starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/bin:/gnu/store/99c25918hl9pihix8hparmc96q6zrpwy-tar-1.34/bin:/gnu/store/l0yga4lrwwf74rz7fb0dadglg27ajpsx-gzip-1.10/bin:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/bin:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/bin:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/bin:/gnu/store/h0rx6y95zin61fp5wlyjly4g9j2hma18-diffutils-3.8/bin:/gnu/store/7j8j7m0kgb7kv2fc18qvrdj7gs3jc4mx-patch-2.7.6/bin:/gnu/store/x4yglk9pn2s2ixl1b4lj151bd2yvlgww-findutils-4.8.0/bin:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/bin:/gnu/store/cnwr7widbi6470kfyb13krx46kz5anmy-sed-4.8/bin:/gnu/store/bx47clwnxn51m7jdwfimz4lw2fh8g21v-grep-3.6/bin:/gnu/store/9a0cjh929maqvkxn3inv6jqbxn72fkx0-coreutils-8.32/bin:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/bin:/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin:/gnu/store/4bzvr16pyax9224v9r72rqxswj9931sb-ld-wrapper-0/bin:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/bin:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/sbin' environment variable `R_LIBS_SITE' set to `/gnu/store/8q9dsp5fbcl0vwi4f231s7bz89p2h844-r-knitr-1.39/site-library/:/gnu/store/h5pk2pxlcsi6bb1r3vgnfnivzzx2b2zf-r-future-apply-1.9.0/site-library/:/gnu/store/d32z4jz8rg0byni5dv4brdfcbbf42lm0-r-numderiv-2016.8-1.1/site-library/:/gnu/store/4lfx7w8g143z84vgqph3ih4yzw2y9j3i-r-progressr-0.10.1/site-library/:/gnu/store/yk2knafwawfw4v80c1cfirhb9ji063p3-r-squarem-2021.1/site-library/:/gnu/store/f2dxjsgjlfdlzm8z2nxcnawcpqg4x3mn-r-survival-3.3-1/site-library/:/gnu/store/gncaf9nlzjp7z6j7rjnhmpi3id7f3d2z-r-yaml-2.3.5/site-library/:/gnu/store/yhb7aqvv6q7niskk8abkfm6c49l2jwzd-r-xfun-0.31/site-library/:/gnu/store/iyp7hrr5188mrdhahs3irq3i74zlyndn-r-stringr-1.4.0/site-library/:/gnu/store/ig10kl87xzcjhzw3kv2w4ychf42yp19c-r-highr-0.9/site-library/:/gnu/store/ds1cffn0c2xgihll60bqr1kgnnd61ixy-r-evaluate-0.15/site-library/:/gnu/store/vddh6ppfh7bwzhh2zxwa9zagmgl2xd6w-r-globals-0.15.1/site-library/:/gnu/store/ak3hjrx9xphjwk2af9a6pp8ikg7nyg98-r-future-1.26.1/site-library/:/gnu/store/lhc5z2vkra8kbz3n6jswq5l4bj04gqiv-r-digest-0.6.29/site-library/:/gnu/store/4n3lm4anb2k4xwhdmzr9ra3q1w5lcx4y-r-matrix-1.4-1/site-library/:/gnu/store/kdy7lp6f2v7jzg1w6mp9rcn1n8azfg7g-r-stringi-1.7.6/site-library/:/gnu/store/wg7w9ix2cjgsx2c5skx8pij7mjifi4w8-r-magrittr-2.0.3/site-library/:/gnu/store/1n4f86cwnddvq0dmcqp9y6ak1mdk9wf1-r-glue-1.6.2/site-library/:/gnu/store/7bqyjs2fb7km80s21yw09cpd9wrikllz-r-codetools-0.2-18/site-library/:/gnu/store/qbc7aflr88kms1mxavv3ng9sxjf8bli5-r-parallelly-1.32.0/site-library/:/gnu/store/fcamfvxfxhmramgdc6g2drr6qxk6s0i3-r-listenv-0.8.0/site-library/:/gnu/store/h0n8f70hqc3xlyvnwadp1xw3gixcsbz6-r-lattice-0.20-45/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include/c++:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include' environment variable `LIBRARY_PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/lib:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/lib:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/lib:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/lib:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/lib:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/lib:/gnu/store/1s4k8h3h1ka9za4yzg0dfjnlhab5k14p-glibc-2.33-static/lib:/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' lava/ lava/NAMESPACE lava/demo/ lava/demo/inference.R lava/demo/simulation.R lava/demo/estimation.R lava/demo/lava.R lava/demo/model.R lava/demo/00Index lava/README.md lava/data/ lava/data/calcium.rda lava/data/serotonin.rda lava/data/twindata.rda lava/data/hubble.rda lava/data/nsem.rda lava/data/semdata.rda lava/data/hubble2.rda lava/data/bmidata.rda lava/data/nldata.rda lava/data/bmd.rda lava/data/serotonin2.rda lava/data/indoorenv.rda lava/data/brisa.rda lava/data/missingdata.rda lava/man/ lava/man/confpred.Rd lava/man/rotate2.Rd lava/man/estimate.lvm.Rd lava/man/bmd.Rd lava/man/covariance.Rd lava/man/op_concat.Rd lava/man/calcium.Rd lava/man/gof.Rd lava/man/sim.default.Rd lava/man/hubble2.Rd lava/man/summary.sim.Rd lava/man/bmidata.Rd lava/man/cancel.Rd lava/man/backdoor.Rd lava/man/lvm.Rd lava/man/PD.Rd lava/man/subset.lvm.Rd lava/man/semdata.Rd lava/man/lava-package.Rd lava/man/internal.Rd lava/man/mixture.Rd lava/man/estimate.default.Rd lava/man/constrain-set.Rd lava/man/regression-set.Rd lava/man/vars.Rd lava/man/eventTime.Rd lava/man/commutation.Rd lava/man/spaghetti.Rd lava/man/plot.lvm.Rd lava/man/missingdata.Rd lava/man/plot.sim.Rd lava/man/intervention.lvm.Rd lava/man/bootstrap.Rd lava/man/ksmooth2.Rd lava/man/vec.Rd lava/man/nldata.Rd lava/man/Graph.Rd lava/man/twostage.Rd lava/man/twostageCV.Rd lava/man/Missing.Rd lava/man/confint.lvmfit.Rd lava/man/binomial.rd.Rd lava/man/children.Rd lava/man/Model.Rd lava/man/trim.Rd lava/man/bootstrap.lvm.Rd lava/man/twostage.lvmfit.Rd lava/man/curly.Rd lava/man/getSAS.Rd lava/man/ordreg.Rd lava/man/brisa.Rd lava/man/csplit.Rd lava/man/op_match.Rd lava/man/toformula.Rd lava/man/closed.testing.Rd lava/man/nsem.Rd lava/man/labels-set.Rd lava/man/getMplus.Rd lava/man/modelsearch.Rd lava/man/predictlvm.Rd lava/man/Range.lvm.Rd lava/man/serotonin2.Rd lava/man/fplot.Rd lava/man/path.Rd lava/man/equivalence.Rd lava/man/figures/ lava/man/figures/gof1-1.png lava/man/figures/nlin1-1.png lava/man/figures/simres1-1.png lava/man/figures/mediation1-1.png lava/man/figures/lvm1-1.png lava/man/rmvar.Rd lava/man/plot.estimate.Rd lava/man/correlation.Rd lava/man/iid.Rd lava/man/sim.Rd lava/man/NA2x.Rd lava/man/intercept.Rd lava/man/confband.Rd lava/man/complik.Rd lava/man/serotonin.Rd lava/man/partialcor.Rd lava/man/Combine.Rd lava/man/Expand.Rd lava/man/addvar.Rd lava/man/measurement.error.Rd lava/man/diagtest.Rd lava/man/Col.Rd lava/man/multinomial.Rd lava/man/pcor.Rd lava/man/colorbar.Rd lava/man/stack.estimate.Rd lava/man/NR.Rd lava/man/makemissing.Rd lava/man/rbind.Surv.Rd lava/man/hubble.Rd lava/man/pdfconvert.Rd lava/man/mvnmix.Rd lava/man/baptize.Rd lava/man/cv.Rd lava/man/By.Rd lava/man/blockdiag.Rd lava/man/timedep.Rd lava/man/scheffe.Rd lava/man/predict.lvm.Rd lava/man/Grep.Rd lava/man/twindata.Rd lava/man/ordinal-set.Rd lava/man/wrapvec.Rd lava/man/zibreg.Rd lava/man/contr.Rd lava/man/lava.options.Rd lava/man/revdiag.Rd lava/man/dsep.lvm.Rd lava/man/wait.Rd lava/man/devcoords.Rd lava/man/wkm.Rd lava/man/plotConf.Rd lava/man/compare.Rd lava/man/click.Rd lava/man/tr.Rd lava/man/images.Rd lava/man/parpos.Rd lava/man/indoorenv.Rd lava/DESCRIPTION lava/build/ lava/build/vignette.rds lava/tests/ lava/tests/test-all.R lava/tests/testthat/ lava/tests/testthat/test-multigroup.R lava/tests/testthat/test-estimate_default.R lava/tests/testthat/test-model.R lava/tests/testthat/test-sim.R lava/tests/testthat/test-constrain.R lava/tests/testthat/test-plot.R lava/tests/testthat/test-graph.R lava/tests/testthat/test-inference.R lava/tests/testthat/test-misc.R lava/vignettes/ lava/vignettes/nonlinear.Rmd lava/vignettes/graphs.org lava/vignettes/gof.org lava/vignettes/simulation.org lava/vignettes/nonlinear_fitcv.rds lava/vignettes/nonlinear_selmod.rds lava/vignettes/correlation.org lava/vignettes/correlation.Rmd lava/vignettes/nonlinear.org lava/vignettes/nonlinear_em0.rds lava/vignettes/ref.bib lava/R/ lava/R/residuals.R lava/R/iid.R lava/R/revdiag.R lava/R/iv.R lava/R/regression.R lava/R/print.R lava/R/heavytail.R lava/R/scheffe.R lava/R/interactive.R lava/R/score.survreg.R lava/R/diagtest.R lava/R/matrices.R lava/R/lmers.R lava/R/Col.R lava/R/combine.R lava/R/wrapvec.R lava/R/napass0.R lava/R/zgetsas.R lava/R/baptize.R lava/R/vars.R lava/R/vcov.R lava/R/binomial.rrw.R lava/R/mvnmix.R lava/R/deriv.R lava/R/plot.sim.R lava/R/toformula.R lava/R/measurement.error.R lava/R/addattr.R lava/R/categorical.R lava/R/utils.R lava/R/gof.R lava/R/subset.R lava/R/parsedesign.R lava/R/finalize.R lava/R/confint.R lava/R/zgetmplus.R lava/R/optims.R lava/R/equivalence.R lava/R/effects.R lava/R/pars.R lava/R/endogenous.R lava/R/chisqsum.R lava/R/estimate.lvm.R lava/R/cancel.R lava/R/lvm.R lava/R/zcolorbar.R lava/R/tr.R lava/R/addvar.R lava/R/predict.R lava/R/confpred.R lava/R/estimate.list.R lava/R/predict.mixture.R lava/R/addhook.R lava/R/distribution.R lava/R/onload.R lava/R/eventTime.R lava/R/weights.R lava/R/img.R lava/R/cv.R lava/R/gkgamma.R lava/R/pcor.R lava/R/latent.R lava/R/parameter.R lava/R/rotation.R lava/R/wait.R lava/R/glmest.R lava/R/sim.lvm.R lava/R/mixture.R lava/R/multipletesting.R lava/R/spaghetti.R lava/R/children.R lava/R/subgraph.R lava/R/measurement.R lava/R/multinomial.R lava/R/manifest.R lava/R/backdoor.R lava/R/nonlinear.R lava/R/formula.R lava/R/multipleinput.R lava/R/estimate.multigroup.R lava/R/exogenous.R lava/R/confband.R lava/R/trim.R lava/R/logo.R lava/R/lava-package.R lava/R/contr.R lava/R/cluster.hook.R lava/R/modelPar.R lava/R/assoc.R lava/R/labels.R lava/R/NA2x.R lava/R/csplit.R lava/R/variances.R lava/R/logLik.R lava/R/kill.R lava/R/correlation.R lava/R/By.R lava/R/transform.R lava/R/twostage.R lava/R/normal.R lava/R/parlabels.R lava/R/index.sem.R lava/R/Objective.R lava/R/model.R lava/R/ordreg.R lava/R/score.R lava/R/modelsearch.R lava/R/fix.R lava/R/timedep.R lava/R/operators.R lava/R/modelVar.R lava/R/dsep.R lava/R/rbind.Surv.R lava/R/blockdiag.R lava/R/Grep.R lava/R/summary.R lava/R/plot.R lava/R/missingMLE.R lava/R/frobnorm.R lava/R/parpos.R lava/R/graph2lvm.R lava/R/path.R lava/R/Inverse.R lava/R/procformula.R lava/R/covariance.R lava/R/Expand.R lava/R/curly.R lava/R/intervention.R lava/R/multigroup.R lava/R/zib.R lava/R/constrain.R lava/R/graph.R lava/R/fixsome.R lava/R/functional.R lava/R/complik.R lava/R/information.R lava/R/randomslope.R lava/R/plotConf.R lava/R/estimate.formula.R lava/R/makemissing.R lava/R/partialcor.R lava/R/ksmooth.R lava/R/ordinal.R lava/R/coef.R lava/R/kappa.R lava/R/nodecolor.R lava/R/model.frame.R lava/R/moments.R lava/R/wkm.R lava/R/merge.R lava/R/vec.R lava/R/compare.R lava/R/stack.R lava/R/estimate.default.R lava/R/profile.R lava/R/lisrel.R lava/R/fplot.R lava/R/sim.default.R lava/R/startvalues.R lava/R/pdfconvert.R lava/R/bootstrap.R lava/R/plot.estimate.R lava/R/commutation.R lava/R/describecoef.R lava/R/Missing.R lava/R/devcoords.R lava/NEWS.md lava/MD5 lava/INDEX lava/inst/ lava/inst/doc/ lava/inst/doc/nonlinear.Rmd lava/inst/doc/correlation.html lava/inst/doc/nonlinear.R lava/inst/doc/correlation.R lava/inst/doc/correlation.Rmd lava/inst/doc/nonlinear.html lava/inst/CITATION phase `unpack' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory * installing *source* package ‘lava’ ... ** package ‘lava’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** tests ** byte-compile and prepare package for lazy loading Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** help *** installing help indices *** copying figures ** building package indices Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** installing vignettes ** testing if installed package can be loaded from temporary location Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** testing if installed package can be loaded from final location Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** testing if installed package keeps a record of temporary installation path * DONE (lava) phase `install' succeeded after 38.7 seconds starting phase `check' Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Testing examples for package ‘lava’ phase `check' succeeded after 15.2 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `make-dynamic-linker-cache' phase `make-dynamic-linker-cache' succeeded after 0.0 seconds starting phase `install-license-files' installing 0 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds