starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
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environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/include:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/include:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/include:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/include:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/include:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/include:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include/c++:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/include:/gnu/store/sg9ks2n9ikj4952zmf2g851g206zb0r9-linux-libre-headers-5.4.20/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/lib:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/lib:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/lib:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/lib:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/lib:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/lib:/gnu/store/q5xs9789fyb5rnnr1nvq3zjd8biif14y-glibc-2.31-static/lib:/gnu/store/aybfkaw4fasp8hk1hzk3npmi952g11a3-glibc-utf8-locales-2.31/lib'
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phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
bioassayR/DESCRIPTION
bioassayR/NAMESPACE
bioassayR/R/
bioassayR/R/AllClasses.R
bioassayR/R/AllGenerics.R
bioassayR/R/BioassayDB-accessors.R
bioassayR/R/bayesian-cross-reactivity.R
bioassayR/R/bioassay-accessors.R
bioassayR/R/bioassaySet-accessors.R
bioassayR/R/loadingData.R
bioassayR/R/queries.R
bioassayR/R/similarity.R
bioassayR/README.md
bioassayR/build/
bioassayR/build/vignette.rds
bioassayR/data/
bioassayR/data/samplebioassay.rda
bioassayR/inst/
bioassayR/inst/CITATION
bioassayR/inst/NEWS.Rd
bioassayR/inst/doc/
bioassayR/inst/doc/bioassayR.R
bioassayR/inst/doc/bioassayR.Rmd
bioassayR/inst/doc/bioassayR.html
bioassayR/inst/extdata/
bioassayR/inst/extdata/exampleAssay.xml
bioassayR/inst/extdata/exampleScores.csv
bioassayR/inst/extdata/sampleDatabase.sqlite
bioassayR/man/
bioassayR/man/BioAssayDB-class.Rd
bioassayR/man/activeAgainst.Rd
bioassayR/man/activeTargets.Rd
bioassayR/man/addBioassayIndex.Rd
bioassayR/man/addDataSource.Rd
bioassayR/man/allCids.Rd
bioassayR/man/allTargets.Rd
bioassayR/man/assaySetTargets.Rd
bioassayR/man/bioactivityFingerprint.Rd
bioassayR/man/bioassay-class.Rd
bioassayR/man/bioassaySet-class.Rd
bioassayR/man/connectBioassayDB.Rd
bioassayR/man/crossReactivityProbability.Rd
bioassayR/man/disconnectBioassayDB.Rd
bioassayR/man/dropBioassay.Rd
bioassayR/man/dropBioassayIndex.Rd
bioassayR/man/getAssay.Rd
bioassayR/man/getAssays.Rd
bioassayR/man/getBioassaySetByCids.Rd
bioassayR/man/inactiveTargets.Rd
bioassayR/man/loadBioassay.Rd
bioassayR/man/loadIdMapping.Rd
bioassayR/man/newBioassayDB.Rd
bioassayR/man/parsePubChemBioassay.Rd
bioassayR/man/perTargetMatrix.Rd
bioassayR/man/queryBioassayDB.Rd
bioassayR/man/samplebioassay.Rd
bioassayR/man/scaleBioassaySet.Rd
bioassayR/man/screenedAtLeast.Rd
bioassayR/man/selectiveAgainst.Rd
bioassayR/man/targetSelectivity.Rd
bioassayR/man/translateTargetId.Rd
bioassayR/man/trinarySimilarity.Rd
bioassayR/tests/
bioassayR/tests/testthat/
bioassayR/tests/testthat.R
bioassayR/tests/testthat/test_bioactivityFingerprint.R
bioassayR/tests/testthat/test_crossReactivityProbability.R
bioassayR/tests/testthat/test_perTargetMatrix.R
bioassayR/tests/testthat/test_scaleBioassaySet.R
bioassayR/tests/testthat/test_targetSelectivity.R
bioassayR/tests/testthat/test_trinarySimilarity.R
bioassayR/vignettes/
bioassayR/vignettes/Makefile
bioassayR/vignettes/Makefile_bootstrap
bioassayR/vignettes/bibtex.bib
bioassayR/vignettes/bioassayR.Rmd
bioassayR/vignettes/bioassayR_cache/
bioassayR/vignettes/bioassayR_cache/html/
bioassayR/vignettes/bioassayR_cache/html/__packages
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bioassayR/vignettes/figures/
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bioassayR/vignettes/getBM.RData
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bioassayR/vignettes/header.html
bioassayR/vignettes/html.template_bootstrap
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starting phase `install'
* installing *source* package ‘bioassayR’ ...
** using staged installation
** R
** data
** inst
** tests
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘organism’ in package ‘bioassayR’
Creating a new generic function for ‘organism<-’ in package ‘bioassayR’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bioassayR)
phase `install' succeeded after 14.9 seconds
starting phase `check'
Testing examples for package ‘bioassayR’
Running specific tests for package ‘bioassayR’
  Running ‘testthat.R’
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