/gnu/store/k2rj6y8ywhb3nymq4rwpyzfd1r9r90rq-python-openpyxl-3.0.5/lib/python3.8/site-packages:/gnu/store/6z2ri6yzpagh5pc32m8gn95lzarxkims-python-jinja2-2.11.2/lib/python3.8/site-packages:/gnu/store/8s2c7wm2zj1v1z007qwkd6j23x2ddyw6-python-xcffib-0.6.0/lib/python3.8/site-packages:/gnu/store/19yshim76656h8zw81fn8bc5ypvfav89-python-olefile-0.46/lib/python3.8/site-packages:/gnu/store/sq5ryxl1wzrib5ni6qmhyaxs3va97ihh-python-jdcal-1.4/lib/python3.8/site-packages:/gnu/store/ynq62g962801s21gj5r7n8vljrqqc8ym-python-et-xmlfile-1.0.1/lib/python3.8/site-packages:/gnu/store/r6jy13vsfb1fjlrhr43xdnz56d614aw6-python-markupsafe-1.1.1/lib/python3.8/site-packages:/gnu/store/j3k8ah697pg289zg7j9ix4a53i94liw4-python-cffi-1.14.4/lib/python3.8/site-packages:/gnu/store/k08j1silv8zxfglz3mb5q7ngmya9cv39-python-pycparser-2.20/lib/python3.8/site-packages'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include:/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/include:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/include:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/include:/gnu/store/frj6yg9316ihw5k7yxm3gndzfv0yy3br-python-pygobject-3.34.0/include:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/include:/gnu/store/bw15z9kh9c65ycc2vbhl2izwfwfva7p1-libffi-3.3/include:/gnu/store/qzj0j8lv58fyr7dbsjj4fzjcqvgmkwzb-glib-2.62.6/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/xwl0p4m34bcan0v9vkjkyzwi6znsv4dm-pixman-0.38.4/include:/gnu/store/wc157mk1w9nqgwgpv0mwca018hflv0w8-libxrender-0.9.10/include:/gnu/store/8rajfq6hncpmm4448fcha8d7d25x3ziq-libxext-1.3.4/include:/gnu/store/zyx5mhkpfyssvwljhpv5qv1iz1g2aqq3-libx11-1.6.10/include:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/include:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/include:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/include:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/include:/gnu/store/a45p39mgqvfd8kjwibyr0q42k1mw7gmf-util-linux-2.35.1-lib/include:/gnu/store/k0aqiy7yx8n28dvm3f0a04ka5sd8y950-pcre-8.44/include:/gnu/store/wxl57nkbqgamfp73b7v62kk3f1hiv0cz-xorgproto-2019.2/include:/gnu/store/lv92cmzqjpb8mxygpqdvh0mkkkfi9vmz-libxcb-1.14/include:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/include:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/include:/gnu/store/6cdl970wcv4jhvpgbh8sdj54a5gwhmwj-libxdmcp-1.1.3/include:/gnu/store/h7sy4hr7arjknbyy1aq0xwv6fksnzw9n-libxau-1.0.9/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include:/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/include:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/include:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/include:/gnu/store/frj6yg9316ihw5k7yxm3gndzfv0yy3br-python-pygobject-3.34.0/include:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/include:/gnu/store/bw15z9kh9c65ycc2vbhl2izwfwfva7p1-libffi-3.3/include:/gnu/store/qzj0j8lv58fyr7dbsjj4fzjcqvgmkwzb-glib-2.62.6/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/xwl0p4m34bcan0v9vkjkyzwi6znsv4dm-pixman-0.38.4/include:/gnu/store/wc157mk1w9nqgwgpv0mwca018hflv0w8-libxrender-0.9.10/include:/gnu/store/8rajfq6hncpmm4448fcha8d7d25x3ziq-libxext-1.3.4/include:/gnu/store/zyx5mhkpfyssvwljhpv5qv1iz1g2aqq3-libx11-1.6.10/include:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/include:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/include:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/include:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/include:/gnu/store/a45p39mgqvfd8kjwibyr0q42k1mw7gmf-util-linux-2.35.1-lib/include:/gnu/store/k0aqiy7yx8n28dvm3f0a04ka5sd8y950-pcre-8.44/include:/gnu/store/wxl57nkbqgamfp73b7v62kk3f1hiv0cz-xorgproto-2019.2/include:/gnu/store/lv92cmzqjpb8mxygpqdvh0mkkkfi9vmz-libxcb-1.14/include:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/include:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/include:/gnu/store/6cdl970wcv4jhvpgbh8sdj54a5gwhmwj-libxdmcp-1.1.3/include:/gnu/store/h7sy4hr7arjknbyy1aq0xwv6fksnzw9n-libxau-1.0.9/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/x29aa5cxycfji0ywdrn70iv31aqf7avb-python-setuptools-git-1.2/lib:/gnu/store/mjpmjzvaj9gfsak7cnn8xp3z7dsgmbwj-python-mock-3.0.5/lib:/gnu/store/vmqy25c8qk4iyqiiwrzdbqrr7ksl4rsi-python-nose-1.3.7/lib:/gnu/store/3f1fglk0f6jym9r0zfaf7vqjn6gx6js5-python-pytz-2021.1/lib:/gnu/store/a0iv6fc4vw7nskp6yiwrc43kjfn4zd1j-htseq-0.9.1/lib:/gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib:/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/lib:/gnu/store/sy5sb3mmb8m01dgdgfbilqhyalrlvs27-python-scikit-learn-0.24.1/lib:/gnu/store/71qji35y3abx4kr2nmsn9pp20apc908g-python-matplotlib-3.1.2/lib:/gnu/store/amad2jigvx6rwcn467g4g7v3n5r1jcb6-python-pandas-1.0.5/lib:/gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/lib:/gnu/store/kd16r2qb0s7g9ixc6agn485nhbgakdzj-python-numpy-1.17.3/lib:/gnu/store/7mpqwc57fgh657hh0a9q1lp2qjvfpxzq-python-scipy-1.6.0/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib:/gnu/store/hjmz8ymac939ribn7g3jkgms4dk2az3a-python-six-1.14.0/lib:/gnu/store/s5nfa0iffzdz5la9753i8jmdlziyl0rs-python-pyyaml-5.3.1/lib:/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/lib:/gnu/store/vdf7l9wx142ylrj109qwyg3xf4wk69i5-python-joblib-0.14.1/lib:/gnu/store/f1b1zvby6wv46k02jckg6ny1lmcljmj7-python-threadpoolctl-2.1.0/lib:/gnu/store/qqgx08zxcgmkh23icrwmnlfcky97d36f-python-cairocffi-1.2.0/lib:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/lib:/gnu/store/8k372lg0nbjn070zj4nlnaw2zwqi7sv2-python-pillow-8.1.1/lib:/gnu/store/747z33isnpcw3n4h2d5qz9dvzcrk49y5-python-dateutil-2.8.1/lib:/gnu/store/2g6gfgfxk4z5gn6hlqgvix4fmk39yavf-python-3.8.2-tk/lib:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/lib:/gnu/store/frj6yg9316ihw5k7yxm3gndzfv0yy3br-python-pygobject-3.34.0/lib:/gnu/store/69lzz2dp87f896843jj05mw5z4hd9my2-python-pyparsing-2.4.6/lib:/gnu/store/hsmq1drh329jj6gapp1cdm49601wpiyg-python-kiwisolver-1.0.1/lib:/gnu/store/p96cj23yln0s45kj6zy4pvghdh1ppbrh-python-cycler-0.10.0/lib:/gnu/store/k40w2mw0kmhp82p9gvgx5y5h7q84jz8y-python-xlrd-1.2.0/lib:/gnu/store/k2rj6y8ywhb3nymq4rwpyzfd1r9r90rq-python-openpyxl-3.0.5/lib:/gnu/store/6z2ri6yzpagh5pc32m8gn95lzarxkims-python-jinja2-2.11.2/lib:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/lib:/gnu/store/8s2c7wm2zj1v1z007qwkd6j23x2ddyw6-python-xcffib-0.6.0/lib:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/lib:/gnu/store/19yshim76656h8zw81fn8bc5ypvfav89-python-olefile-0.46/lib:/gnu/store/bw15z9kh9c65ycc2vbhl2izwfwfva7p1-libffi-3.3/lib:/gnu/store/qzj0j8lv58fyr7dbsjj4fzjcqvgmkwzb-glib-2.62.6/lib:/gnu/store/sq5ryxl1wzrib5ni6qmhyaxs3va97ihh-python-jdcal-1.4/lib:/gnu/store/ynq62g962801s21gj5r7n8vljrqqc8ym-python-et-xmlfile-1.0.1/lib:/gnu/store/r6jy13vsfb1fjlrhr43xdnz56d614aw6-python-markupsafe-1.1.1/lib:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib:/gnu/store/j3k8ah697pg289zg7j9ix4a53i94liw4-python-cffi-1.14.4/lib:/gnu/store/xwl0p4m34bcan0v9vkjkyzwi6znsv4dm-pixman-0.38.4/lib:/gnu/store/wc157mk1w9nqgwgpv0mwca018hflv0w8-libxrender-0.9.10/lib:/gnu/store/8rajfq6hncpmm4448fcha8d7d25x3ziq-libxext-1.3.4/lib:/gnu/store/zyx5mhkpfyssvwljhpv5qv1iz1g2aqq3-libx11-1.6.10/lib:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/lib:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/lib:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/lib:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/lib:/gnu/store/a45p39mgqvfd8kjwibyr0q42k1mw7gmf-util-linux-2.35.1-lib/lib:/gnu/store/k0aqiy7yx8n28dvm3f0a04ka5sd8y950-pcre-8.44/lib:/gnu/store/k08j1silv8zxfglz3mb5q7ngmya9cv39-python-pycparser-2.20/lib:/gnu/store/lv92cmzqjpb8mxygpqdvh0mkkkfi9vmz-libxcb-1.14/lib:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/lib:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/lib:/gnu/store/lc8irxnwazq340ygkbqh0ask446jzy9k-util-macros-1.19.2/lib:/gnu/store/6cdl970wcv4jhvpgbh8sdj54a5gwhmwj-libxdmcp-1.1.3/lib:/gnu/store/h7sy4hr7arjknbyy1aq0xwv6fksnzw9n-libxau-1.0.9/lib:/gnu/store/klk98l8czl05lvanrr7xl7a9hksac4ak-libpthread-stubs-0.4/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale'
environment variable `GI_TYPELIB_PATH' set to `/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/lib/girepository-1.0'
environment variable `XDG_DATA_DIRS' set to `/gnu/store/x29aa5cxycfji0ywdrn70iv31aqf7avb-python-setuptools-git-1.2/share:/gnu/store/mjpmjzvaj9gfsak7cnn8xp3z7dsgmbwj-python-mock-3.0.5/share:/gnu/store/vmqy25c8qk4iyqiiwrzdbqrr7ksl4rsi-python-nose-1.3.7/share:/gnu/store/3f1fglk0f6jym9r0zfaf7vqjn6gx6js5-python-pytz-2021.1/share:/gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/share:/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/share:/gnu/store/sy5sb3mmb8m01dgdgfbilqhyalrlvs27-python-scikit-learn-0.24.1/share:/gnu/store/71qji35y3abx4kr2nmsn9pp20apc908g-python-matplotlib-3.1.2/share:/gnu/store/amad2jigvx6rwcn467g4g7v3n5r1jcb6-python-pandas-1.0.5/share:/gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/share:/gnu/store/kd16r2qb0s7g9ixc6agn485nhbgakdzj-python-numpy-1.17.3/share:/gnu/store/7mpqwc57fgh657hh0a9q1lp2qjvfpxzq-python-scipy-1.6.0/share:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/share:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/share:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/share:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/share:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/share:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/share:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/share:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/share:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/share:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/share:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/share:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/share:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/share:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/share:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/share:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/share:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/share:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/share:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/share:/gnu/store/hjmz8ymac939ribn7g3jkgms4dk2az3a-python-six-1.14.0/share:/gnu/store/s5nfa0iffzdz5la9753i8jmdlziyl0rs-python-pyyaml-5.3.1/share:/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/share:/gnu/store/xk0a4yimxbv2h5sm61vm31whzw8hs6k5-bedtools-2.30.0/share:/gnu/store/vdf7l9wx142ylrj109qwyg3xf4wk69i5-python-joblib-0.14.1/share:/gnu/store/f1b1zvby6wv46k02jckg6ny1lmcljmj7-python-threadpoolctl-2.1.0/share:/gnu/store/qqgx08zxcgmkh23icrwmnlfcky97d36f-python-cairocffi-1.2.0/share:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/share:/gnu/store/8k372lg0nbjn070zj4nlnaw2zwqi7sv2-python-pillow-8.1.1/share:/gnu/store/747z33isnpcw3n4h2d5qz9dvzcrk49y5-python-dateutil-2.8.1/share:/gnu/store/2g6gfgfxk4z5gn6hlqgvix4fmk39yavf-python-3.8.2-tk/share:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/share:/gnu/store/69lzz2dp87f896843jj05mw5z4hd9my2-python-pyparsing-2.4.6/share:/gnu/store/hsmq1drh329jj6gapp1cdm49601wpiyg-python-kiwisolver-1.0.1/share:/gnu/store/p96cj23yln0s45kj6zy4pvghdh1ppbrh-python-cycler-0.10.0/share:/gnu/store/k40w2mw0kmhp82p9gvgx5y5h7q84jz8y-python-xlrd-1.2.0/share:/gnu/store/k2rj6y8ywhb3nymq4rwpyzfd1r9r90rq-python-openpyxl-3.0.5/share:/gnu/store/6z2ri6yzpagh5pc32m8gn95lzarxkims-python-jinja2-2.11.2/share:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/share:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/share:/gnu/store/8s2c7wm2zj1v1z007qwkd6j23x2ddyw6-python-xcffib-0.6.0/share:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/share:/gnu/store/19yshim76656h8zw81fn8bc5ypvfav89-python-olefile-0.46/share:/gnu/store/bw15z9kh9c65ycc2vbhl2izwfwfva7p1-libffi-3.3/share:/gnu/store/qzj0j8lv58fyr7dbsjj4fzjcqvgmkwzb-glib-2.62.6/share:/gnu/store/sq5ryxl1wzrib5ni6qmhyaxs3va97ihh-python-jdcal-1.4/share:/gnu/store/r6jy13vsfb1fjlrhr43xdnz56d614aw6-python-markupsafe-1.1.1/share:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/share:/gnu/store/j3k8ah697pg289zg7j9ix4a53i94liw4-python-cffi-1.14.4/share:/gnu/store/xwl0p4m34bcan0v9vkjkyzwi6znsv4dm-pixman-0.38.4/share:/gnu/store/wc157mk1w9nqgwgpv0mwca018hflv0w8-libxrender-0.9.10/share:/gnu/store/8rajfq6hncpmm4448fcha8d7d25x3ziq-libxext-1.3.4/share:/gnu/store/zyx5mhkpfyssvwljhpv5qv1iz1g2aqq3-libx11-1.6.10/share:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/share:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/share:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/share:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/share:/gnu/store/a45p39mgqvfd8kjwibyr0q42k1mw7gmf-util-linux-2.35.1-lib/share:/gnu/store/k0aqiy7yx8n28dvm3f0a04ka5sd8y950-pcre-8.44/share:/gnu/store/k08j1silv8zxfglz3mb5q7ngmya9cv39-python-pycparser-2.20/share:/gnu/store/wxl57nkbqgamfp73b7v62kk3f1hiv0cz-xorgproto-2019.2/share:/gnu/store/lv92cmzqjpb8mxygpqdvh0mkkkfi9vmz-libxcb-1.14/share:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/share:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/share:/gnu/store/lc8irxnwazq340ygkbqh0ask446jzy9k-util-macros-1.19.2/share:/gnu/store/6cdl970wcv4jhvpgbh8sdj54a5gwhmwj-libxdmcp-1.1.3/share:/gnu/store/h7sy4hr7arjknbyy1aq0xwv6fksnzw9n-libxau-1.0.9/share:/gnu/store/klk98l8czl05lvanrr7xl7a9hksac4ak-libpthread-stubs-0.4/share'
environment variable `GIO_EXTRA_MODULES' unset
phase `set-paths' succeeded after 0.2 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/setup.cfg' -> `./setup.cfg'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/.gitignore_global' -> `./.gitignore_global'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/README.md' -> `./README.md'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/environment.yml' -> `./environment.yml'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/environment3.yml' -> `./environment3.yml'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/setup.py' -> `./setup.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/gtf2bed.sh' -> `./clipper/gtf2bed.sh'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/__init__.py' -> `./clipper/__init__.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/nohup.out' -> `./clipper/nohup.out'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/test_main.py' -> `./clipper/test/test_main.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/test_filter_peak.py' -> `./clipper/test/test_filter_peak.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/test_utils.py' -> `./clipper/test/test_utils.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/__init__.py' -> `./clipper/test/__init__.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/test_peaks.py' -> `./clipper/test/test_peaks.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/test_spline.py' -> `./clipper/test/test_spline.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/test_call_peak.py' -> `./clipper/test/test_call_peak.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/test_peakfinder.py' -> `./clipper/test/test_peakfinder.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/test_bed_creation.bed' -> `./clipper/test/data/test_bed_creation.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/not_indexed_test.bam' -> `./clipper/test/data/not_indexed_test.bam'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/clip_analysis_test_peak_results.bed.exon.rand.0.BED' -> `./clipper/test/data/clip_analysis_test_peak_results.bed.exon.rand.0.BED'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/test.gtf' -> `./clipper/test/data/test.gtf'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/indexed_test.bam' -> `./clipper/test/data/indexed_test.bam'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/transcriptome_filter.sort.bam' -> `./clipper/test/data/transcriptome_filter.sort.bam'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/allup_test.bam.bai' -> `./clipper/test/data/allup_test.bam.bai'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/hg19_genes.bed' -> `./clipper/test/data/hg19_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/peak_results.BED' -> `./clipper/test/data/peak_results.BED'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/compseq_test.fasta.compseq' -> `./clipper/test/data/compseq_test.fasta.compseq'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/rmdup_test.bam' -> `./clipper/test/data/rmdup_test.bam'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/allup_test.rmdup.bam' -> `./clipper/test/data/allup_test.rmdup.bam'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/peak_results_no_overlap.BED' -> `./clipper/test/data/peak_results_no_overlap.BED'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/allup_test.bam' -> `./clipper/test/data/allup_test.bam'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/data_2.gtf' -> `./clipper/test/data/data_2.gtf'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/clip_analysis_test_peak_results.bed' -> `./clipper/test/data/clip_analysis_test_peak_results.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/motif_distance_test_motif.bed' -> `./clipper/test/data/motif_distance_test_motif.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/data.gtf' -> `./clipper/test/data/data.gtf'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/compseq_test.fasta' -> `./clipper/test/data/compseq_test.fasta'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/compseq_test_2.fasta' -> `./clipper/test/data/compseq_test_2.fasta'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/foo' -> `./clipper/test/data/foo'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/CLIP_Analysis_test.bed' -> `./clipper/test/data/CLIP_Analysis_test.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/ensembl_test.gtf' -> `./clipper/test/data/ensembl_test.gtf'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/transcriptome_cutoff.bam' -> `./clipper/test/data/transcriptome_cutoff.bam'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/allup_test.neg.bw' -> `./clipper/test/data/allup_test.neg.bw'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/compseq_test.out' -> `./clipper/test/data/compseq_test.out'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/clip_analysis_test_peak_results.bed.exon.real.BED' -> `./clipper/test/data/clip_analysis_test_peak_results.bed.exon.real.BED'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/indexed_test.bam.bai' -> `./clipper/test/data/indexed_test.bam.bai'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/allup_test.pos.bw' -> `./clipper/test/data/allup_test.pos.bw'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/compseq_test_2.fasta.compseq' -> `./clipper/test/data/compseq_test_2.fasta.compseq'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/motif_distance_test_cluster.bed' -> `./clipper/test/data/motif_distance_test_cluster.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/FOX2Brain-05.15.09.polyATrim.adapterTrim.rmRep.sorted.rmDup.peaks.bed' -> `./clipper/test/data/FOX2Brain-05.15.09.polyATrim.adapterTrim.rmRep.sorted.rmDup.peaks.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/test.tx.1.AS.STRUCTURE' -> `./clipper/test/data/test.tx.1.AS.STRUCTURE'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/transcriptome_filter.sort.bam.bai' -> `./clipper/test/data/transcriptome_filter.sort.bam.bai'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/test_peakfinder.py' -> `./clipper/test/data/test_peakfinder.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/test/clip_analysis_test_peak_results.bed.all.random.fa.compseq' -> `./clipper/test/data/test/clip_analysis_test_peak_results.bed.all.random.fa.compseq'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/test/clip_analysis_test_peak_results.bed.all.real.fa.compseq' -> `./clipper/test/data/test/clip_analysis_test_peak_results.bed.all.real.fa.compseq'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/test/clip_analysis_test_peak_results.bed.all.real.fa' -> `./clipper/test/data/test/clip_analysis_test_peak_results.bed.all.real.fa'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/test/data/test/clip_analysis_test_peak_results.bed.all.random.fa' -> `./clipper/test/data/test/clip_analysis_test_peak_results.bed.all.random.fa'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/main.py' -> `./clipper/src/main.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/peaksmodule.cc' -> `./clipper/src/peaksmodule.cc'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/filter_peak.py' -> `./clipper/src/filter_peak.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/utils.py' -> `./clipper/src/utils.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/__init__.py' -> `./clipper/src/__init__.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/readsToWiggle.pyx' -> `./clipper/src/readsToWiggle.pyx'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/call_peak.py' -> `./clipper/src/call_peak.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/peak_curve.py' -> `./clipper/src/peak_curve.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/src/peaks.so' -> `./clipper/src/peaks.so'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/GRCh38_v29.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/GRCh38_v29.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/hg19_VSV.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/hg19_VSV.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/GRCh38_pU6_cas9.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/GRCh38_pU6_cas9.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/test.AS.STRUCTURE_genes.BED.gz' -> `./clipper/data/test.AS.STRUCTURE_genes.BED.gz'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/hb27.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/hb27.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/test.AS.STRUCTURE_premRNA.lengths' -> `./clipper/data/test.AS.STRUCTURE_premRNA.lengths'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/hg19.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/hg19.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/hg19chr19.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/hg19chr19.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/ce10.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/ce10.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/__init__.py' -> `./clipper/data/__init__.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/ce10.AS.STRUCTURE.COMPILED.gff2' -> `./clipper/data/ce10.AS.STRUCTURE.COMPILED.gff2'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/mm9.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/mm9.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/GRCh38.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/GRCh38.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/mm10.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/mm10.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/dm3.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/dm3.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/GRCh38_v29e.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/GRCh38_v29e.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/test.AS.STRUCTURE_mRNA.lengths' -> `./clipper/data/test.AS.STRUCTURE_mRNA.lengths'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/mm10_vM15_VSV.AS.STRUCTURE.COMPILED.gff' -> `./clipper/data/mm10_vM15_VSV.AS.STRUCTURE.COMPILED.gff'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_poly_a_sites.bed' -> `./clipper/data/regions/mm9_poly_a_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_start_codons.bed' -> `./clipper/data/regions/GRCh38_start_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_start_codons.bed' -> `./clipper/data/regions/GRCh38_v24_start_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_cds.bed' -> `./clipper/data/regions/GRCh38_cds.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_proxintron500.bed' -> `./clipper/data/regions/GRCh38_proxintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_poly_a_sites.bed' -> `./clipper/data/regions/GRCh38_v24_poly_a_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_genes.bed' -> `./clipper/data/regions/mm9_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v29e_genes.bed' -> `./clipper/data/regions/GRCh38_v29e_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_stop_codons.bed' -> `./clipper/data/regions/mm9_stop_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_transcription_start_sites.bed' -> `./clipper/data/regions/hg19_transcription_start_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_stop_codons.bed' -> `./clipper/data/regions/hg19_v19_stop_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_five_prime_utrs.bed' -> `./clipper/data/regions/GRCh38_v24_five_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_transcription_start_sites.bed' -> `./clipper/data/regions/GRCh38_v24_transcription_start_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_distintron500.bed' -> `./clipper/data/regions/mm9_distintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_cds.bed' -> `./clipper/data/regions/GRCh38_v24_cds.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_five_prime_ends.bed' -> `./clipper/data/regions/ce10_five_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_three_prime_ends.bed' -> `./clipper/data/regions/hg19_three_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_genes.bed' -> `./clipper/data/regions/hg19_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_five_prime_ends.bed' -> `./clipper/data/regions/GRCh38_v24_five_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_genes.bed' -> `./clipper/data/regions/GRCh38_v24_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19chr19_v19_exons.bed' -> `./clipper/data/regions/hg19chr19_v19_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_start_codons.bed' -> `./clipper/data/regions/mm9_start_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_poly_a_sites.bed' -> `./clipper/data/regions/GRCh38_poly_a_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hb27_exons.bed' -> `./clipper/data/regions/hb27_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_distintron500.bed' -> `./clipper/data/regions/ce10_distintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_stop_codons.bed' -> `./clipper/data/regions/hg19_stop_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_five_prime_ends.bed' -> `./clipper/data/regions/hg19_v19_five_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_start_codons.bed' -> `./clipper/data/regions/ce10_start_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_exons.bed' -> `./clipper/data/regions/mm9_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_five_prime_ends.bed' -> `./clipper/data/regions/GRCh38_five_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v29e_exons.bed' -> `./clipper/data/regions/GRCh38_v29e_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_genes.bed' -> `./clipper/data/regions/GRCh38_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_transcription_start_sites.bed' -> `./clipper/data/regions/hg19_v19_transcription_start_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_exons.bed' -> `./clipper/data/regions/hg19_v19_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_introns.bed' -> `./clipper/data/regions/mm9_introns.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_transcription_start_sites.bed' -> `./clipper/data/regions/ce10_transcription_start_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19chr19_exons.bed' -> `./clipper/data/regions/hg19chr19_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_cds.bed' -> `./clipper/data/regions/hg19_cds.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_cds.bed' -> `./clipper/data/regions/hg19_v19_cds.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_introns.bed' -> `./clipper/data/regions/GRCh38_introns.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_introns.bed' -> `./clipper/data/regions/hg19_introns.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_three_prime_ends.bed' -> `./clipper/data/regions/mm9_three_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_three_prime_ends.bed' -> `./clipper/data/regions/ce10_three_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_three_prime_utrs.bed' -> `./clipper/data/regions/hg19_v19_three_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_three_prime_ends.bed' -> `./clipper/data/regions/hg19_v19_three_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_three_prime_ends.bed' -> `./clipper/data/regions/GRCh38_three_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_proxintron500.bed' -> `./clipper/data/regions/hg19_v19_proxintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_distintron500.bed' -> `./clipper/data/regions/hg19_v19_distintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_proxintron500.bed' -> `./clipper/data/regions/mm9_proxintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v29_exons.bed' -> `./clipper/data/regions/GRCh38_v29_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_pU6_cas9_exons.bed' -> `./clipper/data/regions/GRCh38_pU6_cas9_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_stop_codons.bed' -> `./clipper/data/regions/GRCh38_v24_stop_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_transcription_start_sites.bed' -> `./clipper/data/regions/mm9_transcription_start_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_exons.mrg.bed' -> `./clipper/data/regions/ce10_exons.mrg.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/__init__.py' -> `./clipper/data/regions/__init__.py'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm10_vM15_VSV_exons.bed' -> `./clipper/data/regions/mm10_vM15_VSV_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_genes.bed' -> `./clipper/data/regions/ce10_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_proxintron500.bed' -> `./clipper/data/regions/ce10_proxintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_five_prime_utrs.bed' -> `./clipper/data/regions/hg19_v19_five_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_exons.bed' -> `./clipper/data/regions/hg19_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_five_prime_ends.bed' -> `./clipper/data/regions/mm9_five_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_genes.bed' -> `./clipper/data/regions/hg19_v19_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_cds.bed' -> `./clipper/data/regions/ce10_cds.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_five_prime_utrs.bed' -> `./clipper/data/regions/hg19_five_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_poly_a_sites.bed' -> `./clipper/data/regions/hg19_poly_a_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_three_prime_utrs.bed' -> `./clipper/data/regions/GRCh38_three_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_transcription_start_sites.bed' -> `./clipper/data/regions/GRCh38_transcription_start_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_distintron500.bed' -> `./clipper/data/regions/GRCh38_v24_distintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_introns.bed' -> `./clipper/data/regions/ce10_introns.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_three_prime_utrs.bed' -> `./clipper/data/regions/mm9_three_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_poly_a_sites.bed' -> `./clipper/data/regions/hg19_v19_poly_a_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_five_prime_utrs.bed' -> `./clipper/data/regions/ce10_five_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_three_prime_ends.bed' -> `./clipper/data/regions/GRCh38_v24_three_prime_ends.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm10_exons.bed' -> `./clipper/data/regions/mm10_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_stop_codons.bed' -> `./clipper/data/regions/ce10_stop_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_proxintron500.bed' -> `./clipper/data/regions/GRCh38_v24_proxintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_poly_a_sites.bed' -> `./clipper/data/regions/ce10_poly_a_sites.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_five_prime_utrs.bed' -> `./clipper/data/regions/mm9_five_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v29_genes.bed' -> `./clipper/data/regions/GRCh38_v29_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_start_codons.bed' -> `./clipper/data/regions/hg19_start_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_stop_codons.bed' -> `./clipper/data/regions/GRCh38_stop_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_introns.bed' -> `./clipper/data/regions/GRCh38_v24_introns.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_exons.bed' -> `./clipper/data/regions/GRCh38_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_three_prime_utrs.bed' -> `./clipper/data/regions/GRCh38_v24_three_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_exons.bed' -> `./clipper/data/regions/ce10_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_proxintron500.bed' -> `./clipper/data/regions/hg19_proxintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_five_prime_utrs.bed' -> `./clipper/data/regions/GRCh38_five_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_distintron500.bed' -> `./clipper/data/regions/GRCh38_distintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_distintron500.bed' -> `./clipper/data/regions/hg19_distintron500.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_VSV_exons.bed' -> `./clipper/data/regions/hg19_VSV_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_start_codons.bed' -> `./clipper/data/regions/hg19_v19_start_codons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_v24_exons.bed' -> `./clipper/data/regions/GRCh38_v24_exons.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_v19_introns.bed' -> `./clipper/data/regions/hg19_v19_introns.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/ce10_three_prime_utrs.bed' -> `./clipper/data/regions/ce10_three_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_three_prime_utrs.bed' -> `./clipper/data/regions/hg19_three_prime_utrs.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/mm9_cds.bed' -> `./clipper/data/regions/mm9_cds.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/GRCh38_pU6_cas9_genes.bed' -> `./clipper/data/regions/GRCh38_pU6_cas9_genes.bed'
`/gnu/store/d3svzag4grhpqk42jcq0zmln17g3d4jw-clipper-2.0-checkout/clipper/data/regions/hg19_five_prime_ends.bed' -> `./clipper/data/regions/hg19_five_prime_ends.bed'
phase `unpack' succeeded after 2.1 seconds
starting phase `ensure-no-mtimes-pre-1980'
phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds
starting phase `enable-bytecode-determinism'
phase `enable-bytecode-determinism' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./clipper/gtf2bed.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
phase `patch-source-shebangs' succeeded after 0.4 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
running "python setup.py" with command "build" and parameters ()
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/clipper
copying clipper/__init__.py -> build/lib.linux-x86_64-3.8/clipper
creating build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/__init__.py -> build/lib.linux-x86_64-3.8/clipper/data
creating build/lib.linux-x86_64-3.8/clipper/src
copying clipper/src/main.py -> build/lib.linux-x86_64-3.8/clipper/src
copying clipper/src/filter_peak.py -> build/lib.linux-x86_64-3.8/clipper/src
copying clipper/src/utils.py -> build/lib.linux-x86_64-3.8/clipper/src
copying clipper/src/__init__.py -> build/lib.linux-x86_64-3.8/clipper/src
copying clipper/src/call_peak.py -> build/lib.linux-x86_64-3.8/clipper/src
copying clipper/src/peak_curve.py -> build/lib.linux-x86_64-3.8/clipper/src
creating build/lib.linux-x86_64-3.8/clipper/test
copying clipper/test/test_main.py -> build/lib.linux-x86_64-3.8/clipper/test
copying clipper/test/test_filter_peak.py -> build/lib.linux-x86_64-3.8/clipper/test
copying clipper/test/test_utils.py -> build/lib.linux-x86_64-3.8/clipper/test
copying clipper/test/__init__.py -> build/lib.linux-x86_64-3.8/clipper/test
copying clipper/test/test_peaks.py -> build/lib.linux-x86_64-3.8/clipper/test
copying clipper/test/test_spline.py -> build/lib.linux-x86_64-3.8/clipper/test
copying clipper/test/test_call_peak.py -> build/lib.linux-x86_64-3.8/clipper/test
copying clipper/test/test_peakfinder.py -> build/lib.linux-x86_64-3.8/clipper/test
creating build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/__init__.py -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/GRCh38_v29.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/hg19_VSV.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/GRCh38_pU6_cas9.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/test.AS.STRUCTURE_genes.BED.gz -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/hb27.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/test.AS.STRUCTURE_premRNA.lengths -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/hg19.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/hg19chr19.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/ce10.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/ce10.AS.STRUCTURE.COMPILED.gff2 -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/mm9.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/GRCh38.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/mm10.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/dm3.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/GRCh38_v29e.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/test.AS.STRUCTURE_mRNA.lengths -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/mm10_vM15_VSV.AS.STRUCTURE.COMPILED.gff -> build/lib.linux-x86_64-3.8/clipper/data
copying clipper/data/regions/mm9_poly_a_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_start_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_start_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_cds.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_proxintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_poly_a_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v29e_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_stop_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_transcription_start_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_stop_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_five_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_transcription_start_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_distintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_cds.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_five_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_three_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_five_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19chr19_v19_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_start_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_poly_a_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hb27_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_distintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_stop_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_five_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_start_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_five_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v29e_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_transcription_start_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_introns.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_transcription_start_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19chr19_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_cds.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_cds.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_introns.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_introns.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_three_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_three_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_three_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_three_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_three_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_proxintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_distintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_proxintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v29_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_pU6_cas9_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_stop_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_transcription_start_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_exons.mrg.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm10_vM15_VSV_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_proxintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_five_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_five_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_cds.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_five_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_poly_a_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_three_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_transcription_start_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_distintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_introns.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_three_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_poly_a_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_five_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_three_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm10_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_stop_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_proxintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_poly_a_sites.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_five_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v29_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_start_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_stop_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_introns.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_three_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_proxintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_five_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_distintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_distintron500.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_VSV_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_start_codons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_v24_exons.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_v19_introns.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/ce10_three_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_three_prime_utrs.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/mm9_cds.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/GRCh38_pU6_cas9_genes.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
copying clipper/data/regions/hg19_five_prime_ends.bed -> build/lib.linux-x86_64-3.8/clipper/data/regions
creating build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/test_bed_creation.bed -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/not_indexed_test.bam -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/clip_analysis_test_peak_results.bed.exon.rand.0.BED -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/test.gtf -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/indexed_test.bam -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/transcriptome_filter.sort.bam -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/allup_test.bam.bai -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/hg19_genes.bed -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/peak_results.BED -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/compseq_test.fasta.compseq -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/rmdup_test.bam -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/allup_test.rmdup.bam -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/peak_results_no_overlap.BED -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/allup_test.bam -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/data_2.gtf -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/clip_analysis_test_peak_results.bed -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/motif_distance_test_motif.bed -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/data.gtf -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/compseq_test.fasta -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/compseq_test_2.fasta -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/foo -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/CLIP_Analysis_test.bed -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/ensembl_test.gtf -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/transcriptome_cutoff.bam -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/allup_test.neg.bw -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/compseq_test.out -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/clip_analysis_test_peak_results.bed.exon.real.BED -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/indexed_test.bam.bai -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/allup_test.pos.bw -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/compseq_test_2.fasta.compseq -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/motif_distance_test_cluster.bed -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/FOX2Brain-05.15.09.polyATrim.adapterTrim.rmRep.sorted.rmDup.peaks.bed -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/test.tx.1.AS.STRUCTURE -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/transcriptome_filter.sort.bam.bai -> build/lib.linux-x86_64-3.8/clipper/test/data
copying clipper/test/data/test_peakfinder.py -> build/lib.linux-x86_64-3.8/clipper/test/data
running build_ext
cythoning clipper/src/readsToWiggle.pyx to clipper/src/readsToWiggle.c
building 'clipper.src.readsToWiggle' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/clipper
creating build/temp.linux-x86_64-3.8/clipper/src
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c clipper/src/readsToWiggle.c -o build/temp.linux-x86_64-3.8/clipper/src/readsToWiggle.o
gcc -pthread -shared -Wl,-rpath=/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib build/temp.linux-x86_64-3.8/clipper/src/readsToWiggle.o -L/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib -o build/lib.linux-x86_64-3.8/clipper/src/readsToWiggle.cpython-38-x86_64-linux-gnu.so
building 'clipper.src.peaks' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c clipper/src/peaksmodule.cc -o build/temp.linux-x86_64-3.8/clipper/src/peaksmodule.o
clipper/src/peaksmodule.cc: In function ‘PyObject* peaks_readsToWiggle_pysam(PyObject*, PyObject*)’:
clipper/src/peaksmodule.cc:332:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while (item = PyIter_Next(iterator)) {
          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
clipper/src/peaksmodule.cc: In function ‘PyObject* PyInit_peaks()’:
clipper/src/peaksmodule.cc:513:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
g++ -pthread -shared -Wl,-rpath=/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib build/temp.linux-x86_64-3.8/clipper/src/peaksmodule.o -L/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib -o build/lib.linux-x86_64-3.8/clipper/src/peaks.cpython-38-x86_64-linux-gnu.so
/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/lib/python3.8/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/guix-build-clipper-2.0.drv-0/source/clipper/src/readsToWiggle.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
phase `build' succeeded after 11.3 seconds
starting phase `install'
running "python setup.py" with command "install" and parameters ("--prefix=/gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0" "--single-version-externally-managed" "--root=/")
running install
running build
running build_py
running build_ext
skipping 'clipper/src/readsToWiggle.c' Cython extension (up-to-date)
running install_lib
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/GRCh38_v29.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/hg19_VSV.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/GRCh38_pU6_cas9.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/test.AS.STRUCTURE_genes.BED.gz -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/hb27.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/test.AS.STRUCTURE_premRNA.lengths -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/hg19.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/hg19chr19.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/ce10.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/__init__.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/ce10.AS.STRUCTURE.COMPILED.gff2 -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/mm9.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/GRCh38.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/mm10.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/dm3.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_poly_a_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_start_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_start_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_cds.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_proxintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_poly_a_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v29e_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_stop_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_transcription_start_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_stop_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_five_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_transcription_start_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_distintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_cds.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_five_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_three_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_five_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19chr19_v19_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_start_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_poly_a_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hb27_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_distintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_stop_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_five_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_start_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_five_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v29e_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_transcription_start_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_introns.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_transcription_start_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19chr19_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_cds.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_cds.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_introns.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_introns.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_three_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_three_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_three_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_three_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_three_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_proxintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_distintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_proxintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v29_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_pU6_cas9_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_stop_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_transcription_start_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_exons.mrg.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/__init__.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm10_vM15_VSV_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_proxintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_five_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_five_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_cds.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_five_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_poly_a_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_three_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_transcription_start_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_distintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_introns.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_three_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_poly_a_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_five_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_three_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm10_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_stop_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_proxintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_poly_a_sites.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_five_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v29_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_start_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_stop_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_introns.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_three_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_proxintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_five_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_distintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_distintron500.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_VSV_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_start_codons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_v24_exons.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_v19_introns.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/ce10_three_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_three_prime_utrs.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/mm9_cds.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/GRCh38_pU6_cas9_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/regions/hg19_five_prime_ends.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions
copying build/lib.linux-x86_64-3.8/clipper/data/GRCh38_v29e.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/test.AS.STRUCTURE_mRNA.lengths -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/data/mm10_vM15_VSV.AS.STRUCTURE.COMPILED.gff -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data
copying build/lib.linux-x86_64-3.8/clipper/__init__.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
copying build/lib.linux-x86_64-3.8/clipper/src/main.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
copying build/lib.linux-x86_64-3.8/clipper/src/filter_peak.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
copying build/lib.linux-x86_64-3.8/clipper/src/utils.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
copying build/lib.linux-x86_64-3.8/clipper/src/peaks.cpython-38-x86_64-linux-gnu.so -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
copying build/lib.linux-x86_64-3.8/clipper/src/__init__.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
copying build/lib.linux-x86_64-3.8/clipper/src/call_peak.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
copying build/lib.linux-x86_64-3.8/clipper/src/peak_curve.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
copying build/lib.linux-x86_64-3.8/clipper/src/readsToWiggle.cpython-38-x86_64-linux-gnu.so -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
copying build/lib.linux-x86_64-3.8/clipper/test/test_main.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
copying build/lib.linux-x86_64-3.8/clipper/test/test_filter_peak.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
creating /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/test_bed_creation.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/not_indexed_test.bam -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/clip_analysis_test_peak_results.bed.exon.rand.0.BED -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/test.gtf -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/indexed_test.bam -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/transcriptome_filter.sort.bam -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/allup_test.bam.bai -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/hg19_genes.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/peak_results.BED -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/compseq_test.fasta.compseq -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/rmdup_test.bam -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/allup_test.rmdup.bam -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/peak_results_no_overlap.BED -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/allup_test.bam -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/data_2.gtf -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/clip_analysis_test_peak_results.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/motif_distance_test_motif.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/data.gtf -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/compseq_test.fasta -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/compseq_test_2.fasta -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/foo -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/CLIP_Analysis_test.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/ensembl_test.gtf -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/transcriptome_cutoff.bam -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/allup_test.neg.bw -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/compseq_test.out -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/clip_analysis_test_peak_results.bed.exon.real.BED -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/indexed_test.bam.bai -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/allup_test.pos.bw -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/compseq_test_2.fasta.compseq -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/motif_distance_test_cluster.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/FOX2Brain-05.15.09.polyATrim.adapterTrim.rmRep.sorted.rmDup.peaks.bed -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/test.tx.1.AS.STRUCTURE -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/transcriptome_filter.sort.bam.bai -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/data/test_peakfinder.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data
copying build/lib.linux-x86_64-3.8/clipper/test/test_utils.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
copying build/lib.linux-x86_64-3.8/clipper/test/__init__.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
copying build/lib.linux-x86_64-3.8/clipper/test/test_peaks.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
copying build/lib.linux-x86_64-3.8/clipper/test/test_spline.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
copying build/lib.linux-x86_64-3.8/clipper/test/test_call_peak.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
copying build/lib.linux-x86_64-3.8/clipper/test/test_peakfinder.py -> /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/__init__.py to __init__.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/data/regions/__init__.py to __init__.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/__init__.py to __init__.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src/main.py to main.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src/filter_peak.py to filter_peak.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src/utils.py to utils.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src/__init__.py to __init__.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src/call_peak.py to call_peak.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/src/peak_curve.py to peak_curve.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/test_main.py to test_main.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/test_filter_peak.py to test_filter_peak.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data/test_peakfinder.py to test_peakfinder.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/test_utils.py to test_utils.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/__init__.py to __init__.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/test_peaks.py to test_peaks.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/test_spline.py to test_spline.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/test_call_peak.py to test_call_peak.cpython-38.pyc
byte-compiling /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/test_peakfinder.py to test_peakfinder.cpython-38.pyc
running install_egg_info
running egg_info
creating clipper.egg-info
writing clipper.egg-info/PKG-INFO
writing dependency_links to clipper.egg-info/dependency_links.txt
writing entry points to clipper.egg-info/entry_points.txt
writing requirements to clipper.egg-info/requires.txt
writing top-level names to clipper.egg-info/top_level.txt
writing manifest file 'clipper.egg-info/SOURCES.txt'
reading manifest file 'clipper.egg-info/SOURCES.txt'
writing manifest file 'clipper.egg-info/SOURCES.txt'
Copying clipper.egg-info to /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper-0.2.0-py3.8.egg-info
running install_scripts
Installing clipper script to /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/bin
  File "gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/lib/python3.8/site-packages/clipper/test/data/test_peakfinder.py", line 100
    print len(tested_tool)
          ^
SyntaxError: invalid syntax

phase `install' succeeded after 4.0 seconds
starting phase `wrap'
find-files: /gnu/store/hj21gayg4b5zy7x075zf87z1psczc3bz-clipper-2.0/sbin: No such file or directory
phase `wrap' succeeded after 0.5 seconds
starting phase `check'
running "python setup.py" with command "test" and parameters ()
running test
running egg_info
writing clipper.egg-info/PKG-INFO
writing dependency_links to clipper.egg-info/dependency_links.txt
writing entry points to clipper.egg-info/entry_points.txt
writing requirements to clipper.egg-info/requires.txt
writing top-level names to clipper.egg-info/top_level.txt
reading manifest file 'clipper.egg-info/SOURCES.txt'
writing manifest file 'clipper.egg-info/SOURCES.txt'
running build_ext
skipping 'clipper/src/readsToWiggle.c' Cython extension (up-to-date)
building 'clipper.src.readsToWiggle' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c clipper/src/readsToWiggle.c -o build/temp.linux-x86_64-3.8/clipper/src/readsToWiggle.o
gcc -pthread -shared -Wl,-rpath=/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib build/temp.linux-x86_64-3.8/clipper/src/readsToWiggle.o -L/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib -o /tmp/guix-build-clipper-2.0.drv-0/source/clipper/src/readsToWiggle.cpython-38-x86_64-linux-gnu.so
building 'clipper.src.peaks' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c clipper/src/peaksmodule.cc -o build/temp.linux-x86_64-3.8/clipper/src/peaksmodule.o
clipper/src/peaksmodule.cc: In function ‘PyObject* peaks_readsToWiggle_pysam(PyObject*, PyObject*)’:
clipper/src/peaksmodule.cc:332:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while (item = PyIter_Next(iterator)) {
          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
clipper/src/peaksmodule.cc: In function ‘PyObject* PyInit_peaks()’:
clipper/src/peaksmodule.cc:513:1: warning: no return statement in function returning non-void [-Wreturn-type]
 }
 ^
g++ -pthread -shared -Wl,-rpath=/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib build/temp.linux-x86_64-3.8/clipper/src/peaksmodule.o -L/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib -o /tmp/guix-build-clipper-2.0.drv-0/source/clipper/src/peaks.cpython-38-x86_64-linux-gnu.so
test_allup (clipper.test.test_main.Test)
Performs basic all up test on entire program (except for main) ... WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:942: ResourceWarning: subprocess 297 is still running
  _warn("subprocess %s is still running" % self.pid,

ok
test_allup_parallel (clipper.test.test_main.Test)
Performs basic all up test on entire program (except for main), running in parallel to ... 53
22
0
0
WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:740: ResourceWarning: unclosed file <_io.BufferedReader name=71>
  _cleanup()

WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:740: ResourceWarning: unclosed file <_io.BufferedReader name=75>
  _cleanup()

WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:942: ResourceWarning: subprocess 333 is still running
  _warn("subprocess %s is still running" % self.pid,

ok
test_check_overlaps (clipper.test.test_main.Test)
Checks for overlapping results, we don't want this ... 53
22
0
0
WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:740: ResourceWarning: unclosed file <_io.BufferedReader name=71>
  _cleanup()

WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:740: ResourceWarning: unclosed file <_io.BufferedReader name=74>
  _cleanup()

WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:942: ResourceWarning: subprocess 369 is still running
  _warn("subprocess %s is still running" % self.pid,

WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:740: ResourceWarning: unclosed file <_io.BufferedReader name=71>
  _cleanup()

WARNING:py.warnings:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/subprocess.py:740: ResourceWarning: unclosed file <_io.BufferedReader name=74>
  _cleanup()

ok
test_main (clipper.test.test_main.Test)
Performs unit testing on main ... ok
test_bonferroni_correct_filter_results (clipper.test.test_filter_peak.Test)
Tests to make sure bonferroni correction works ... ok
test_count_transcriptome_reads (clipper.test.test_filter_peak.Test)
Tests count_transcriptome_reads ... ok
test_filter_peaks_dicts (clipper.test.test_filter_peak.Test)
Tests filter results ... ok
test_poissonP (clipper.test.test_filter_peak.Test)
Performs unit testing on poissonP ... ERROR:root:Poisson cutoff failled float() argument must be a string or a number, not 'NoneType' 
ok
test_check_for_index (clipper.test.test_utils.Test)
Performs unit tests on check_for_index function ... ok
test_find_sections (clipper.test.test_peaks.Test) ... ok
test_find_sections_no_overlaps (clipper.test.test_peaks.Test) ... ok
test_find_sections_two_sections (clipper.test.test_peaks.Test) ... ok
test_large_sizes (clipper.test.test_peaks.Test) ... ok
test_readsToWiggle_paysam_none (clipper.test.test_peaks.Test)
Tests null input for reads to wiggle pysam ... ok
test_readsToWiggle_pysam (clipper.test.test_peaks.Test) ... ok
test_readsToWiggle_pysam_jxnsOnly (clipper.test.test_peaks.Test) ... ok
test_readsToWiggle_pysam_wiggles (clipper.test.test_peaks.Test)
Tests the ability of reads to wiggle to generate correct wiggle files ... ok
test_shuffle (clipper.test.test_peaks.Test) ... ok
test_small_sizes (clipper.test.test_peaks.Test) ... testing find sectionds
[(0, 2), (31, 63)]
[2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 11.0, 9.0, 9.0, 9.0, 9.0, 9.0, 9.0, 9.0, 9.0, 0, 0, 0]
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0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]ok
test_super_large_sizes (clipper.test.test_peaks.Test) ... ok
testName (clipper.test.test_spline.Test) ... ok
test_find_local_maxima (clipper.test.test_spline.Test)
Tests find local maxima function ... ok
test_find_local_minima (clipper.test.test_spline.Test)
tests find local minima range function ... ok
test_fit_loss (clipper.test.test_spline.Test)
Tests fit loss ... ok
test_fit_univariate_spline (clipper.test.test_spline.Test)
Tests fit univariate spline ... ok
test_get_maxima_real (clipper.test.test_spline.Test) ... ok
test_get_norm_penalized_residuals (clipper.test.test_spline.Test)
Tests get norm penalized residuals ... ok
test_get_start_stop_pairs_above_threshold (clipper.test.test_spline.Test)
tests generating start and stops function, ... ok
test_get_start_stop_pairs_above_threshold_regression (clipper.test.test_spline.Test)
regresstion test to make sure I didn't break anything ... ok
test_get_turn_penalized_residuals (clipper.test.test_spline.Test)
Tests get turn penalized residuals ... ok
test_init (clipper.test.test_spline.Test)
Tests init ... ok
test_optimize_fit (clipper.test.test_spline.Test)
Tests optimize fit ... ok
test_peaks (clipper.test.test_spline.Test)
Tests peaks ... ok
test_call_peaks (clipper.test.test_call_peak.Test) ... ok
test_get_FDR_cutoff_mean (clipper.test.test_call_peak.Test)
Performs unit tests on get_FDR_cutoff_mean function ... FAIL
test_peaks_from_info (clipper.test.test_call_peak.Test)
Tests peak_from_info function, really badly, I'm basically making this so I can ... ok

======================================================================
FAIL: test_get_FDR_cutoff_mean (clipper.test.test_call_peak.Test)
Performs unit tests on get_FDR_cutoff_mean function
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/tmp/guix-build-clipper-2.0.drv-0/source/clipper/test/test_call_peak.py", line 57, in test_get_FDR_cutoff_mean
    self.assertAlmostEqual(result, 11, 2) # sometimes output 1
AssertionError: 12 != 11 within 2 places (1 difference)

----------------------------------------------------------------------
Ran 36 tests in 55.001s

FAILED (failures=1)
Test failed: <unittest.runner.TextTestResult run=36 errors=0 failures=1>
error: Test failed: <unittest.runner.TextTestResult run=36 errors=0 failures=1>

[(31, 32, 31), (82, 85, 84), (85, 90, 87), (90, 98, 95), (98, 109, 105), (109, 117, 111), (118, 119, 118), (121, 122, 121), (124, 126, 125), (128, 130, 128), (130, 135, 131)]
command "python" "-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "test" failed with status 1