WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete'
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/j3n97d19k6ssqj6756di677sdl24fv63-python2-2.7.18/bin:/gnu/store/d8kx7i62bzcd8ladkzwrchcrd60f7bfj-tar-1.34/bin:/gnu/store/6ascvgl36zxymlpldh8x8igv7pkizi5s-gzip-1.10/bin:/gnu/store/dmca74p8b9ik05mrsnvbviflbxrz9qaw-bzip2-1.0.8/bin:/gnu/store/s3577mn5iz2gjgkrava2sm914bgbnkd8-xz-5.2.5/bin:/gnu/store/61b8q6rgdfgd2ffdnyqk6gq2ckrnm007-file-5.39/bin:/gnu/store/2mvffg3isy144py579g5ajwyjh04xbmp-diffutils-3.8/bin:/gnu/store/b34jl32gsdw4rvm78a82m4q50i6p1d7l-patch-2.7.6/bin:/gnu/store/zxaz9cg2b7x6c1z545x861zqllj8vz6h-findutils-4.8.0/bin:/gnu/store/sb75h0di8w5mhpn4wfhk7za6c7x3c97c-gawk-5.1.0/bin:/gnu/store/skrsx5h5h011al604grc3rqa2dhqp2wc-sed-4.8/bin:/gnu/store/vl9pxlycbk5ff0i7jbgyrh0rb2dl07lx-grep-3.6/bin:/gnu/store/firkqph0zalxwjv5g4cdjm4zh3kl3fax-coreutils-8.32/bin:/gnu/store/zjhq95bn5kmlhiqdsvcyy1nhyphxi8yb-make-4.3/bin:/gnu/store/7npwsymmqsb6qcn268cbdnd5558byfy2-bash-minimal-5.1.8/bin:/gnu/store/zhpqig154gpqkgc964wmdnf6b889jfsq-ld-wrapper-0/bin:/gnu/store/h8052068pq3a6rc903982ad2dd5ssxgk-binutils-2.37/bin:/gnu/store/ky9xbrj6slwvgwa4536xbs5lradbqfk5-gcc-10.3.0/bin:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/bin:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/sbin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/j3n97d19k6ssqj6756di677sdl24fv63-python2-2.7.18/lib/python2.7/site-packages'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/j3n97d19k6ssqj6756di677sdl24fv63-python2-2.7.18/include:/gnu/store/dmca74p8b9ik05mrsnvbviflbxrz9qaw-bzip2-1.0.8/include:/gnu/store/s3577mn5iz2gjgkrava2sm914bgbnkd8-xz-5.2.5/include:/gnu/store/61b8q6rgdfgd2ffdnyqk6gq2ckrnm007-file-5.39/include:/gnu/store/sb75h0di8w5mhpn4wfhk7za6c7x3c97c-gawk-5.1.0/include:/gnu/store/zjhq95bn5kmlhiqdsvcyy1nhyphxi8yb-make-4.3/include:/gnu/store/h8052068pq3a6rc903982ad2dd5ssxgk-binutils-2.37/include:/gnu/store/ky9xbrj6slwvgwa4536xbs5lradbqfk5-gcc-10.3.0/include:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/include:/gnu/store/swpaxgk7xzgs4lkmw450wiak8iy8snsm-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/j3n97d19k6ssqj6756di677sdl24fv63-python2-2.7.18/include:/gnu/store/dmca74p8b9ik05mrsnvbviflbxrz9qaw-bzip2-1.0.8/include:/gnu/store/s3577mn5iz2gjgkrava2sm914bgbnkd8-xz-5.2.5/include:/gnu/store/61b8q6rgdfgd2ffdnyqk6gq2ckrnm007-file-5.39/include:/gnu/store/sb75h0di8w5mhpn4wfhk7za6c7x3c97c-gawk-5.1.0/include:/gnu/store/zjhq95bn5kmlhiqdsvcyy1nhyphxi8yb-make-4.3/include:/gnu/store/h8052068pq3a6rc903982ad2dd5ssxgk-binutils-2.37/include:/gnu/store/ky9xbrj6slwvgwa4536xbs5lradbqfk5-gcc-10.3.0/include/c++:/gnu/store/ky9xbrj6slwvgwa4536xbs5lradbqfk5-gcc-10.3.0/include:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/include:/gnu/store/swpaxgk7xzgs4lkmw450wiak8iy8snsm-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/j3n97d19k6ssqj6756di677sdl24fv63-python2-2.7.18/lib:/gnu/store/dmca74p8b9ik05mrsnvbviflbxrz9qaw-bzip2-1.0.8/lib:/gnu/store/s3577mn5iz2gjgkrava2sm914bgbnkd8-xz-5.2.5/lib:/gnu/store/61b8q6rgdfgd2ffdnyqk6gq2ckrnm007-file-5.39/lib:/gnu/store/sb75h0di8w5mhpn4wfhk7za6c7x3c97c-gawk-5.1.0/lib:/gnu/store/h8052068pq3a6rc903982ad2dd5ssxgk-binutils-2.37/lib:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/lib:/gnu/store/66nrq0ra6d3jnsc24cms9lgzbyb9spr8-glibc-2.33-static/lib:/gnu/store/mnxbr2w45qrfi4bi7khl2yj56rjz9vbi-glibc-utf8-locales-2.33/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/mnxbr2w45qrfi4bi7khl2yj56rjz9vbi-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/README.md' -> `./README.md'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/license.txt' -> `./license.txt'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/.gitattributes' -> `./.gitattributes'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/DataTypes.hpp' -> `./source/DataTypes.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/LinearRegression.hpp' -> `./source/LinearRegression.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/dep.py' -> `./source/dep.py'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/DiversityCalculator.cpp' -> `./source/DiversityCalculator.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/ExpressBetaDiversity.cpp' -> `./source/ExpressBetaDiversity.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/Cluster.cpp' -> `./source/Cluster.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/Tree.hpp' -> `./source/Tree.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/NewickIO.hpp' -> `./source/NewickIO.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/NeighbourJoining.hpp' -> `./source/NeighbourJoining.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/StringTools.cpp' -> `./source/StringTools.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/Makefile' -> `./source/Makefile'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/getopt_pp.cpp' -> `./source/getopt_pp.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/StringTools.hpp' -> `./source/StringTools.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/DiversityCalculator.hpp' -> `./source/DiversityCalculator.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/generic.mk' -> `./source/generic.mk'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/Precompiled.cpp' -> `./source/Precompiled.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/SeqCountIO.cpp' -> `./source/SeqCountIO.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/LinearRegression.cpp' -> `./source/LinearRegression.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/Node.hpp' -> `./source/Node.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/UnitTests.hpp' -> `./source/UnitTests.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/NeighbourJoining.cpp' -> `./source/NeighbourJoining.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/Node.cpp' -> `./source/Node.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/UnitTests.cpp' -> `./source/UnitTests.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/SeqCountIO.hpp' -> `./source/SeqCountIO.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/NewickIO.cpp' -> `./source/NewickIO.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/getopt_pp.hpp' -> `./source/getopt_pp.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/DataVectorizer.hpp' -> `./source/DataVectorizer.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/DataVectorizer.cpp' -> `./source/DataVectorizer.cpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/Precompiled.hpp' -> `./source/Precompiled.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/source/Cluster.hpp' -> `./source/Cluster.hpp'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/build/ExpressBetaDiversity.vcproj' -> `./build/ExpressBetaDiversity.vcproj'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/build/ExpressBetaDiversity.vcxproj.filters' -> `./build/ExpressBetaDiversity.vcxproj.filters'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/build/ExpressBetaDiversity.sln' -> `./build/ExpressBetaDiversity.sln'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/build/ExpressBetaDiversity.vcxproj' -> `./build/ExpressBetaDiversity.vcxproj'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/scripts/convertToEBD.py' -> `./scripts/convertToEBD.py'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/scripts/convertToFullMatrix.py' -> `./scripts/convertToFullMatrix.py'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/scripts/pcoaPlot.py' -> `./scripts/pcoaPlot.py'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/scripts/AbstractPlot.py' -> `./scripts/AbstractPlot.py'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/examples/test.diss' -> `./examples/test.diss'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/examples/test.tree' -> `./examples/test.tree'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/examples/test.tsv' -> `./examples/test.tsv'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/SimpleTree.tre' -> `./unit-tests/SimpleTree.tre'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/SharedSeqs.tre' -> `./unit-tests/SharedSeqs.tre'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/SharedSeqs.env' -> `./unit-tests/SharedSeqs.env'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/temp.diss' -> `./unit-tests/temp.diss'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/Multifurcating.env' -> `./unit-tests/Multifurcating.env'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/SimpleTree.env' -> `./unit-tests/SimpleTree.env'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/SimpleDataMatrix.env' -> `./unit-tests/SimpleDataMatrix.env'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/temp.tre' -> `./unit-tests/temp.tre'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/DataMatrixMothur.shared' -> `./unit-tests/DataMatrixMothur.shared'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/temp.txt.diss' -> `./unit-tests/temp.txt.diss'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/DataMatrixMothur.env' -> `./unit-tests/DataMatrixMothur.env'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/Multifurcating.tre' -> `./unit-tests/Multifurcating.tre'
`/gnu/store/jq95ncjry5i8mma9f1wf67jzsfwri8kx-express-beta-diversity-1.0.8-checkout/unit-tests/temp.txt.tre' -> `./unit-tests/temp.txt.tre'
phase `unpack' succeeded after 0.0 seconds
starting phase `bootstrap'
no 'configure.ac' or anything like that, doing nothing
phase `bootstrap' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./scripts/convertToEBD.py: changing `/usr/bin/env python' to `/gnu/store/j3n97d19k6ssqj6756di677sdl24fv63-python2-2.7.18/bin/python'
patch-shebang: ./scripts/convertToFullMatrix.py: changing `/usr/bin/env python' to `/gnu/store/j3n97d19k6ssqj6756di677sdl24fv63-python2-2.7.18/bin/python'
patch-shebang: ./source/dep.py: changing `/usr/bin/python' to `/gnu/store/j3n97d19k6ssqj6756di677sdl24fv63-python2-2.7.18/bin/python'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `enter-source'
phase `enter-source' succeeded after 0.0 seconds
starting phase `build'
=== creating directory: .build ===
=== creating dependency file: .build/ExpressBetaDiversity.d ===
g++ -O2 -fpermissive -MM -MT .build/ExpressBetaDiversity.o -MT .build/ExpressBetaDiversity.d -MF .build/ExpressBetaDiversity.d ExpressBetaDiversity.cpp
=== creating dependency file: .build/ExpressBetaDiversity.l ===
./dep.py "../bin/ExpressBetaDiversity" .build/ExpressBetaDiversity.l .build .build/ExpressBetaDiversity.d  > .build/ExpressBetaDiversity.l
=== creating dependency file: .build/SeqCountIO.d ===
=== creating dependency file: .build/DiversityCalculator.d ===
=== creating dependency file: .build/DataVectorizer.d ===
=== creating dependency file: .build/LinearRegression.d ===
=== creating dependency file: .build/Cluster.d ===
=== creating dependency file: .build/Precompiled.d ===
=== creating dependency file: .build/getopt_pp.d ===
=== creating dependency file: .build/UnitTests.d ===
=== creating dependency file: .build/Node.d ===
=== creating dependency file: .build/NewickIO.d ===
g++ -O2 -fpermissive -MM -MT .build/DiversityCalculator.o -MT .build/DiversityCalculator.d -MF .build/DiversityCalculator.d DiversityCalculator.cpp
g++ -O2 -fpermissive -MM -MT .build/SeqCountIO.o -MT .build/SeqCountIO.d -MF .build/SeqCountIO.d SeqCountIO.cpp
g++ -O2 -fpermissive -MM -MT .build/DataVectorizer.o -MT .build/DataVectorizer.d -MF .build/DataVectorizer.d DataVectorizer.cpp
g++ -O2 -fpermissive -MM -MT .build/LinearRegression.o -MT .build/LinearRegression.d -MF .build/LinearRegression.d LinearRegression.cpp
g++ -O2 -fpermissive -MM -MT .build/Precompiled.o -MT .build/Precompiled.d -MF .build/Precompiled.d Precompiled.cpp
g++ -O2 -fpermissive -MM -MT .build/Cluster.o -MT .build/Cluster.d -MF .build/Cluster.d Cluster.cpp
g++ -O2 -fpermissive -MM -MT .build/UnitTests.o -MT .build/UnitTests.d -MF .build/UnitTests.d UnitTests.cpp
g++ -O2 -fpermissive -MM -MT .build/getopt_pp.o -MT .build/getopt_pp.d -MF .build/getopt_pp.d getopt_pp.cpp
g++ -O2 -fpermissive -MM -MT .build/Node.o -MT .build/Node.d -MF .build/Node.d Node.cpp
g++ -O2 -fpermissive -MM -MT .build/NewickIO.o -MT .build/NewickIO.d -MF .build/NewickIO.d NewickIO.cpp
=== creating dependency file: .build/ExpressBetaDiversity.l ===
./dep.py "../bin/ExpressBetaDiversity" .build/ExpressBetaDiversity.l .build .build/ExpressBetaDiversity.d  > .build/ExpressBetaDiversity.l
=== creating dependency file: .build/StringTools.d ===
=== creating dependency file: .build/NeighbourJoining.d ===
g++ -O2 -fpermissive -MM -MT .build/StringTools.o -MT .build/StringTools.d -MF .build/StringTools.d StringTools.cpp
g++ -O2 -fpermissive -MM -MT .build/NeighbourJoining.o -MT .build/NeighbourJoining.d -MF .build/NeighbourJoining.d NeighbourJoining.cpp
=== creating dependency file: .build/ExpressBetaDiversity.l ===
./dep.py "../bin/ExpressBetaDiversity" .build/ExpressBetaDiversity.l .build .build/ExpressBetaDiversity.d  > .build/ExpressBetaDiversity.l
=== creating directory: ../bin ===
=== compiling: .build/NewickIO.o ===
=== compiling: .build/Node.o ===
=== compiling: .build/getopt_pp.o ===
=== compiling: .build/UnitTests.o ===
=== compiling: .build/ExpressBetaDiversity.o ===
=== compiling: .build/Cluster.o ===
=== compiling: .build/NeighbourJoining.o ===
=== compiling: .build/StringTools.o ===
=== compiling: .build/Precompiled.o ===
=== compiling: .build/LinearRegression.o ===
=== compiling: .build/DataVectorizer.o ===
=== compiling: .build/SeqCountIO.o ===
=== compiling: .build/DiversityCalculator.o ===
g++ -O2 -fpermissive -c -o .build/NewickIO.o NewickIO.cpp
g++ -O2 -fpermissive -c -o .build/Node.o Node.cpp
g++ -O2 -fpermissive -c -o .build/getopt_pp.o getopt_pp.cpp
g++ -O2 -fpermissive -c -o .build/UnitTests.o UnitTests.cpp
g++ -O2 -fpermissive -c -o .build/ExpressBetaDiversity.o ExpressBetaDiversity.cpp
g++ -O2 -fpermissive -c -o .build/Cluster.o Cluster.cpp
g++ -O2 -fpermissive -c -o .build/NeighbourJoining.o NeighbourJoining.cpp
g++ -O2 -fpermissive -c -o .build/StringTools.o StringTools.cpp
g++ -O2 -fpermissive -c -o .build/Precompiled.o Precompiled.cpp
g++ -O2 -fpermissive -c -o .build/LinearRegression.o LinearRegression.cpp
g++ -O2 -fpermissive -c -o .build/SeqCountIO.o SeqCountIO.cpp
g++ -O2 -fpermissive -c -o .build/DataVectorizer.o DataVectorizer.cpp
g++ -O2 -fpermissive -c -o .build/DiversityCalculator.o DiversityCalculator.cpp
=== linking: ../bin/ExpressBetaDiversity ===
g++ -Wall -o ../bin/ExpressBetaDiversity .build/NewickIO.o .build/Node.o .build/getopt_pp.o .build/UnitTests.o .build/ExpressBetaDiversity.o .build/Cluster.o .build/NeighbourJoining.o .build/StringTools.o .build/Precompiled.o .build/LinearRegression.o .build/DataVectorizer.o .build/SeqCountIO.o .build/DiversityCalculator.o 
=== done ===
phase `build' succeeded after 8.7 seconds
starting phase `check'

Passed all unit tests.
phase `check' succeeded after 0.0 seconds
starting phase `install'
phase `install' succeeded after 0.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/3gf3zrlxcw1x6ghhkmxh75q57y2mf0cv-express-beta-diversity-1.0.8/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/3gf3zrlxcw1x6ghhkmxh75q57y2mf0cv-express-beta-diversity-1.0.8/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
created '/gnu/store/3gf3zrlxcw1x6ghhkmxh75q57y2mf0cv-express-beta-diversity-1.0.8/etc/ld.so.cache' from 2 library search path entries
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
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starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds