starting phase `separate-from-pid1'
build process now running as PID 10
phase `separate-from-pid1' succeeded after 0.0 seconds
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/rifdrl2924k51285x4k9sbhjz07pph9s-python-wrapper-3.10.7/bin:/gnu/store/m8h0hv6g549nh9n9xfjphjrzqg8g2r2w-tar-1.34/bin:/gnu/store/b3mdz7n6j9dzkyi0scdbldnzrwcc3nlg-gzip-1.13/bin:/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/bin:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/bin:/gnu/store/ra6mdl923hpjw0yyrrj3j1snhibs32z0-diffutils-3.10/bin:/gnu/store/p76jj9sv007cj4hmfskjjsscy9z0vrc6-patch-2.7.6/bin:/gnu/store/p1g6q2qnp1m0iza4d09mknyqx1xspws3-findutils-4.9.0/bin:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/bin:/gnu/store/542d6rh6ci06ngcgiprnambqfws09i4f-zstd-1.5.2/bin:/gnu/store/mqb37w640rg4hx9nx00274r2kz54kc3w-sed-4.8/bin:/gnu/store/wpykxc5blf6vcw7bmqa4k21sqs44p8as-grep-3.11/bin:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/bin:/gnu/store/yxcrwcdd7blcczlc50i6lgcnj2w7nlja-coreutils-9.1/bin:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/bin:/gnu/store/ak41ci13apcxh5ahd8lc9rv6l7bqnwym-bash-minimal-5.1.16/bin:/gnu/store/d7ayy457nq3a42myfgqs2mc2zbx7z406-ld-wrapper-0/bin:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/bin:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/bin:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/bin:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/sbin:/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/bin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/lib/python3.10/site-packages'
environment variable `PYTHONTZPATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/include:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/include:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/include:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/include:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/include:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/include:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/include:/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/include:/gnu/store/hpcf3359y90qb3c8c1x5syr0ivrj54bg-linux-libre-headers-5.15.49/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/include:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/include:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/include:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/include:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/include:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/include:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include/c++:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/include:/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/include:/gnu/store/hpcf3359y90qb3c8c1x5syr0ivrj54bg-linux-libre-headers-5.15.49/include'
environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/include:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/include:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/include:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/include:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/include:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/include:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/include:/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/include:/gnu/store/hpcf3359y90qb3c8c1x5syr0ivrj54bg-linux-libre-headers-5.15.49/include'
environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/include:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/include:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/include:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/include:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/include:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/include:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include/c++:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/include:/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/include:/gnu/store/hpcf3359y90qb3c8c1x5syr0ivrj54bg-linux-libre-headers-5.15.49/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/lib:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/lib:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/lib:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/lib:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/lib:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/lib:/gnu/store/3wg51p14zipq2rl2k59pw7i8hirbdnb5-glibc-2.39-static/lib:/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/lib/locale'
environment variable `TZDIR' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'C.UTF-8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop-runner.py' -> `./porechop-runner.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/ez_setup.py' -> `./ez_setup.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/MANIFEST.in' -> `./MANIFEST.in'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/README.md' -> `./README.md'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/Makefile' -> `./Makefile'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/setup.py' -> `./setup.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/misc/porechop_logo_scissors.png' -> `./misc/porechop_logo_scissors.png'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/misc/porechop_logo_guillotine.png' -> `./misc/porechop_logo_guillotine.png'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/misc/middle_adapters.png' -> `./misc/middle_adapters.png'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/misc/porechop_logo_knife.png' -> `./misc/porechop_logo_knife.png'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/misc/verbose_barcodes.png' -> `./misc/verbose_barcodes.png'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/misc/end_trimming.png' -> `./misc/end_trimming.png'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/porechop.py' -> `./porechop/porechop.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/nanopore_read.py' -> `./porechop/nanopore_read.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/__init__.py' -> `./porechop/__init__.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/version.py' -> `./porechop/version.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/cpp_function_wrappers.py' -> `./porechop/cpp_function_wrappers.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/misc.py' -> `./porechop/misc.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/adapters.py' -> `./porechop/adapters.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/alignment.h' -> `./porechop/include/alignment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/adapter_align.h' -> `./porechop/include/adapter_align.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io.h' -> `./porechop/include/seqan/bam_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/platform.h' -> `./porechop/include/seqan/platform.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast.h' -> `./porechop/include/seqan/blast.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_split.h' -> `./porechop/include/seqan/align_split.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/alignment_free.h' -> `./porechop/include/seqan/alignment_free.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe.h' -> `./porechop/include/seqan/pipe.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index.h' -> `./porechop/include/seqan/index.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/vcf_io.h' -> `./porechop/include/seqan/vcf_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seq_io.h' -> `./porechop/include/seqan/seq_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree.h' -> `./porechop/include/seqan/journaled_string_tree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic.h' -> `./porechop/include/seqan/basic.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid.h' -> `./porechop/include/seqan/reduced_aminoacid.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types.h' -> `./porechop/include/seqan/graph_types.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/math.h' -> `./porechop/include/seqan/math.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/roi_io.h' -> `./porechop/include/seqan/roi_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_extend.h' -> `./porechop/include/seqan/align_extend.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/random.h' -> `./porechop/include/seqan/random.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bed_io.h' -> `./porechop/include/seqan/bed_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store.h' -> `./porechop/include/seqan/store.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/gff_io.h' -> `./porechop/include/seqan/gff_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse.h' -> `./porechop/include/seqan/arg_parse.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/tabix_io.h' -> `./porechop/include/seqan/tabix_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/translation.h' -> `./porechop/include/seqan/translation.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_profile.h' -> `./porechop/include/seqan/align_profile.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set.h' -> `./porechop/include/seqan/journaled_set.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/simple_intervals_io.h' -> `./porechop/include/seqan/simple_intervals_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/ucsc_io.h' -> `./porechop/include/seqan/ucsc_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find.h' -> `./porechop/include/seqan/find.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence.h' -> `./porechop/include/seqan/sequence.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa.h' -> `./porechop/include/seqan/graph_msa.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel.h' -> `./porechop/include/seqan/parallel.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds.h' -> `./porechop/include/seqan/seeds.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map.h' -> `./porechop/include/seqan/map.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier.h' -> `./porechop/include/seqan/modifier.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file.h' -> `./porechop/include/seqan/file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms.h' -> `./porechop/include/seqan/graph_algorithms.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence_journaled.h' -> `./porechop/include/seqan/sequence_journaled.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/realign.h' -> `./porechop/include/seqan/realign.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus.h' -> `./porechop/include/seqan/consensus.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align.h' -> `./porechop/include/seqan/graph_align.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score.h' -> `./porechop/include/seqan/score.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align.h' -> `./porechop/include/seqan/align.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/system.h' -> `./porechop/include/seqan/system.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io.h' -> `./porechop/include/seqan/rna_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/statistics.h' -> `./porechop/include/seqan/statistics.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parse_lm.h' -> `./porechop/include/seqan/parse_lm.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream.h' -> `./porechop/include/seqan/stream.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/version.h' -> `./porechop/include/seqan/version.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/edit_environment.h' -> `./porechop/include/seqan/misc/edit_environment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/memset.h' -> `./porechop/include/seqan/misc/memset.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/bit_twiddling.h' -> `./porechop/include/seqan/misc/bit_twiddling.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/terminal.h' -> `./porechop/include/seqan/misc/terminal.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/priority_type_heap.h' -> `./porechop/include/seqan/misc/priority_type_heap.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/bit_twiddling_functors.h' -> `./porechop/include/seqan/misc/bit_twiddling_functors.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/priority_type_base.h' -> `./porechop/include/seqan/misc/priority_type_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/union_find.h' -> `./porechop/include/seqan/misc/union_find.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/dequeue.h' -> `./porechop/include/seqan/misc/dequeue.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/set.h' -> `./porechop/include/seqan/misc/set.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/interval_tree.h' -> `./porechop/include/seqan/misc/interval_tree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/accumulators.h' -> `./porechop/include/seqan/misc/accumulators.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/map.h' -> `./porechop/include/seqan/misc/map.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/name_store_cache.h' -> `./porechop/include/seqan/misc/name_store_cache.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/base.h' -> `./porechop/include/seqan/misc/base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/misc/svg.h' -> `./porechop/include/seqan/misc/svg.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/roi_io/roi_record.h' -> `./porechop/include/seqan/roi_io/roi_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/roi_io/roi_io_context.h' -> `./porechop/include/seqan/roi_io/roi_io_context.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/roi_io/read_roi.h' -> `./porechop/include/seqan/roi_io/read_roi.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/roi_io/write_roi.h' -> `./porechop/include/seqan/roi_io/write_roi.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/roi_io/roi_file.h' -> `./porechop/include/seqan/roi_io/roi_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parse_lm/parse_lastz_general.h' -> `./porechop/include/seqan/parse_lm/parse_lastz_general.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parse_lm/parse_stellar_gff.h' -> `./porechop/include/seqan/parse_lm/parse_stellar_gff.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parse_lm/local_match_store.h' -> `./porechop/include/seqan/parse_lm/local_match_store.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parse_lm/parse_blastn_tabular.h' -> `./porechop/include/seqan/parse_lm/parse_blastn_tabular.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_annotation.h' -> `./porechop/include/seqan/store/store_annotation.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_io_sam.h' -> `./porechop/include/seqan/store/store_io_sam.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_align.h' -> `./porechop/include/seqan/store/store_align.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_read.h' -> `./porechop/include/seqan/store/store_read.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_base.h' -> `./porechop/include/seqan/store/store_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_align_intervals.h' -> `./porechop/include/seqan/store/store_align_intervals.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_io.h' -> `./porechop/include/seqan/store/store_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_intervaltree.h' -> `./porechop/include/seqan/store/store_intervaltree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_io_ucsc.h' -> `./porechop/include/seqan/store/store_io_ucsc.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_io_gff.h' -> `./porechop/include/seqan/store/store_io_gff.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_all.h' -> `./porechop/include/seqan/store/store_all.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_library.h' -> `./porechop/include/seqan/store/store_library.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_contig.h' -> `./porechop/include/seqan/store/store_contig.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/store/store_matepair.h' -> `./porechop/include/seqan/store/store_matepair.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/segment_utils.h' -> `./porechop/include/seqan/sequence/segment_utils.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_set_owner.h' -> `./porechop/include/seqan/sequence/string_set_owner.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/iter_concat_virtual.h' -> `./porechop/include/seqan/sequence/iter_concat_virtual.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/sequence_concatenator.h' -> `./porechop/include/seqan/sequence/sequence_concatenator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_set_segment.h' -> `./porechop/include/seqan/sequence/string_set_segment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/container_view_zip.h' -> `./porechop/include/seqan/sequence/container_view_zip.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/segment_prefix.h' -> `./porechop/include/seqan/sequence/segment_prefix.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_set_view.h' -> `./porechop/include/seqan/sequence/string_set_view.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/segment_suffix.h' -> `./porechop/include/seqan/sequence/segment_suffix.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_set_dependent_tight.h' -> `./porechop/include/seqan/sequence/string_set_dependent_tight.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_alloc.h' -> `./porechop/include/seqan/sequence/string_alloc.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/adapt_array_pointer.h' -> `./porechop/include/seqan/sequence/adapt_array_pointer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/container_view.h' -> `./porechop/include/seqan/sequence/container_view.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/sequence_shortcuts.h' -> `./porechop/include/seqan/sequence/sequence_shortcuts.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_set_concat_direct.h' -> `./porechop/include/seqan/sequence/string_set_concat_direct.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/sequence_forwards.h' -> `./porechop/include/seqan/sequence/sequence_forwards.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_base.h' -> `./porechop/include/seqan/sequence/string_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/segment_base.h' -> `./porechop/include/seqan/sequence/segment_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_packed.h' -> `./porechop/include/seqan/sequence/string_packed.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_block.h' -> `./porechop/include/seqan/sequence/string_block.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_set_base.h' -> `./porechop/include/seqan/sequence/string_set_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_array.h' -> `./porechop/include/seqan/sequence/string_array.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/adapt_stl_container.h' -> `./porechop/include/seqan/sequence/adapt_stl_container.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/sequence_lexical.h' -> `./porechop/include/seqan/sequence/sequence_lexical.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_cstyle.h' -> `./porechop/include/seqan/sequence/string_cstyle.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/segment_infix.h' -> `./porechop/include/seqan/sequence/segment_infix.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/sequence_interface.h' -> `./porechop/include/seqan/sequence/sequence_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_set_dependent_generous.h' -> `./porechop/include/seqan/sequence/string_set_dependent_generous.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence/string_packed_old.h' -> `./porechop/include/seqan/sequence/string_packed_old.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_drawing.h' -> `./porechop/include/seqan/graph_types/graph_drawing.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_iterator_dfs.h' -> `./porechop/include/seqan/graph_types/graph_iterator_dfs.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_iterator_outedge.h' -> `./porechop/include/seqan/graph_types/graph_iterator_outedge.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_iterator_vertex.h' -> `./porechop/include/seqan/graph_types/graph_iterator_vertex.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_utility_parsing.h' -> `./porechop/include/seqan/graph_types/graph_utility_parsing.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_impl_undirected.h' -> `./porechop/include/seqan/graph_types/graph_impl_undirected.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_edgestump.h' -> `./porechop/include/seqan/graph_types/graph_edgestump.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_base.h' -> `./porechop/include/seqan/graph_types/graph_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_impl_trie.h' -> `./porechop/include/seqan/graph_types/graph_impl_trie.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/property_map_internal.h' -> `./porechop/include/seqan/graph_types/property_map_internal.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_iterator.h' -> `./porechop/include/seqan/graph_types/graph_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_idmanager.h' -> `./porechop/include/seqan/graph_types/graph_idmanager.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_impl_directed.h' -> `./porechop/include/seqan/graph_types/graph_impl_directed.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_iterator_adjacency.h' -> `./porechop/include/seqan/graph_types/graph_iterator_adjacency.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/property_map_internal_pointer.h' -> `./porechop/include/seqan/graph_types/property_map_internal_pointer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_impl_oracle.h' -> `./porechop/include/seqan/graph_types/graph_impl_oracle.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/property_map_generic.h' -> `./porechop/include/seqan/graph_types/property_map_generic.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_impl_automaton.h' -> `./porechop/include/seqan/graph_types/graph_impl_automaton.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_interface.h' -> `./porechop/include/seqan/graph_types/graph_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_iterator_edge.h' -> `./porechop/include/seqan/graph_types/graph_iterator_edge.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_impl_wordgraph.h' -> `./porechop/include/seqan/graph_types/graph_impl_wordgraph.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_iterator_bfs.h' -> `./porechop/include/seqan/graph_types/graph_iterator_bfs.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_impl_tree.h' -> `./porechop/include/seqan/graph_types/graph_impl_tree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_types/graph_impl_hmm.h' -> `./porechop/include/seqan/graph_types/graph_impl_hmm.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_scanner_cache.h' -> `./porechop/include/seqan/bam_io/bam_scanner_cache.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_sam_conversion.h' -> `./porechop/include/seqan/bam_io/bam_sam_conversion.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/read_bam.h' -> `./porechop/include/seqan/bam_io/read_bam.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_tags_dict.h' -> `./porechop/include/seqan/bam_io/bam_tags_dict.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/cigar.h' -> `./porechop/include/seqan/bam_io/cigar.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_alignment_record_util.h' -> `./porechop/include/seqan/bam_io/bam_alignment_record_util.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_file.h' -> `./porechop/include/seqan/bam_io/bam_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_index_bai.h' -> `./porechop/include/seqan/bam_io/bam_index_bai.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/write_sam.h' -> `./porechop/include/seqan/bam_io/write_sam.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_alignment_record.h' -> `./porechop/include/seqan/bam_io/bam_alignment_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_header_record.h' -> `./porechop/include/seqan/bam_io/bam_header_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/write_bam.h' -> `./porechop/include/seqan/bam_io/write_bam.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/read_sam.h' -> `./porechop/include/seqan/bam_io/read_sam.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bam_io/bam_io_context.h' -> `./porechop/include/seqan/bam_io/bam_io_context.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/math/math_rational.h' -> `./porechop/include/seqan/math/math_rational.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/math/math_operators.h' -> `./porechop/include/seqan/math/math_operators.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/math/math_common_factor.h' -> `./porechop/include/seqan/math/math_common_factor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_split/dp_scout_split.h' -> `./porechop/include/seqan/align_split/dp_scout_split.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_split/align_split_interface.h' -> `./porechop/include/seqan/align_split/align_split_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/tabix_io/tabix_index_tbi.h' -> `./porechop/include/seqan/tabix_io/tabix_index_tbi.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/gff_io/gff_io_base.h' -> `./porechop/include/seqan/gff_io/gff_io_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/gff_io/gff_file.h' -> `./porechop/include/seqan/gff_io/gff_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map/map_skiplist.h' -> `./porechop/include/seqan/map/map_skiplist.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map/sumlist_mini.h' -> `./porechop/include/seqan/map/sumlist_mini.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map/sumlist_skip.h' -> `./porechop/include/seqan/map/sumlist_skip.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map/map_base.h' -> `./porechop/include/seqan/map/map_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map/map_adapter_stl.h' -> `./porechop/include/seqan/map/map_adapter_stl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map/map_vector.h' -> `./porechop/include/seqan/map/map_vector.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map/sumlist.h' -> `./porechop/include/seqan/map/sumlist.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/map/map_chooser.h' -> `./porechop/include/seqan/map/map_chooser.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h' -> `./porechop/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/jst_extension_shiftor.h' -> `./porechop/include/seqan/journaled_string_tree/jst_extension_shiftor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/journaled_string_tree_base.h' -> `./porechop/include/seqan/journaled_string_tree/journaled_string_tree_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/journaled_string_tree_impl.h' -> `./porechop/include/seqan/journaled_string_tree/journaled_string_tree_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/delta_map_entry.h' -> `./porechop/include/seqan/journaled_string_tree/delta_map_entry.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/delta_map_iterator.h' -> `./porechop/include/seqan/journaled_string_tree/delta_map_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h' -> `./porechop/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h' -> `./porechop/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/observable.h' -> `./porechop/include/seqan/journaled_string_tree/observable.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/delta_map.h' -> `./porechop/include/seqan/journaled_string_tree/delta_map.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h' -> `./porechop/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/jst_extension_shiftand.h' -> `./porechop/include/seqan/journaled_string_tree/jst_extension_shiftand.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/jst_extension_myers_ukkonen.h' -> `./porechop/include/seqan/journaled_string_tree/jst_extension_myers_ukkonen.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/stack_observer.h' -> `./porechop/include/seqan/journaled_string_tree/stack_observer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/jst_extension_horspool.h' -> `./porechop/include/seqan/journaled_string_tree/jst_extension_horspool.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/jst_extension_base.h' -> `./porechop/include/seqan/journaled_string_tree/jst_extension_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_string_tree/delta_store.h' -> `./porechop/include/seqan/journaled_string_tree/delta_store.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/realign/realign_helper_functions.h' -> `./porechop/include/seqan/realign/realign_helper_functions.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/realign/realign_base.h' -> `./porechop/include/seqan/realign/realign_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/simple_intervals_io/simple_intervals_io.h' -> `./porechop/include/seqan/simple_intervals_io/simple_intervals_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/simple_intervals_io/simple_intervals_file.h' -> `./porechop/include/seqan/simple_intervals_io/simple_intervals_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/random/random_beta.h' -> `./porechop/include/seqan/random/random_beta.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/random/random_base.h' -> `./porechop/include/seqan/random/random_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/random/random_util.h' -> `./porechop/include/seqan/random/random_util.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bed_io/bed_record.h' -> `./porechop/include/seqan/bed_io/bed_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bed_io/write_bed.h' -> `./porechop/include/seqan/bed_io/write_bed.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bed_io/read_bed.h' -> `./porechop/include/seqan/bed_io/read_bed.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/bed_io/bed_file.h' -> `./porechop/include/seqan/bed_io/bed_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/consensus_score.h' -> `./porechop/include/seqan/consensus/consensus_score.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/consensus_base.h' -> `./porechop/include/seqan/consensus/consensus_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/overlapper.h' -> `./porechop/include/seqan/consensus/overlapper.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/consensus_library.h' -> `./porechop/include/seqan/consensus/consensus_library.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/consensus_aligner_interface.h' -> `./porechop/include/seqan/consensus/consensus_aligner_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/consensus_builder.h' -> `./porechop/include/seqan/consensus/consensus_builder.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/consensus_aligner.h' -> `./porechop/include/seqan/consensus/consensus_aligner.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/consensus_alignment_options.h' -> `./porechop/include/seqan/consensus/consensus_alignment_options.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/consensus_realign.h' -> `./porechop/include/seqan/consensus/consensus_realign.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/consensus/overlap_info_computation.h' -> `./porechop/include/seqan/consensus/overlap_info_computation.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/ucsc_io/ucsc_io.h' -> `./porechop/include/seqan/ucsc_io/ucsc_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/ucsc_io/ucsc_file.h' -> `./porechop/include/seqan/ucsc_io/ucsc_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/ucsc_io/ucsc_record.h' -> `./porechop/include/seqan/ucsc_io/ucsc_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_profile/add_to_profile.h' -> `./porechop/include/seqan/align_profile/add_to_profile.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_profile/score_profile_seq.h' -> `./porechop/include/seqan/align_profile/score_profile_seq.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_io_context.h' -> `./porechop/include/seqan/blast/blast_io_context.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_base.h' -> `./porechop/include/seqan/blast/blast_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_statistics.h' -> `./porechop/include/seqan/blast/blast_statistics.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_tabular_in.h' -> `./porechop/include/seqan/blast/blast_tabular_in.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_report_out.h' -> `./porechop/include/seqan/blast/blast_report_out.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_tabular.h' -> `./porechop/include/seqan/blast/blast_tabular.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_tabular_lowlevel.h' -> `./porechop/include/seqan/blast/blast_tabular_lowlevel.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_record.h' -> `./porechop/include/seqan/blast/blast_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/blast/blast_tabular_out.h' -> `./porechop/include/seqan/blast/blast_tabular_out.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_algorithm_refine_aligngraph.h' -> `./porechop/include/seqan/graph_align/graph_algorithm_refine_aligngraph.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_algorithm_refine_inexact.h' -> `./porechop/include/seqan/graph_align/graph_algorithm_refine_inexact.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_impl_align.h' -> `./porechop/include/seqan/graph_align/graph_impl_align.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h' -> `./porechop/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_algorithm_refine_align.h' -> `./porechop/include/seqan/graph_align/graph_algorithm_refine_align.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_algorithm_refine_fragment.h' -> `./porechop/include/seqan/graph_align/graph_algorithm_refine_fragment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_algorithm_refine_annotation.h' -> `./porechop/include/seqan/graph_align/graph_algorithm_refine_annotation.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_algorithm_refine_exact.h' -> `./porechop/include/seqan/graph_align/graph_algorithm_refine_exact.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_impl_align_adapt.h' -> `./porechop/include/seqan/graph_align/graph_impl_align_adapt.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_align/graph_algorithm_refine_scoring.h' -> `./porechop/include/seqan/graph_align/graph_algorithm_refine_scoring.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file/file_forwards.h' -> `./porechop/include/seqan/file/file_forwards.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file/file_base.h' -> `./porechop/include/seqan/file/file_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file/file_interface.h' -> `./porechop/include/seqan/file/file_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file/string_mmap.h' -> `./porechop/include/seqan/file/string_mmap.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file/string_external.h' -> `./porechop/include/seqan/file/string_external.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file/file_mapping.h' -> `./porechop/include/seqan/file/file_mapping.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file/file_page.h' -> `./porechop/include/seqan/file/file_page.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/file/file_cstyle.h' -> `./porechop/include/seqan/file/file_cstyle.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/statistics/statistics_markov_model.h' -> `./porechop/include/seqan/statistics/statistics_markov_model.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/statistics/statistics_base.h' -> `./porechop/include/seqan/statistics/statistics_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seq_io/read_embl.h' -> `./porechop/include/seqan/seq_io/read_embl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seq_io/bam_sam.h' -> `./porechop/include/seqan/seq_io/bam_sam.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seq_io/fasta_fastq.h' -> `./porechop/include/seqan/seq_io/fasta_fastq.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seq_io/read_genbank.h' -> `./porechop/include/seqan/seq_io/read_genbank.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seq_io/genomic_region.h' -> `./porechop/include/seqan/seq_io/genomic_region.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seq_io/fai_index.h' -> `./porechop/include/seqan/seq_io/fai_index.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seq_io/sequence_file.h' -> `./porechop/include/seqan/seq_io/sequence_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/local_alignment_enumeration_unbanded.h' -> `./porechop/include/seqan/align/local_alignment_enumeration_unbanded.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_matrix.h' -> `./porechop/include/seqan/align/dp_matrix.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_profile.h' -> `./porechop/include/seqan/align/dp_profile.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/global_alignment_myers_hirschberg_impl.h' -> `./porechop/include/seqan/align/global_alignment_myers_hirschberg_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_formula_dynamic.h' -> `./porechop/include/seqan/align/dp_formula_dynamic.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/local_alignment_banded.h' -> `./porechop/include/seqan/align/local_alignment_banded.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/alignment_algorithm_tags.h' -> `./porechop/include/seqan/align/alignment_algorithm_tags.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/local_alignment_enumeration.h' -> `./porechop/include/seqan/align/local_alignment_enumeration.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/gaps_anchor.h' -> `./porechop/include/seqan/align/gaps_anchor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_formula_linear.h' -> `./porechop/include/seqan/align/dp_formula_linear.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/gap_anchor.h' -> `./porechop/include/seqan/align/gap_anchor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/global_alignment_hirschberg_impl.h' -> `./porechop/include/seqan/align/global_alignment_hirschberg_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/align_metafunctions.h' -> `./porechop/include/seqan/align/align_metafunctions.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_matrix_navigator.h' -> `./porechop/include/seqan/align/dp_matrix_navigator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_meta_info.h' -> `./porechop/include/seqan/align/dp_meta_info.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/align_cols.h' -> `./porechop/include/seqan/align/align_cols.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/gaps_iterator_anchor.h' -> `./porechop/include/seqan/align/gaps_iterator_anchor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h' -> `./porechop/include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/align_base.h' -> `./porechop/include/seqan/align/align_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/gaps_base.h' -> `./porechop/include/seqan/align/gaps_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_scout.h' -> `./porechop/include/seqan/align/dp_scout.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_cell_dynamic.h' -> `./porechop/include/seqan/align/dp_cell_dynamic.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_setup.h' -> `./porechop/include/seqan/align/dp_setup.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/align_traceback.h' -> `./porechop/include/seqan/align/align_traceback.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/alignment_operations.h' -> `./porechop/include/seqan/align/alignment_operations.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_traceback_adaptor.h' -> `./porechop/include/seqan/align/dp_traceback_adaptor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_matrix_navigator_trace_matrix.h' -> `./porechop/include/seqan/align/dp_matrix_navigator_trace_matrix.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_context.h' -> `./porechop/include/seqan/align/dp_context.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_traceback_impl.h' -> `./porechop/include/seqan/align/dp_traceback_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/align_config.h' -> `./porechop/include/seqan/align/align_config.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_formula_affine.h' -> `./porechop/include/seqan/align/dp_formula_affine.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_algorithm_impl.h' -> `./porechop/include/seqan/align/dp_algorithm_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/align_iterator_base.h' -> `./porechop/include/seqan/align/align_iterator_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/gaps_iterator_array.h' -> `./porechop/include/seqan/align/gaps_iterator_array.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_align_simd_helper.h' -> `./porechop/include/seqan/align/dp_align_simd_helper.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_matrix_navigator_score_matrix.h' -> `./porechop/include/seqan/align/dp_matrix_navigator_score_matrix.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/gapped_value_type.h' -> `./porechop/include/seqan/align/gapped_value_type.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/align_interface_wrapper.h' -> `./porechop/include/seqan/align/align_interface_wrapper.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/matrix_base.h' -> `./porechop/include/seqan/align/matrix_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/gaps_iterator_base.h' -> `./porechop/include/seqan/align/gaps_iterator_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/global_alignment_specialized.h' -> `./porechop/include/seqan/align/global_alignment_specialized.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/local_alignment_waterman_eggert_impl.h' -> `./porechop/include/seqan/align/local_alignment_waterman_eggert_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/global_alignment_unbanded.h' -> `./porechop/include/seqan/align/global_alignment_unbanded.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_cell_affine.h' -> `./porechop/include/seqan/align/dp_cell_affine.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_formula.h' -> `./porechop/include/seqan/align/dp_formula.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_band.h' -> `./porechop/include/seqan/align/dp_band.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/local_alignment_enumeration_banded.h' -> `./porechop/include/seqan/align/local_alignment_enumeration_banded.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_cell_linear.h' -> `./porechop/include/seqan/align/dp_cell_linear.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/fragment.h' -> `./porechop/include/seqan/align/fragment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h' -> `./porechop/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_scout_simd.h' -> `./porechop/include/seqan/align/dp_scout_simd.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/gaps_array.h' -> `./porechop/include/seqan/align/gaps_array.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_trace_segment.h' -> `./porechop/include/seqan/align/dp_trace_segment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/local_alignment_unbanded.h' -> `./porechop/include/seqan/align/local_alignment_unbanded.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/evaluate_alignment.h' -> `./porechop/include/seqan/align/evaluate_alignment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/global_alignment_banded.h' -> `./porechop/include/seqan/align/global_alignment_banded.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/global_alignment_myers_impl.h' -> `./porechop/include/seqan/align/global_alignment_myers_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_cell.h' -> `./porechop/include/seqan/align/dp_cell.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align/dp_matrix_sparse.h' -> `./porechop/include/seqan/align/dp_matrix_sparse.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/rna_header.h' -> `./porechop/include/seqan/rna_io/rna_header.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/rna_struct_file.h' -> `./porechop/include/seqan/rna_io/rna_struct_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/rna_record.h' -> `./porechop/include/seqan/rna_io/rna_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/dot_bracket_read_write.h' -> `./porechop/include/seqan/rna_io/dot_bracket_read_write.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/connect_read_write.h' -> `./porechop/include/seqan/rna_io/connect_read_write.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/stockholm_read_write.h' -> `./porechop/include/seqan/rna_io/stockholm_read_write.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/vienna_read_write.h' -> `./porechop/include/seqan/rna_io/vienna_read_write.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/ebpseq_read_write.h' -> `./porechop/include/seqan/rna_io/ebpseq_read_write.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/bpseq_read_write.h' -> `./porechop/include/seqan/rna_io/bpseq_read_write.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/rna_io/rna_io_context.h' -> `./porechop/include/seqan/rna_io/rna_io_context.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_alphabet_expansion.h' -> `./porechop/include/seqan/modifier/modifier_alphabet_expansion.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_view.h' -> `./porechop/include/seqan/modifier/modifier_view.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_string.h' -> `./porechop/include/seqan/modifier/modifier_string.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_shortcuts.h' -> `./porechop/include/seqan/modifier/modifier_shortcuts.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_iterator.h' -> `./porechop/include/seqan/modifier/modifier_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_padding.h' -> `./porechop/include/seqan/modifier/modifier_padding.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/cyclic_shape.h' -> `./porechop/include/seqan/modifier/cyclic_shape.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_alphabet.h' -> `./porechop/include/seqan/modifier/modifier_alphabet.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_cyclic_shape.h' -> `./porechop/include/seqan/modifier/modifier_cyclic_shape.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_functors.h' -> `./porechop/include/seqan/modifier/modifier_functors.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_reverse.h' -> `./porechop/include/seqan/modifier/modifier_reverse.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/modifier/modifier_position.h' -> `./porechop/include/seqan/modifier/modifier_position.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_namer.h' -> `./porechop/include/seqan/pipe/pipe_namer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_caster.h' -> `./porechop/include/seqan/pipe/pipe_caster.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_counter.h' -> `./porechop/include/seqan/pipe/pipe_counter.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_joiner.h' -> `./porechop/include/seqan/pipe/pipe_joiner.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_edit_environment.h' -> `./porechop/include/seqan/pipe/pipe_edit_environment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pool_base.h' -> `./porechop/include/seqan/pipe/pool_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_echoer.h' -> `./porechop/include/seqan/pipe/pipe_echoer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_tupler.h' -> `./porechop/include/seqan/pipe/pipe_tupler.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_sampler.h' -> `./porechop/include/seqan/pipe/pipe_sampler.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pool_mapper.h' -> `./porechop/include/seqan/pipe/pool_mapper.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_base.h' -> `./porechop/include/seqan/pipe/pipe_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_shifter.h' -> `./porechop/include/seqan/pipe/pipe_shifter.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_iterator.h' -> `./porechop/include/seqan/pipe/pipe_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_filter.h' -> `./porechop/include/seqan/pipe/pipe_filter.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pool_sorter.h' -> `./porechop/include/seqan/pipe/pool_sorter.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/pipe/pipe_source.h' -> `./porechop/include/seqan/pipe/pipe_source.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_forwards.h' -> `./porechop/include/seqan/index/index_forwards.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_sparse_string.h' -> `./porechop/include/seqan/index/index_fm_sparse_string.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_pizzachili.h' -> `./porechop/include/seqan/index/index_pizzachili.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_pizzachili_string.h' -> `./porechop/include/seqan/index/index_pizzachili_string.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_bidirectional.h' -> `./porechop/include/seqan/index/index_bidirectional.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/shape_minimizer.h' -> `./porechop/include/seqan/index/shape_minimizer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_quasar.h' -> `./porechop/include/seqan/index/find_quasar.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_esa_drawing.h' -> `./porechop/include/seqan/index/index_esa_drawing.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_skew7.h' -> `./porechop/include/seqan/index/index_skew7.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_esa_algs.h' -> `./porechop/include/seqan/index/index_esa_algs.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/shape_onegapped.h' -> `./porechop/include/seqan/index/shape_onegapped.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_view.h' -> `./porechop/include/seqan/index/index_view.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_bwt.h' -> `./porechop/include/seqan/index/index_bwt.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_rank_dictionary_wt.h' -> `./porechop/include/seqan/index/index_fm_rank_dictionary_wt.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/shape_gapped.h' -> `./porechop/include/seqan/index/shape_gapped.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_rank_dictionary_base.h' -> `./porechop/include/seqan/index/index_fm_rank_dictionary_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_childtab.h' -> `./porechop/include/seqan/index/index_childtab.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_bifm.h' -> `./porechop/include/seqan/index/index_bifm.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_right_array_binary_tree_iterator.h' -> `./porechop/include/seqan/index/index_fm_right_array_binary_tree_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_stree.h' -> `./porechop/include/seqan/index/index_fm_stree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/pizzachili_api.h' -> `./porechop/include/seqan/index/pizzachili_api.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_sa_btree.h' -> `./porechop/include/seqan/index/index_sa_btree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find2_functors.h' -> `./porechop/include/seqan/index/find2_functors.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_base.h' -> `./porechop/include/seqan/index/index_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find2_backtracking.h' -> `./porechop/include/seqan/index/find2_backtracking.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_qgram_openaddressing.h' -> `./porechop/include/seqan/index/index_qgram_openaddressing.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_bidirectional_stree.h' -> `./porechop/include/seqan/index/index_bidirectional_stree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_index_lambda.h' -> `./porechop/include/seqan/index/find_index_lambda.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_sa_lss.h' -> `./porechop/include/seqan/index/index_sa_lss.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/shape_threshold.h' -> `./porechop/include/seqan/index/shape_threshold.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_right_array_binary_tree.h' -> `./porechop/include/seqan/index/index_fm_right_array_binary_tree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_sa_qsort.h' -> `./porechop/include/seqan/index/index_sa_qsort.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/pump_lcp_core.h' -> `./porechop/include/seqan/index/pump_lcp_core.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_index_approx.h' -> `./porechop/include/seqan/index/find_index_approx.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/pump_separator7.h' -> `./porechop/include/seqan/index/pump_separator7.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_compressed_sa_iterator.h' -> `./porechop/include/seqan/index/index_fm_compressed_sa_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_dfi.h' -> `./porechop/include/seqan/index/index_dfi.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_index.h' -> `./porechop/include/seqan/index/find_index.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_qgram_stree.h' -> `./porechop/include/seqan/index/index_qgram_stree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find2_base.h' -> `./porechop/include/seqan/index/find2_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_shims.h' -> `./porechop/include/seqan/index/index_shims.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_compressed_sa.h' -> `./porechop/include/seqan/index/index_fm_compressed_sa.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/pump_extender3.h' -> `./porechop/include/seqan/index/pump_extender3.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_esa_stree.h' -> `./porechop/include/seqan/index/index_esa_stree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_lcp_tree.h' -> `./porechop/include/seqan/index/index_lcp_tree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_wotd.h' -> `./porechop/include/seqan/index/index_wotd.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_skew3.h' -> `./porechop/include/seqan/index/index_skew3.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_esa_base.h' -> `./porechop/include/seqan/index/index_esa_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_swift.h' -> `./porechop/include/seqan/index/find_swift.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/repeat_base.h' -> `./porechop/include/seqan/index/repeat_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find2_index_multi.h' -> `./porechop/include/seqan/index/find2_index_multi.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find2_index.h' -> `./porechop/include/seqan/index/find2_index.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_pigeonhole.h' -> `./porechop/include/seqan/index/find_pigeonhole.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_sa_truncated.h' -> `./porechop/include/seqan/index/index_sa_truncated.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_index_esa.h' -> `./porechop/include/seqan/index/find_index_esa.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_sa_bwtwalk.h' -> `./porechop/include/seqan/index/index_sa_bwtwalk.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_lcp.h' -> `./porechop/include/seqan/index/index_lcp.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_shawarma.h' -> `./porechop/include/seqan/index/index_shawarma.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_index_binary.h' -> `./porechop/include/seqan/index/find_index_binary.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_backtracking.h' -> `./porechop/include/seqan/index/find_backtracking.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find2_vstree_factory.h' -> `./porechop/include/seqan/index/find2_vstree_factory.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_pizzachili_find.h' -> `./porechop/include/seqan/index/index_pizzachili_find.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_skew7_multi.h' -> `./porechop/include/seqan/index/index_skew7_multi.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_sa_mm.h' -> `./porechop/include/seqan/index/index_sa_mm.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/shape_predefined.h' -> `./porechop/include/seqan/index/shape_predefined.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_sa_stree.h' -> `./porechop/include/seqan/index/index_sa_stree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_bifm_stree.h' -> `./porechop/include/seqan/index/index_bifm_stree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/pipe_merger3.h' -> `./porechop/include/seqan/index/pipe_merger3.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/find_index_qgram.h' -> `./porechop/include/seqan/index/find_index_qgram.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/pipe_merger7.h' -> `./porechop/include/seqan/index/pipe_merger7.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_device.h' -> `./porechop/include/seqan/index/index_device.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_esa_algs_multi.h' -> `./porechop/include/seqan/index/index_esa_algs_multi.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_qgram.h' -> `./porechop/include/seqan/index/index_qgram.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/shape_base.h' -> `./porechop/include/seqan/index/shape_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_rank_dictionary_levels.h' -> `./porechop/include/seqan/index/index_fm_rank_dictionary_levels.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/radix.h' -> `./porechop/include/seqan/index/radix.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm.h' -> `./porechop/include/seqan/index/index_fm.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_dox.h' -> `./porechop/include/seqan/index/index_fm_dox.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_rank_dictionary_naive.h' -> `./porechop/include/seqan/index/index_fm_rank_dictionary_naive.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_qgram_bucketrefinement.h' -> `./porechop/include/seqan/index/index_qgram_bucketrefinement.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/pump_extender7.h' -> `./porechop/include/seqan/index/pump_extender7.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/index/index_fm_lf_table.h' -> `./porechop/include/seqan/index/index_fm_lf_table.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_extend/align_extend_base.h' -> `./porechop/include/seqan/align_extend/align_extend_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_extend/align_extend.h' -> `./porechop/include/seqan/align_extend/align_extend.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/align_extend/dp_scout_xdrop.h' -> `./porechop/include/seqan/align_extend/dp_scout_xdrop.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/iostream_zip_impl.h' -> `./porechop/include/seqan/stream/iostream_zip_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/stream_base.h' -> `./porechop/include/seqan/stream/stream_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/buffered_stream.h' -> `./porechop/include/seqan/stream/buffered_stream.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/lexical_cast.h' -> `./porechop/include/seqan/stream/lexical_cast.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/guess_format.h' -> `./porechop/include/seqan/stream/guess_format.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/tokenization.h' -> `./porechop/include/seqan/stream/tokenization.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/iostream_bgzf.h' -> `./porechop/include/seqan/stream/iostream_bgzf.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/virtual_stream.h' -> `./porechop/include/seqan/stream/virtual_stream.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/adapt_ios.h' -> `./porechop/include/seqan/stream/adapt_ios.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/iter_stream.h' -> `./porechop/include/seqan/stream/iter_stream.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/iostream_zutil.h' -> `./porechop/include/seqan/stream/iostream_zutil.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/formatted_file.h' -> `./porechop/include/seqan/stream/formatted_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/iostream_bzip2_impl.h' -> `./porechop/include/seqan/stream/iostream_bzip2_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/stream_compressor.h' -> `./porechop/include/seqan/stream/stream_compressor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/iostream_bzip2.h' -> `./porechop/include/seqan/stream/iostream_bzip2.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/iostream_zip.h' -> `./porechop/include/seqan/stream/iostream_zip.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/stream/file_stream.h' -> `./porechop/include/seqan/stream/file_stream.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/kruskal.h' -> `./porechop/include/seqan/graph_algorithms/kruskal.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/weakly_connected_components.h' -> `./porechop/include/seqan/graph_algorithms/weakly_connected_components.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/breadth_first_search.h' -> `./porechop/include/seqan/graph_algorithms/breadth_first_search.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/weighted_bipartite_matching.h' -> `./porechop/include/seqan/graph_algorithms/weighted_bipartite_matching.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/all_pairs_shortest_path.h' -> `./porechop/include/seqan/graph_algorithms/all_pairs_shortest_path.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/floyd_warshall.h' -> `./porechop/include/seqan/graph_algorithms/floyd_warshall.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/depth_first_search.h' -> `./porechop/include/seqan/graph_algorithms/depth_first_search.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/prim.h' -> `./porechop/include/seqan/graph_algorithms/prim.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/bipartite_matching.h' -> `./porechop/include/seqan/graph_algorithms/bipartite_matching.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h' -> `./porechop/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/dijkstra.h' -> `./porechop/include/seqan/graph_algorithms/dijkstra.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/bellman_ford.h' -> `./porechop/include/seqan/graph_algorithms/bellman_ford.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/graph_algorithm_hmm.h' -> `./porechop/include/seqan/graph_algorithms/graph_algorithm_hmm.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/ford_fulkerson.h' -> `./porechop/include/seqan/graph_algorithms/ford_fulkerson.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/topological_sort.h' -> `./porechop/include/seqan/graph_algorithms/topological_sort.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/single_source_shortest_path.h' -> `./porechop/include/seqan/graph_algorithms/single_source_shortest_path.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/graph_algorithm_lis_his.h' -> `./porechop/include/seqan/graph_algorithms/graph_algorithm_lis_his.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/path_growing.h' -> `./porechop/include/seqan/graph_algorithms/path_growing.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/transitive_closure.h' -> `./porechop/include/seqan/graph_algorithms/transitive_closure.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/strongly_connected_compnents.h' -> `./porechop/include/seqan/graph_algorithms/strongly_connected_compnents.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_algorithms/connected_components.h' -> `./porechop/include/seqan/graph_algorithms/connected_components.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/basic_iter_indirect.h' -> `./porechop/include/seqan/seeds/basic_iter_indirect.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_combination.h' -> `./porechop/include/seqan/seeds/seeds_combination.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_global_chaining.h' -> `./porechop/include/seqan/seeds/seeds_global_chaining.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_seed_set_non_scored.h' -> `./porechop/include/seqan/seeds/seeds_seed_set_non_scored.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_seed_chained.h' -> `./porechop/include/seqan/seeds/seeds_seed_chained.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_extension.h' -> `./porechop/include/seqan/seeds/seeds_extension.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_seed_base.h' -> `./porechop/include/seqan/seeds/seeds_seed_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/banded_chain_alignment_profile.h' -> `./porechop/include/seqan/seeds/banded_chain_alignment_profile.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/banded_chain_alignment_impl.h' -> `./porechop/include/seqan/seeds/banded_chain_alignment_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_seed_diagonal.h' -> `./porechop/include/seqan/seeds/seeds_seed_diagonal.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_seed_set_scored.h' -> `./porechop/include/seqan/seeds/seeds_seed_set_scored.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/banded_chain_alignment_scout.h' -> `./porechop/include/seqan/seeds/banded_chain_alignment_scout.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_base.h' -> `./porechop/include/seqan/seeds/seeds_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/banded_chain_alignment_traceback.h' -> `./porechop/include/seqan/seeds/banded_chain_alignment_traceback.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_global_chaining_base.h' -> `./porechop/include/seqan/seeds/seeds_global_chaining_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_seed_set_unordered.h' -> `./porechop/include/seqan/seeds/seeds_seed_set_unordered.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_seed_simple.h' -> `./porechop/include/seqan/seeds/seeds_seed_simple.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/banded_chain_alignment.h' -> `./porechop/include/seqan/seeds/banded_chain_alignment.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_global_chaining_gusfield.h' -> `./porechop/include/seqan/seeds/seeds_global_chaining_gusfield.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/seeds/seeds_seed_set_base.h' -> `./porechop/include/seqan/seeds/seeds_seed_set_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence_journaled/sequence_journaled_iterator.h' -> `./porechop/include/seqan/sequence_journaled/sequence_journaled_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h' -> `./porechop/include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence_journaled/sequence_journaled.h' -> `./porechop/include/seqan/sequence_journaled/sequence_journaled.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence_journaled/journal_entries_sorted_array.h' -> `./porechop/include/seqan/sequence_journaled/journal_entries_sorted_array.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/sequence_journaled/journal_entry.h' -> `./porechop/include/seqan/sequence_journaled/journal_entry.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/system/system_forwards.h' -> `./porechop/include/seqan/system/system_forwards.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/system/file_forwards.h' -> `./porechop/include/seqan/system/file_forwards.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/system/file_sync.h' -> `./porechop/include/seqan/system/file_sync.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/system/file_directory.h' -> `./porechop/include/seqan/system/file_directory.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/system/file_async.h' -> `./porechop/include/seqan/system/file_async.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/system/system_event_win.h' -> `./porechop/include/seqan/system/system_event_win.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/system/system_base.h' -> `./porechop/include/seqan/system/system_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_hamming_simple.h' -> `./porechop/include/seqan/find/find_hamming_simple.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_shiftand.h' -> `./porechop/include/seqan/find/find_shiftand.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_abndm.h' -> `./porechop/include/seqan/find/find_abndm.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_myers_ukkonen.h' -> `./porechop/include/seqan/find/find_myers_ukkonen.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_pex.h' -> `./porechop/include/seqan/find/find_pex.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_multi.h' -> `./porechop/include/seqan/find/find_multi.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_wumanber.h' -> `./porechop/include/seqan/find/find_wumanber.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_horspool.h' -> `./porechop/include/seqan/find/find_horspool.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_multiple_bfam.h' -> `./porechop/include/seqan/find/find_multiple_bfam.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_score.h' -> `./porechop/include/seqan/find/find_score.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_set_horspool.h' -> `./porechop/include/seqan/find/find_set_horspool.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_simple.h' -> `./porechop/include/seqan/find/find_simple.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_multiple_shiftand.h' -> `./porechop/include/seqan/find/find_multiple_shiftand.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_shiftor.h' -> `./porechop/include/seqan/find/find_shiftor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_pattern_base.h' -> `./porechop/include/seqan/find/find_pattern_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_ahocorasick.h' -> `./porechop/include/seqan/find/find_ahocorasick.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_bndm.h' -> `./porechop/include/seqan/find/find_bndm.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_lambda.h' -> `./porechop/include/seqan/find/find_lambda.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_wild_shiftand.h' -> `./porechop/include/seqan/find/find_wild_shiftand.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_bom.h' -> `./porechop/include/seqan/find/find_bom.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_base.h' -> `./porechop/include/seqan/find/find_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/find/find_begin.h' -> `./porechop/include/seqan/find/find_begin.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score/score_simd_wrapper.h' -> `./porechop/include/seqan/score/score_simd_wrapper.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score/score_matrix.h' -> `./porechop/include/seqan/score/score_matrix.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score/score_matrix_data.h' -> `./porechop/include/seqan/score/score_matrix_data.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score/score_matrix_dyn.h' -> `./porechop/include/seqan/score/score_matrix_dyn.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score/score_base.h' -> `./porechop/include/seqan/score/score_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score/score_matrix_io.h' -> `./porechop/include/seqan/score/score_matrix_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score/score_edit.h' -> `./porechop/include/seqan/score/score_edit.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/score/score_simple.h' -> `./porechop/include/seqan/score/score_simple.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h' -> `./porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h' -> `./porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_base.h' -> `./porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h' -> `./porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h' -> `./porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h' -> `./porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h' -> `./porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h' -> `./porechop/include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_sequence.h' -> `./porechop/include/seqan/parallel/parallel_sequence.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_queue.h' -> `./porechop/include/seqan/parallel/parallel_queue.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_splitting.h' -> `./porechop/include/seqan/parallel/parallel_splitting.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_atomic_primitives.h' -> `./porechop/include/seqan/parallel/parallel_atomic_primitives.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_tags.h' -> `./porechop/include/seqan/parallel/parallel_tags.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_algorithms.h' -> `./porechop/include/seqan/parallel/parallel_algorithms.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_macros.h' -> `./porechop/include/seqan/parallel/parallel_macros.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_resource_pool.h' -> `./porechop/include/seqan/parallel/parallel_resource_pool.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_serializer.h' -> `./porechop/include/seqan/parallel/parallel_serializer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_lock.h' -> `./porechop/include/seqan/parallel/parallel_lock.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_queue_suspendable.h' -> `./porechop/include/seqan/parallel/parallel_queue_suspendable.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/parallel/parallel_atomic_misc.h' -> `./porechop/include/seqan/parallel/parallel_atomic_misc.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/translation/translation.h' -> `./porechop/include/seqan/translation/translation.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/translation/translation_tables.h' -> `./porechop/include/seqan/translation/translation_tables.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_progressive.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_progressive.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_library.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_library.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_io.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_io.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_msa.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_msa.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_base.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_distance.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_distance.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_kmer.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_kmer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/graph_msa/graph_align_tcoffee_refinement.h' -> `./porechop/include/seqan/graph_msa/graph_align_tcoffee_refinement.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/alignment_free/kmer_functions.h' -> `./porechop/include/seqan/alignment_free/kmer_functions.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/alignment_free/alignment_free_base.h' -> `./porechop/include/seqan/alignment_free/alignment_free_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/alignment_free/alignment_free_comparison.h' -> `./porechop/include/seqan/alignment_free/alignment_free_comparison.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/alignment_free/af_d2z.h' -> `./porechop/include/seqan/alignment_free/af_d2z.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/alignment_free/af_d2star.h' -> `./porechop/include/seqan/alignment_free/af_d2star.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/alignment_free/af_n2.h' -> `./porechop/include/seqan/alignment_free/af_n2.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/alignment_free/af_d2.h' -> `./porechop/include/seqan/alignment_free/af_d2.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/metaprogramming_type.h' -> `./porechop/include/seqan/basic/metaprogramming_type.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_zip.h' -> `./porechop/include/seqan/basic/iterator_zip.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_allocator.h' -> `./porechop/include/seqan/basic/basic_allocator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_adaptor.h' -> `./porechop/include/seqan/basic/iterator_adaptor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_concept.h' -> `./porechop/include/seqan/basic/alphabet_concept.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/holder_tristate.h' -> `./porechop/include/seqan/basic/holder_tristate.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/holder_simple.h' -> `./porechop/include/seqan/basic/holder_simple.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/allocator_interface.h' -> `./porechop/include/seqan/basic/allocator_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/container_concept.h' -> `./porechop/include/seqan/basic/container_concept.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_metaprogramming.h' -> `./porechop/include/seqan/basic/basic_metaprogramming.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/fundamental_transport.h' -> `./porechop/include/seqan/basic/fundamental_transport.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_position.h' -> `./porechop/include/seqan/basic/iterator_position.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_residue_tabs.h' -> `./porechop/include/seqan/basic/alphabet_residue_tabs.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/metaprogramming_type_algebra.h' -> `./porechop/include/seqan/basic/metaprogramming_type_algebra.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_container.h' -> `./porechop/include/seqan/basic/basic_container.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/metaprogramming_enable_if.h' -> `./porechop/include/seqan/basic/metaprogramming_enable_if.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/hosted_type_interface.h' -> `./porechop/include/seqan/basic/hosted_type_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/concept_checking.h' -> `./porechop/include/seqan/basic/concept_checking.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_residue_funcs.h' -> `./porechop/include/seqan/basic/alphabet_residue_funcs.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/proxy_iterator.h' -> `./porechop/include/seqan/basic/proxy_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/debug_test_system.h' -> `./porechop/include/seqan/basic/debug_test_system.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/property_map_concept.h' -> `./porechop/include/seqan/basic/property_map_concept.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_iterator.h' -> `./porechop/include/seqan/basic/basic_iterator.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/pair_packed.h' -> `./porechop/include/seqan/basic/pair_packed.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_view.h' -> `./porechop/include/seqan/basic/basic_view.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/tuple_base.h' -> `./porechop/include/seqan/basic/tuple_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_debug.h' -> `./porechop/include/seqan/basic/basic_debug.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_concept.h' -> `./porechop/include/seqan/basic/iterator_concept.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_math.h' -> `./porechop/include/seqan/basic/basic_math.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_tangle.h' -> `./porechop/include/seqan/basic/basic_tangle.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_concept.h' -> `./porechop/include/seqan/basic/basic_concept.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_parallelism.h' -> `./porechop/include/seqan/basic/basic_parallelism.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/fundamental_metafunctions.h' -> `./porechop/include/seqan/basic/fundamental_metafunctions.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/metaprogramming_logic.h' -> `./porechop/include/seqan/basic/metaprogramming_logic.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/fundamental_concepts.h' -> `./porechop/include/seqan/basic/fundamental_concepts.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_simd_vector.h' -> `./porechop/include/seqan/basic/basic_simd_vector.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/fundamental_conversion.h' -> `./porechop/include/seqan/basic/fundamental_conversion.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/array_construct_destruct.h' -> `./porechop/include/seqan/basic/array_construct_destruct.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_counting.h' -> `./porechop/include/seqan/basic/iterator_counting.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/metaprogramming_math.h' -> `./porechop/include/seqan/basic/metaprogramming_math.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/volatile_ptr.h' -> `./porechop/include/seqan/basic/volatile_ptr.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/fundamental_tags.h' -> `./porechop/include/seqan/basic/fundamental_tags.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/aggregate_concept.h' -> `./porechop/include/seqan/basic/aggregate_concept.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_storage.h' -> `./porechop/include/seqan/basic/alphabet_storage.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/proxy_base.h' -> `./porechop/include/seqan/basic/proxy_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_stream.h' -> `./porechop/include/seqan/basic/basic_stream.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_proxy.h' -> `./porechop/include/seqan/basic/basic_proxy.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_adapt_std.h' -> `./porechop/include/seqan/basic/iterator_adapt_std.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/boost_preprocessor_subset.h' -> `./porechop/include/seqan/basic/boost_preprocessor_subset.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/metaprogramming_control.h' -> `./porechop/include/seqan/basic/metaprogramming_control.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/allocator_multipool.h' -> `./porechop/include/seqan/basic/allocator_multipool.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_interface.h' -> `./porechop/include/seqan/basic/iterator_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_math.h' -> `./porechop/include/seqan/basic/alphabet_math.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/allocator_singlepool.h' -> `./porechop/include/seqan/basic/allocator_singlepool.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_fundamental.h' -> `./porechop/include/seqan/basic/basic_fundamental.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/builtin_functions.h' -> `./porechop/include/seqan/basic/builtin_functions.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_smart_pointer.h' -> `./porechop/include/seqan/basic/basic_smart_pointer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_qualities.h' -> `./porechop/include/seqan/basic/alphabet_qualities.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_adapt_builtins.h' -> `./porechop/include/seqan/basic/alphabet_adapt_builtins.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/triple_packed.h' -> `./porechop/include/seqan/basic/triple_packed.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/holder_base.h' -> `./porechop/include/seqan/basic/holder_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_device.h' -> `./porechop/include/seqan/basic/basic_device.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_simple_type.h' -> `./porechop/include/seqan/basic/alphabet_simple_type.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/tuple_bit_compressed.h' -> `./porechop/include/seqan/basic/tuple_bit_compressed.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/fundamental_comparison.h' -> `./porechop/include/seqan/basic/fundamental_comparison.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_exception.h' -> `./porechop/include/seqan/basic/basic_exception.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/allocator_chunkpool.h' -> `./porechop/include/seqan/basic/allocator_chunkpool.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_profile.h' -> `./porechop/include/seqan/basic/alphabet_profile.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/debug_helper.h' -> `./porechop/include/seqan/basic/debug_helper.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_adapt_pointer.h' -> `./porechop/include/seqan/basic/iterator_adapt_pointer.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_aggregate.h' -> `./porechop/include/seqan/basic/basic_aggregate.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_residue.h' -> `./porechop/include/seqan/basic/alphabet_residue.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/math_functions.h' -> `./porechop/include/seqan/basic/math_functions.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/allocator_to_std.h' -> `./porechop/include/seqan/basic/allocator_to_std.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_type.h' -> `./porechop/include/seqan/basic/basic_type.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/pair_base.h' -> `./porechop/include/seqan/basic/pair_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_range.h' -> `./porechop/include/seqan/basic/iterator_range.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/allocator_simple.h' -> `./porechop/include/seqan/basic/allocator_simple.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/math_log_space_value.h' -> `./porechop/include/seqan/basic/math_log_space_value.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/triple_base.h' -> `./porechop/include/seqan/basic/triple_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/iterator_base.h' -> `./porechop/include/seqan/basic/iterator_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/pair_bit_compressed.h' -> `./porechop/include/seqan/basic/pair_bit_compressed.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/macro_deprecated.h' -> `./porechop/include/seqan/basic/macro_deprecated.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/fundamental_chunking.h' -> `./porechop/include/seqan/basic/fundamental_chunking.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/profiling.h' -> `./porechop/include/seqan/basic/profiling.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_alphabet.h' -> `./porechop/include/seqan/basic/basic_alphabet.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/basic_functors.h' -> `./porechop/include/seqan/basic/basic_functors.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/test_system.h' -> `./porechop/include/seqan/basic/test_system.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/basic/alphabet_bio.h' -> `./porechop/include/seqan/basic/alphabet_bio.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/vcf_io/write_vcf.h' -> `./porechop/include/seqan/vcf_io/write_vcf.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/vcf_io/vcf_record.h' -> `./porechop/include/seqan/vcf_io/vcf_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/vcf_io/vcf_file.h' -> `./porechop/include/seqan/vcf_io/vcf_file.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/vcf_io/read_vcf.h' -> `./porechop/include/seqan/vcf_io/read_vcf.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/vcf_io/vcf_header.h' -> `./porechop/include/seqan/vcf_io/vcf_header.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/vcf_io/vcf_io_context.h' -> `./porechop/include/seqan/vcf_io/vcf_io_context.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/vcf_io/vcf_header_record.h' -> `./porechop/include/seqan/vcf_io/vcf_header_record.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/arg_parse_ctd_support.h' -> `./porechop/include/seqan/arg_parse/arg_parse_ctd_support.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/argument_parser.h' -> `./porechop/include/seqan/arg_parse/argument_parser.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/arg_parse_type_support.h' -> `./porechop/include/seqan/arg_parse/arg_parse_type_support.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/arg_parse_option.h' -> `./porechop/include/seqan/arg_parse/arg_parse_option.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/arg_parse_argument.h' -> `./porechop/include/seqan/arg_parse/arg_parse_argument.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/arg_parse_doc.h' -> `./porechop/include/seqan/arg_parse/arg_parse_doc.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/arg_parse_parse.h' -> `./porechop/include/seqan/arg_parse/arg_parse_parse.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/arg_parse_version_check.h' -> `./porechop/include/seqan/arg_parse/arg_parse_version_check.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/arg_parse_exceptions.h' -> `./porechop/include/seqan/arg_parse/arg_parse_exceptions.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/tool_doc.h' -> `./porechop/include/seqan/arg_parse/tool_doc.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/arg_parse/xml_support.h' -> `./porechop/include/seqan/arg_parse/xml_support.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journaled_set_join.h' -> `./porechop/include/seqan/journaled_set/journaled_set_join.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journaled_set_journal_trace_descriptor.h' -> `./porechop/include/seqan/journaled_set/journaled_set_journal_trace_descriptor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journaled_set_join_config.h' -> `./porechop/include/seqan/journaled_set/journaled_set_join_config.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journaled_set_join_global_align_manhatten.h' -> `./porechop/include/seqan/journaled_set/journaled_set_join_global_align_manhatten.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journaled_set_base.h' -> `./porechop/include/seqan/journaled_set/journaled_set_base.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journaled_set_join_global_align_compact.h' -> `./porechop/include/seqan/journaled_set/journaled_set_join_global_align_compact.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journal_alignment_interface.h' -> `./porechop/include/seqan/journaled_set/journal_alignment_interface.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/score_biaffine.h' -> `./porechop/include/seqan/journaled_set/score_biaffine.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journal_alignment_traceback_adaptor.h' -> `./porechop/include/seqan/journaled_set/journal_alignment_traceback_adaptor.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/include/seqan/journaled_set/journaled_set_impl.h' -> `./porechop/include/seqan/journaled_set/journaled_set_impl.h'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/src/adapter_align.cpp' -> `./porechop/src/adapter_align.cpp'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/porechop/src/alignment.cpp' -> `./porechop/src/alignment.cpp'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format_barcodes.fasta' -> `./test/test_format_barcodes.fasta'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_barcodes.fastq' -> `./test/test_barcodes.fastq'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format.fastq' -> `./test/test_format.fastq'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format_barcodes.fasta.gz' -> `./test/test_format_barcodes.fasta.gz'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_choose_barcodes.py' -> `./test/test_choose_barcodes.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format_barcodes.fastq.gz' -> `./test/test_format_barcodes.fastq.gz'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_one_adapter_set.txt' -> `./test/test_one_adapter_set.txt'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_barcodes.py' -> `./test/test_barcodes.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_albacore_directory.txt' -> `./test/test_albacore_directory.txt'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_two_adapter_sets.txt' -> `./test/test_two_adapter_sets.txt'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format.fasta.gz' -> `./test/test_format.fasta.gz'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_two_adapter_sets.fastq' -> `./test/test_two_adapter_sets.fastq'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_albacore_directory.py' -> `./test/test_albacore_directory.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_choose_barcodes_1.fasta' -> `./test/test_choose_barcodes_1.fasta'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format.py' -> `./test/test_format.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_one_adapter_set.fastq' -> `./test/test_one_adapter_set.fastq'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/__init__.py' -> `./test/__init__.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format_barcodes.fastq' -> `./test/test_format_barcodes.fastq'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format.fasta' -> `./test/test_format.fasta'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/README.md' -> `./test/README.md'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_choose_barcodes.txt' -> `./test/test_choose_barcodes.txt'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_choose_barcodes_2.fasta' -> `./test/test_choose_barcodes_2.fasta'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_one_adapter_set.py' -> `./test/test_one_adapter_set.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_barcodes.txt' -> `./test/test_barcodes.txt'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_two_adapter_sets.py' -> `./test/test_two_adapter_sets.py'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_format.fastq.gz' -> `./test/test_format.fastq.gz'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_albacore_directory/workspace/unclassified/fastq_runid_e1df3d311cc267665db81df4aa863d073b0494ae_0.fastq' -> `./test/test_albacore_directory/workspace/unclassified/fastq_runid_e1df3d311cc267665db81df4aa863d073b0494ae_0.fastq'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_albacore_directory/workspace/barcode02/fastq_runid_e1df3d311cc267665db81df4aa863d073b0494ae_0.fastq' -> `./test/test_albacore_directory/workspace/barcode02/fastq_runid_e1df3d311cc267665db81df4aa863d073b0494ae_0.fastq'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_albacore_directory/workspace/barcode03/fastq_runid_e1df3d311cc267665db81df4aa863d073b0494ae_0.fastq' -> `./test/test_albacore_directory/workspace/barcode03/fastq_runid_e1df3d311cc267665db81df4aa863d073b0494ae_0.fastq'
`/gnu/store/bcmn48bhs221kr2avjzwhhp7s0jzq3qc-porechop-0.2.3-1.289d5dc-checkout/test/test_albacore_directory/workspace/barcode01/fastq_runid_e1df3d311cc267665db81df4aa863d073b0494ae_0.fastq' -> `./test/test_albacore_directory/workspace/barcode01/fastq_runid_e1df3d311cc267665db81df4aa863d073b0494ae_0.fastq'
phase `unpack' succeeded after 0.0 seconds
starting phase `ensure-no-mtimes-pre-1980'
phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds
starting phase `enable-bytecode-determinism'
phase `enable-bytecode-determinism' succeeded after 0.0 seconds
starting phase `ensure-no-cythonized-files'
phase `ensure-no-cythonized-files' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./ez_setup.py: changing `/usr/bin/env python3' to `/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/bin/python3'
patch-shebang: ./porechop-runner.py: changing `/usr/bin/env python3' to `/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/bin/python3'
patch-shebang: ./porechop/nanopore_read.py: changing `/usr/bin/env python3' to `/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/bin/python3'
patch-shebang: ./setup.py: changing `/usr/bin/env python3' to `/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/bin/python3'
phase `patch-source-shebangs' succeeded after 0.1 seconds
starting phase `patch-generated-file-shebangs'
patch-makefile-SHELL: ./Makefile: changing `SHELL' from `/bin/sh' to `/gnu/store/ak41ci13apcxh5ahd8lc9rv6l7bqnwym-bash-minimal-5.1.16/bin/sh'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
running "python setup.py" with command "build" and parameters ()
running build
running build_py
creating build
creating build/lib
creating build/lib/porechop
copying porechop/porechop.py -> build/lib/porechop
copying porechop/nanopore_read.py -> build/lib/porechop
copying porechop/__init__.py -> build/lib/porechop
copying porechop/version.py -> build/lib/porechop
copying porechop/cpp_function_wrappers.py -> build/lib/porechop
copying porechop/misc.py -> build/lib/porechop
copying porechop/adapters.py -> build/lib/porechop
warning: build_py: byte-compiling is disabled, skipping.

Cleaning previous compilation: make clean
rm -f porechop/src/adapter_align.o porechop/src/alignment.o
Compiling Porechop: make -j 8
g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -Wall -Wextra -pedantic -mtune=native -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp
g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -Wall -Wextra -pedantic -mtune=native -c -o porechop/src/alignment.o porechop/src/alignment.cpp
In file included from porechop/include/seqan/basic/basic_fundamental.h:82,
                 from porechop/include/seqan/basic.h:58,
                 from porechop/include/seqan/sequence.h:74,
                 from porechop/include/adapter_align.h:4,
                 from porechop/src/adapter_align.cpp:1:
porechop/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]’:
porechop/include/seqan/basic/array_construct_destruct.h:1199:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
porechop/include/seqan/basic/array_construct_destruct.h:1047:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
porechop/include/seqan/basic/array_construct_destruct.h:1066:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
porechop/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]’
porechop/include/seqan/sequence/string_base.h:1697:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]’
porechop/include/seqan/sequence/string_alloc.h:119:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
porechop/src/adapter_align.cpp:15:28:   required from here
porechop/include/seqan/basic/array_construct_destruct.h:1180:17: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1180 |     std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from porechop/include/seqan/basic/basic_alphabet.h:84,
                 from porechop/include/seqan/basic/basic_container.h:47,
                 from porechop/include/seqan/basic.h:71,
                 from porechop/include/seqan/sequence.h:74,
                 from porechop/include/adapter_align.h:4,
                 from porechop/src/adapter_align.cpp:1:
porechop/include/seqan/basic/alphabet_simple_type.h:131:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  131 | class SimpleType
      |       ^~~~~~~~~~
g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -Wall -Wextra -pedantic -mtune=native -shared -Wl,-soname,porechop/cpp_functions.so -o porechop/cpp_functions.so porechop/src/adapter_align.o porechop/src/alignment.o
phase `build' succeeded after 2.8 seconds
starting phase `install'
running "python setup.py" with command "install" and parameters ("--prefix=/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc" "--no-compile" "--single-version-externally-managed" "--root=/")
running install
/gnu/store/h619s650q7w3sv9nagrzlnynsrnds8yf-python-3.10.7/lib/python3.10/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
warning: build_py: byte-compiling is disabled, skipping.

Cleaning previous compilation: make clean
rm -f porechop/src/adapter_align.o porechop/src/alignment.o
Compiling Porechop: make -j 8
g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -Wall -Wextra -pedantic -mtune=native -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp
g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -Wall -Wextra -pedantic -mtune=native -c -o porechop/src/alignment.o porechop/src/alignment.cpp
In file included from porechop/include/seqan/basic/basic_fundamental.h:82,
                 from porechop/include/seqan/basic.h:58,
                 from porechop/include/seqan/sequence.h:74,
                 from porechop/include/adapter_align.h:4,
                 from porechop/src/adapter_align.cpp:1:
porechop/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]’:
porechop/include/seqan/basic/array_construct_destruct.h:1199:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
porechop/include/seqan/basic/array_construct_destruct.h:1047:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
porechop/include/seqan/basic/array_construct_destruct.h:1066:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
porechop/include/seqan/sequence/string_base.h:1683:27:   required from ‘void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]’
porechop/include/seqan/sequence/string_base.h:1697:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]’
porechop/include/seqan/sequence/string_alloc.h:119:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
porechop/src/adapter_align.cpp:15:28:   required from here
porechop/include/seqan/basic/array_construct_destruct.h:1180:17: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1180 |     std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from porechop/include/seqan/basic/basic_alphabet.h:84,
                 from porechop/include/seqan/basic/basic_container.h:47,
                 from porechop/include/seqan/basic.h:71,
                 from porechop/include/seqan/sequence.h:74,
                 from porechop/include/adapter_align.h:4,
                 from porechop/src/adapter_align.cpp:1:
porechop/include/seqan/basic/alphabet_simple_type.h:131:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  131 | class SimpleType
      |       ^~~~~~~~~~
g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -Wall -Wextra -pedantic -mtune=native -shared -Wl,-soname,porechop/cpp_functions.so -o porechop/cpp_functions.so porechop/src/adapter_align.o porechop/src/alignment.o
running install_lib
creating /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc
creating /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib
creating /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10
creating /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages
creating /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop
copying build/lib/porechop/porechop.py -> /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop
copying build/lib/porechop/nanopore_read.py -> /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop
copying build/lib/porechop/__init__.py -> /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop
copying build/lib/porechop/version.py -> /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop
copying build/lib/porechop/cpp_function_wrappers.py -> /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop
copying build/lib/porechop/misc.py -> /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop
copying build/lib/porechop/adapters.py -> /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop
warning: install_lib: byte-compiling is disabled, skipping.

running install_egg_info
running egg_info
creating porechop.egg-info
writing porechop.egg-info/PKG-INFO
writing dependency_links to porechop.egg-info/dependency_links.txt
writing entry points to porechop.egg-info/entry_points.txt
writing top-level names to porechop.egg-info/top_level.txt
writing manifest file 'porechop.egg-info/SOURCES.txt'
reading manifest file 'porechop.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'porechop.egg-info/SOURCES.txt'
Copying porechop.egg-info to /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop-0.2.3-py3.10.egg-info
running install_scripts
Installing porechop script to /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/bin
Listing '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc'...
Listing '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/bin'...
Listing '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib'...
Listing '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10'...
Listing '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages'...
Listing '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop'...
Compiling '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop/__init__.py'...
Compiling '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop/adapters.py'...
Compiling '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop/cpp_function_wrappers.py'...
Compiling '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop/misc.py'...
Compiling '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop/nanopore_read.py'...
Compiling '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop/porechop.py'...
Compiling '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop/version.py'...
Listing '/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages/porechop-0.2.3-py3.10.egg-info'...
phase `install' succeeded after 2.8 seconds
starting phase `add-install-to-pythonpath'
phase `add-install-to-pythonpath' succeeded after 0.0 seconds
starting phase `add-install-to-path'
phase `add-install-to-path' succeeded after 0.0 seconds
starting phase `wrap'
find-files: /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/sbin: No such file or directory
phase `wrap' succeeded after 0.0 seconds
starting phase `check'
running "python setup.py" with command "test" and parameters ()
running test
WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox.
running egg_info
writing porechop.egg-info/PKG-INFO
writing dependency_links to porechop.egg-info/dependency_links.txt
writing entry points to porechop.egg-info/entry_points.txt
writing top-level names to porechop.egg-info/top_level.txt
reading manifest file 'porechop.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'porechop.egg-info/SOURCES.txt'
running build_ext
test_choose_forward (test.test_choose_barcodes.TestBarcodes)
In this test, forward barcodes are more common and reverse barcodes should be ignored. ... ok
test_choose_reverse (test.test_choose_barcodes.TestBarcodes)
In this test, reverse barcodes are more common and forward barcodes should be ignored. ... ok
test_barcodes_1 (test.test_barcodes.TestBarcodes)
Tests with default settings. ... ok
test_barcodes_2 (test.test_barcodes.TestBarcodes)
Tests with --require_two_barcodes. ... ok
test_barcodes_3 (test.test_barcodes.TestBarcodes)
Tests with --untrimmed. ... ok
test_barcodes_4 (test.test_barcodes.TestBarcodes)
Tests with --discard_unassigned. ... ok
test_albacore_directory_1 (test.test_albacore_directory.TestAlbacoreDirectory)
When just the barcode01 reads are given as a single file, Porechop doesn't treat it as ... ok
test_albacore_directory_2 (test.test_albacore_directory.TestAlbacoreDirectory)
When just the barcode02 reads are given as a single file, Porechop doesn't treat it as ... ok
test_albacore_directory_3 (test.test_albacore_directory.TestAlbacoreDirectory)
When just the barcode03 reads are given as a single file, Porechop doesn't treat it as ... ok
test_albacore_directory_all (test.test_albacore_directory.TestAlbacoreDirectory)
When the whole directory is given as input, it's treated as an Albacore directory and reads ... ok
test_albacore_directory_unclassified (test.test_albacore_directory.TestAlbacoreDirectory)
When just the unclassified reads are given as a single file, Porechop doesn't treat it as ... ok
test_auto_format_fasta_gz_to_pipe (test.test_format.TestOutputFormat) ... ok
test_auto_format_fasta_to_pipe (test.test_format.TestOutputFormat) ... ok
test_auto_format_fastq_gz_to_pipe (test.test_format.TestOutputFormat) ... ok
test_auto_format_fastq_to_fasta (test.test_format.TestOutputFormat) ... ok
test_auto_format_fastq_to_fasta_gz (test.test_format.TestOutputFormat) ... ok
test_auto_format_fastq_to_fastq (test.test_format.TestOutputFormat) ... ok
test_auto_format_fastq_to_fastq_gz (test.test_format.TestOutputFormat) ... ok
test_auto_format_fastq_to_fastq_gz_weird_caps (test.test_format.TestOutputFormat) ... ok
test_auto_format_fastq_to_pipe (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fasta_to_fasta (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fasta_to_fasta_gz (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fastq_to_fasta (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fastq_to_fasta_gz (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fastq_to_fasta_gz_conflicting_name_1 (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fastq_to_fasta_gz_conflicting_name_2 (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fastq_to_fastq (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fastq_to_fastq_conflicting_name_1 (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fastq_to_fastq_conflicting_name_2 (test.test_format.TestOutputFormat) ... ok
test_explicit_format_fastq_to_fastq_gz (test.test_format.TestOutputFormat) ... ok
test_auto_format_fasta_gz_to_fasta_gz (test.test_format.TestOutputFormatBarcodes) ... ok
test_auto_format_fasta_to_fasta (test.test_format.TestOutputFormatBarcodes) ... ok
test_auto_format_fastq_gz_to_fastq_gz (test.test_format.TestOutputFormatBarcodes) ... ok
test_auto_format_fastq_to_fastq (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fasta_gz_to_fasta (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fasta_gz_to_fasta_gz (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fasta_to_fasta (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fasta_to_fasta_gz (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fastq_gz_to_fastq (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fastq_gz_to_fastq_gz (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fastq_to_fasta (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fastq_to_fasta_gz (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fastq_to_fastq (test.test_format.TestOutputFormatBarcodes) ... ok
test_explicit_format_fastq_to_fastq_gz (test.test_format.TestOutputFormatBarcodes) ... ok
test_adapter_threshold_1 (test.test_one_adapter_set.TestOneAdapterSet)
When only two reads are checked with an adapter threshold of 100%, no adapters are found ... ok
test_adapter_threshold_2 (test.test_one_adapter_set.TestOneAdapterSet)
When the adapter threshold is lowered to 90%, Porechop finds the adapter in read 2.. ... ok
test_check_reads (test.test_one_adapter_set.TestOneAdapterSet)
When only one read is checked, no adapters are found and nothing is trimmed. ... ok
test_end_size_1 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_end_size_2 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_end_size_3 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_extra_end_trim_1 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_extra_end_trim_2 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_extra_end_trim_3 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_extra_middle_trim_1 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_extra_middle_trim_2 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_middle_threshold_1 (test.test_one_adapter_set.TestOneAdapterSet)
Read 6 has an inexact match for the start adapter, so increasing the middle_threshold ... ok
test_middle_threshold_2 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_split_read_size_1 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_split_read_size_2 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_split_read_size_3 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_split_read_size_4 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_split_read_size_5 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_split_read_size_6 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_split_read_size_7 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_trim_size_1 (test.test_one_adapter_set.TestOneAdapterSet)
Increasing this setting will filter out the adapter trimming from read 7. ... ok
test_min_trim_size_2 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_min_trim_size_3 (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_multi_threaded (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_piped_output (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_results_gz_fasta (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_results_gz_fastq (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_results_normal_fasta (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_results_normal_fastq (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_results_piped_fasta (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_results_piped_fastq (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_single_threaded (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_verbosity_0_output (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_verbosity_1_output (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_verbosity_2_output (test.test_one_adapter_set.TestOneAdapterSet) ... ok
test_check_reads_1 (test.test_two_adapter_sets.TestTwoAdapterSets)
When only one read is checked, no adapters are found and nothing is trimmed. ... ok
test_check_reads_2 (test.test_two_adapter_sets.TestTwoAdapterSets)
When only two reads are checked, only one adapter set is found. ... ok
test_check_reads_3 (test.test_two_adapter_sets.TestTwoAdapterSets)
When three reads are checked, both adapter sets are found. ... ok
test_results_gz_fastq (test.test_two_adapter_sets.TestTwoAdapterSets) ... ok
test_results_normal_fastq (test.test_two_adapter_sets.TestTwoAdapterSets) ... ok
test_results_piped_fastq (test.test_two_adapter_sets.TestTwoAdapterSets) ... ok

----------------------------------------------------------------------
Ran 85 tests in 12.827s

OK
phase `check' succeeded after 13.0 seconds
starting phase `sanity-check'
validating 'porechop' /gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib/python3.10/site-packages
...checking requirements: OK
...trying to load module porechop: OK
...trying to load endpoint console_scripts porechop: OK
phase `sanity-check' succeeded after 0.1 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `rename-pth-file'
phase `rename-pth-file' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
stripping binaries in "/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/lib"...
validating RUNPATH of 0 binaries in "/gnu/store/h15lh2rqm6pnzb7jlamlj2h07yf51980-porechop-0.2.3-1.289d5dc/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds