starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/kqi92357ksc7fjmrpr0s663ywzr0dm8q-r-knitr-1.33/site-library/:/gnu/store/qh6zfmrmb7srqb1h9hgm64gbhp7cm4fg-r-biocgenerics-0.36.1/site-library/:/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/:/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/:/gnu/store/sgkc3h839wijzlviiw425fxbjyq934hn-r-matrix-1.3-2/site-library/:/gnu/store/1wj99kiwyhqj0r0lhl9g0ylckxa0ql76-r-matrixgenerics-1.2.1/site-library/:/gnu/store/gl2pj9r7qi2xxr6lvfibwml6j1xcwz6l-r-yaml-2.2.1/site-library/:/gnu/store/k281zzn108xxkrzwdih0v71hf1vj4d5a-r-xfun-0.22/site-library/:/gnu/store/z35808jrbgah5y4h8gys74c9ja8fgk9b-r-stringr-1.4.0/site-library/:/gnu/store/qg128fx6brs8a28dwry5hnznfmvf1rw2-r-markdown-1.1/site-library/:/gnu/store/r41mca76fiqwmxc37izjifzhy380l81p-r-highr-0.9/site-library/:/gnu/store/k1x81c0my01w1pjhfzx312dxza1jxxd9-r-evaluate-0.14/site-library/:/gnu/store/8gy419z0s3l4hbnkza4afpivp1434zmr-r-lattice-0.20-44/site-library/:/gnu/store/akd4jzjjwfmvr72vannj8aqdycgiw2zh-r-matrixstats-0.58.0/site-library/:/gnu/store/dgizz42xg36mrb4607sxlqzr075vqy50-r-stringi-1.5.3/site-library/:/gnu/store/29bairzdrm91sxmbrsm5px8b7djq1n5y-r-magrittr-2.0.1/site-library/:/gnu/store/sx59njjib4m9d2x8vw80vczsb59vgl6a-r-glue-1.4.2/site-library/:/gnu/store/6lgjwi8m3lagbd79vn1fkp0pwhrl180p-r-mime-0.10/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
DelayedArray/DESCRIPTION
DelayedArray/NAMESPACE
DelayedArray/NEWS
DelayedArray/NOTES
DelayedArray/R/
DelayedArray/R/Array-class.R
DelayedArray/R/ArrayGrid-class.R
DelayedArray/R/AutoBlock-global-settings.R
DelayedArray/R/AutoGrid.R
DelayedArray/R/DelayedArray-class.R
DelayedArray/R/DelayedArray-stats.R
DelayedArray/R/DelayedArray-subsetting.R
DelayedArray/R/DelayedArray-utils.R
DelayedArray/R/DelayedMatrix-stats.R
DelayedArray/R/DelayedMatrix-utils.R
DelayedArray/R/DelayedOp-class.R
DelayedArray/R/Nindex-utils.R
DelayedArray/R/RleArray-class.R
DelayedArray/R/RleArraySeed-class.R
DelayedArray/R/SparseArraySeed-class.R
DelayedArray/R/SparseArraySeed-utils.R
DelayedArray/R/aperm2.R
DelayedArray/R/array_selection.R
DelayedArray/R/bind-arrays.R
DelayedArray/R/blockApply.R
DelayedArray/R/chunkGrid.R
DelayedArray/R/compress_atomic_vector.R
DelayedArray/R/extract_array.R
DelayedArray/R/makeCappedVolumeBox.R
DelayedArray/R/mapToGrid.R
DelayedArray/R/read_block.R
DelayedArray/R/realize.R
DelayedArray/R/show-utils.R
DelayedArray/R/showtree.R
DelayedArray/R/simplify.R
DelayedArray/R/sparseMatrix-utils.R
DelayedArray/R/utils.R
DelayedArray/R/write_block.R
DelayedArray/R/zzz.R
DelayedArray/README.md
DelayedArray/TODO
DelayedArray/build/
DelayedArray/build/vignette.rds
DelayedArray/inst/
DelayedArray/inst/doc/
DelayedArray/inst/doc/01-Working_with_large_arrays.R
DelayedArray/inst/doc/01-Working_with_large_arrays.Rnw
DelayedArray/inst/doc/01-Working_with_large_arrays.pdf
DelayedArray/inst/doc/02-Implementing_a_backend.Rmd
DelayedArray/inst/doc/02-Implementing_a_backend.html
DelayedArray/inst/unitTests/
DelayedArray/inst/unitTests/test_DelayedArray-class.R
DelayedArray/inst/unitTests/test_DelayedArray-utils.R
DelayedArray/inst/unitTests/test_DelayedMatrix-stats.R
DelayedArray/inst/unitTests/test_DelayedMatrix-utils.R
DelayedArray/inst/unitTests/test_DelayedOp-class.R
DelayedArray/inst/unitTests/test_RleArray-class.R
DelayedArray/inst/unitTests/test_SparseArraySeed-class.R
DelayedArray/inst/unitTests/test_SparseArraySeed-utils.R
DelayedArray/inst/unitTests/test_aperm2.R
DelayedArray/inst/unitTests/test_bind-arrays.R
DelayedArray/inst/unitTests/test_cbind-methods.R
DelayedArray/inst/unitTests/test_makeCappedVolumeBox.R
DelayedArray/inst/unitTests/test_read_block.R
DelayedArray/inst/unitTests/test_sparseMatrix-utils.R
DelayedArray/man/
DelayedArray/man/Array-class.Rd
DelayedArray/man/ArrayGrid-class.Rd
DelayedArray/man/AutoBlock-global-settings.Rd
DelayedArray/man/AutoGrid.Rd
DelayedArray/man/DelayedArray-class.Rd
DelayedArray/man/DelayedArray-stats.Rd
DelayedArray/man/DelayedArray-utils.Rd
DelayedArray/man/DelayedMatrix-stats.Rd
DelayedArray/man/DelayedMatrix-utils.Rd
DelayedArray/man/DelayedOp-class.Rd
DelayedArray/man/RleArray-class.Rd
DelayedArray/man/RleArraySeed-class.Rd
DelayedArray/man/SparseArraySeed-class.Rd
DelayedArray/man/SparseArraySeed-utils.Rd
DelayedArray/man/array_selection.Rd
DelayedArray/man/bind-arrays.Rd
DelayedArray/man/blockApply.Rd
DelayedArray/man/chunkGrid.Rd
DelayedArray/man/extract_array.Rd
DelayedArray/man/makeCappedVolumeBox.Rd
DelayedArray/man/mapToGrid.Rd
DelayedArray/man/read_block.Rd
DelayedArray/man/realize.Rd
DelayedArray/man/showtree.Rd
DelayedArray/man/simplify.Rd
DelayedArray/man/sparseMatrix-utils.Rd
DelayedArray/man/write_block.Rd
DelayedArray/src/
DelayedArray/src/DelayedArray.h
DelayedArray/src/R_init_DelayedArray.c
DelayedArray/src/S4Vectors_stubs.c
DelayedArray/src/abind.c
DelayedArray/src/array_selection.c
DelayedArray/src/compress_atomic_vector.c
DelayedArray/src/sparseMatrix_utils.c
DelayedArray/tests/
DelayedArray/tests/run_unitTests.R
DelayedArray/vignettes/
DelayedArray/vignettes/01-Working_with_large_arrays.Rnw
DelayedArray/vignettes/02-Implementing_a_backend.Rmd
DelayedArray/vignettes/slides.sty
phase `unpack' succeeded after 0.3 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘DelayedArray’ ...
** using staged installation
** libs
gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG  -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c R_init_DelayedArray.c -o R_init_DelayedArray.o
gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG  -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG  -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c abind.c -o abind.o
gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG  -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c array_selection.c -o array_selection.o
gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG  -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c compress_atomic_vector.c -o compress_atomic_vector.o
gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG  -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c sparseMatrix_utils.c -o sparseMatrix_utils.o
gcc -shared -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o sparseMatrix_utils.o -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -lR
installing to /gnu/store/3waa589avdampx69ig0n7ddx3pm9hkr0-r-delayedarray-0.16.3/site-library/00LOCK-DelayedArray/00new/DelayedArray/libs
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘rowsum’ in package ‘DelayedArray’
Creating a new generic function for ‘aperm’ in package ‘DelayedArray’
Creating a generic function for ‘sweep’ from package ‘base’ in package ‘DelayedArray’
Creating a new generic function for ‘apply’ in package ‘DelayedArray’
Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DelayedArray)
phase `install' succeeded after 38.7 seconds
starting phase `check'
Testing examples for package ‘DelayedArray’
phase `check' succeeded after 6.8 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds