starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin' environment variable `R_LIBS_SITE' set to `/gnu/store/sgkc3h839wijzlviiw425fxbjyq934hn-r-matrix-1.3-2/site-library/:/gnu/store/4q6p6087cg3n5i8i3ljncx11l6g5isc5-r-nlme-3.1-152/site-library/:/gnu/store/8gy419z0s3l4hbnkza4afpivp1434zmr-r-lattice-0.20-44/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' mgcv/ mgcv/NAMESPACE mgcv/GPL-2 mgcv/ChangeLog mgcv/data/ mgcv/data/columb.polys.rda mgcv/data/columb.rda mgcv/man/ mgcv/man/pdTens.Rd mgcv/man/mono.con.Rd mgcv/man/exclude.too.far.Rd mgcv/man/fixDependence.Rd mgcv/man/smooth.construct.ad.smooth.spec.Rd mgcv/man/Predict.matrix.soap.film.Rd mgcv/man/mini.roots.Rd mgcv/man/pcls.Rd mgcv/man/magic.post.proc.Rd mgcv/man/gam.fit3.Rd mgcv/man/smooth.construct.re.smooth.spec.Rd mgcv/man/place.knots.Rd mgcv/man/choose.k.Rd mgcv/man/extract.lme.cov.Rd mgcv/man/s.Rd mgcv/man/gam.selection.Rd mgcv/man/one.se.rule.Rd mgcv/man/gamObject.Rd mgcv/man/gam.fit.Rd mgcv/man/t2.Rd mgcv/man/fix.family.link.Rd mgcv/man/qq.gam.Rd mgcv/man/ziplss.Rd mgcv/man/family.mgcv.Rd mgcv/man/FFdes.Rd mgcv/man/inSide.Rd mgcv/man/vis.gam.Rd mgcv/man/Sl.setup.Rd mgcv/man/gam.reparam.Rd mgcv/man/smooth.construct.mrf.smooth.spec.Rd mgcv/man/random.effects.Rd mgcv/man/Predict.matrix.cr.smooth.Rd mgcv/man/smooth.construct.tensor.smooth.spec.Rd mgcv/man/bam.Rd mgcv/man/rmvn.Rd mgcv/man/smooth.construct.Rd mgcv/man/Predict.matrix.Rd mgcv/man/step.gam.Rd mgcv/man/gam.models.Rd mgcv/man/gam.Rd mgcv/man/formula.gam.Rd mgcv/man/predict.gam.Rd mgcv/man/jagam.Rd mgcv/man/notExp.Rd mgcv/man/smoothCon.Rd mgcv/man/sp.vcov.Rd mgcv/man/formXtViX.Rd mgcv/man/get.var.Rd mgcv/man/smooth.construct.tp.smooth.spec.Rd mgcv/man/smooth.construct.bs.smooth.spec.Rd mgcv/man/initial.sp.Rd mgcv/man/psum.chisq.Rd mgcv/man/coxpht.Rd mgcv/man/trichol.Rd mgcv/man/totalPenaltySpace.Rd mgcv/man/ls.size.Rd mgcv/man/bam.update.Rd mgcv/man/smooth.construct.ps.smooth.spec.Rd mgcv/man/rTweedie.Rd mgcv/man/influence.gam.Rd mgcv/man/gam.vcomp.Rd mgcv/man/gam.fit5.post.proc.Rd mgcv/man/smooth.construct.cr.smooth.spec.Rd mgcv/man/gaulss.Rd mgcv/man/gam.outer.Rd mgcv/man/gamlss.etamu.Rd mgcv/man/pdIdnot.Rd mgcv/man/predict.bam.Rd mgcv/man/tensor.prod.model.matrix.Rd mgcv/man/interpret.gam.Rd mgcv/man/gam.check.Rd mgcv/man/cSplineDes.Rd mgcv/man/ginla.Rd mgcv/man/gamlss.gH.Rd mgcv/man/smooth.construct.so.smooth.spec.Rd mgcv/man/full.score.Rd mgcv/man/gam2objective.Rd mgcv/man/logLik.gam.Rd mgcv/man/summary.gam.Rd mgcv/man/rig.Rd mgcv/man/gam.control.Rd mgcv/man/coxph.Rd mgcv/man/magic.Rd mgcv/man/mgcv-package.Rd mgcv/man/trind.generator.Rd mgcv/man/columb.Rd mgcv/man/smooth.info.Rd mgcv/man/print.gam.Rd mgcv/man/anova.gam.Rd mgcv/man/ldTweedie.Rd mgcv/man/negbin.Rd mgcv/man/mroot.Rd mgcv/man/gam.mh.Rd mgcv/man/blas.thread.test.Rd mgcv/man/dDeta.Rd mgcv/man/Beta.Rd mgcv/man/Tweedie.Rd mgcv/man/shash.Rd mgcv/man/pen.edf.Rd mgcv/man/plot.gam.Rd mgcv/man/gevlss.Rd mgcv/man/mgcv-parallel.Rd mgcv/man/missing.data.Rd mgcv/man/mgcv-FAQ.Rd mgcv/man/smooth.construct.t2.smooth.spec.Rd mgcv/man/Sl.initial.repara.Rd mgcv/man/smooth.construct.fs.smooth.spec.Rd mgcv/man/mvn.Rd mgcv/man/notExp2.Rd mgcv/man/linear.functional.terms.Rd mgcv/man/gamm.Rd mgcv/man/Sl.repara.Rd mgcv/man/gam.convergence.Rd mgcv/man/sdiag.Rd mgcv/man/ldetS.Rd mgcv/man/polys.plot.Rd mgcv/man/gam.scale.Rd mgcv/man/k.check.Rd mgcv/man/bandchol.Rd mgcv/man/single.index.Rd mgcv/man/smooth.construct.gp.smooth.spec.Rd mgcv/man/ocat.Rd mgcv/man/smooth.construct.sos.smooth.spec.Rd mgcv/man/fs.test.Rd mgcv/man/new.name.Rd mgcv/man/smooth.construct.ds.smooth.spec.Rd mgcv/man/uniquecombs.Rd mgcv/man/in.out.Rd mgcv/man/smooth2random.Rd mgcv/man/slanczos.Rd mgcv/man/smooth.terms.Rd mgcv/man/vcov.gam.Rd mgcv/man/gumbls.Rd mgcv/man/chol.down.Rd mgcv/man/XWXd.Rd mgcv/man/Rrank.Rd mgcv/man/gammals.Rd mgcv/man/te.Rd mgcv/man/identifiability.Rd mgcv/man/scat.Rd mgcv/man/spasm.construct.Rd mgcv/man/gamSim.Rd mgcv/man/twlss.Rd mgcv/man/residuals.gam.Rd mgcv/man/concurvity.Rd mgcv/man/model.matrix.gam.Rd mgcv/man/gam.side.Rd mgcv/man/ziP.Rd mgcv/man/bug.reports.mgcv.Rd mgcv/man/multinom.Rd mgcv/man/null.space.dimension.Rd mgcv/DESCRIPTION mgcv/build/ mgcv/build/partial.rdb mgcv/tests/ mgcv/tests/coxpht.R mgcv/tests/single.index.R mgcv/tests/bam.R mgcv/tests/gam.R mgcv/tests/mgcv-parallel.R mgcv/tests/smooth.construct.so.smooth.spec.R mgcv/tests/missing.data.R mgcv/src/ mgcv/src/davies.c mgcv/src/tprs.h mgcv/src/mgcv.h mgcv/src/matrix.h mgcv/src/magic.c mgcv/src/coxph.c mgcv/src/mgcv.c mgcv/src/qp.c mgcv/src/gdi.c mgcv/src/init.c mgcv/src/sparse.c mgcv/src/mat.c mgcv/src/sparse-smooth.c mgcv/src/soap.c mgcv/src/Makevars mgcv/src/tprs.c mgcv/src/matrix.c mgcv/src/mvn.c mgcv/src/qp.h mgcv/src/general.h mgcv/src/misc.c mgcv/src/discrete.c mgcv/R/ mgcv/R/misc.r mgcv/R/coxph.r mgcv/R/fast-REML.r mgcv/R/efam.r mgcv/R/soap.r mgcv/R/mgcv.r mgcv/R/mvam.r mgcv/R/gam.sim.r mgcv/R/inla.r mgcv/R/gamm.r mgcv/R/smooth.r mgcv/R/gam.fit4.r mgcv/R/gam.fit3.r mgcv/R/bam.r mgcv/R/jagam.r mgcv/R/plots.r mgcv/R/gamlss.r mgcv/R/mcmc.r mgcv/R/sparse.r mgcv/MD5 mgcv/inst/ mgcv/inst/CITATION mgcv/inst/po/ mgcv/inst/po/ko/ mgcv/inst/po/ko/LC_MESSAGES/ mgcv/inst/po/ko/LC_MESSAGES/R-mgcv.mo mgcv/inst/po/ko/LC_MESSAGES/mgcv.mo mgcv/inst/po/fr/ mgcv/inst/po/fr/LC_MESSAGES/ mgcv/inst/po/fr/LC_MESSAGES/R-mgcv.mo mgcv/inst/po/fr/LC_MESSAGES/mgcv.mo mgcv/inst/po/it/ mgcv/inst/po/it/LC_MESSAGES/ mgcv/inst/po/it/LC_MESSAGES/R-mgcv.mo mgcv/inst/po/it/LC_MESSAGES/mgcv.mo mgcv/inst/po/de/ mgcv/inst/po/de/LC_MESSAGES/ mgcv/inst/po/de/LC_MESSAGES/R-mgcv.mo mgcv/inst/po/de/LC_MESSAGES/mgcv.mo mgcv/inst/po/pl/ mgcv/inst/po/pl/LC_MESSAGES/ mgcv/inst/po/pl/LC_MESSAGES/R-mgcv.mo mgcv/inst/po/pl/LC_MESSAGES/mgcv.mo mgcv/inst/po/en@quot/ mgcv/inst/po/en@quot/LC_MESSAGES/ mgcv/inst/po/en@quot/LC_MESSAGES/R-mgcv.mo mgcv/inst/po/en@quot/LC_MESSAGES/mgcv.mo mgcv/po/ mgcv/po/en@quot.po mgcv/po/mgcv.pot mgcv/po/R-en@quot.po mgcv/po/R-ko.po mgcv/po/pl.po mgcv/po/it.po mgcv/po/ko.po mgcv/po/R-pl.po mgcv/po/R-de.po mgcv/po/R-mgcv.pot mgcv/po/R-it.po mgcv/po/R-fr.po mgcv/po/de.po mgcv/po/fr.po phase `unpack' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘mgcv’ ... ** package ‘mgcv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c coxph.c -o coxph.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c davies.c -o davies.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c discrete.c -o discrete.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c gdi.c -o gdi.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c init.c -o init.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c magic.c -o magic.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mat.c -o mat.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c matrix.c -o matrix.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mgcv.c -o mgcv.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c misc.c -o misc.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mvn.c -o mvn.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c qp.c -o qp.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c soap.c -o soap.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c sparse-smooth.c -o sparse-smooth.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c sparse.c -o sparse.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c tprs.c -o tprs.o gcc -shared -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -lRlapack -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -lRblas -L/gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0 -L/gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib -lgfortran -lm -lquadmath -fopenmp -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -lR installing to /gnu/store/daxbrd0wl7xxdfp3z1wwv362j2584bk1-r-mgcv-1.8-35/site-library/00LOCK-mgcv/00new/mgcv/libs ** R ** data ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mgcv) phase `install' succeeded after 93.0 seconds starting phase `check' Testing examples for package ‘mgcv’ phase `check' succeeded after 40.7 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 0 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds