starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/bin:/gnu/store/99c25918hl9pihix8hparmc96q6zrpwy-tar-1.34/bin:/gnu/store/l0yga4lrwwf74rz7fb0dadglg27ajpsx-gzip-1.10/bin:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/bin:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/bin:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/bin:/gnu/store/h0rx6y95zin61fp5wlyjly4g9j2hma18-diffutils-3.8/bin:/gnu/store/7j8j7m0kgb7kv2fc18qvrdj7gs3jc4mx-patch-2.7.6/bin:/gnu/store/x4yglk9pn2s2ixl1b4lj151bd2yvlgww-findutils-4.8.0/bin:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/bin:/gnu/store/cnwr7widbi6470kfyb13krx46kz5anmy-sed-4.8/bin:/gnu/store/bx47clwnxn51m7jdwfimz4lw2fh8g21v-grep-3.6/bin:/gnu/store/9a0cjh929maqvkxn3inv6jqbxn72fkx0-coreutils-8.32/bin:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/bin:/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin:/gnu/store/4bzvr16pyax9224v9r72rqxswj9931sb-ld-wrapper-0/bin:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/bin:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/8q9dsp5fbcl0vwi4f231s7bz89p2h844-r-knitr-1.39/site-library/:/gnu/store/gncaf9nlzjp7z6j7rjnhmpi3id7f3d2z-r-yaml-2.3.5/site-library/:/gnu/store/yhb7aqvv6q7niskk8abkfm6c49l2jwzd-r-xfun-0.31/site-library/:/gnu/store/iyp7hrr5188mrdhahs3irq3i74zlyndn-r-stringr-1.4.0/site-library/:/gnu/store/ig10kl87xzcjhzw3kv2w4ychf42yp19c-r-highr-0.9/site-library/:/gnu/store/ds1cffn0c2xgihll60bqr1kgnnd61ixy-r-evaluate-0.15/site-library/:/gnu/store/kdy7lp6f2v7jzg1w6mp9rcn1n8azfg7g-r-stringi-1.7.6/site-library/:/gnu/store/wg7w9ix2cjgsx2c5skx8pij7mjifi4w8-r-magrittr-2.0.3/site-library/:/gnu/store/1n4f86cwnddvq0dmcqp9y6ak1mdk9wf1-r-glue-1.6.2/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include/c++:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/lib:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/lib:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/lib:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/lib:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/lib:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/lib:/gnu/store/1s4k8h3h1ka9za4yzg0dfjnlhab5k14p-glibc-2.33-static/lib:/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
bit/
bit/NAMESPACE
bit/man/
bit/man/quicksort3.Rd
bit/man/range_sortna.Rd
bit/man/as.bitwhich.Rd
bit/man/chunk.Rd
bit/man/str.bitwhich.Rd
bit/man/bit_unidup.Rd
bit/man/bit.Rd
bit/man/bit_sort_unique.Rd
bit/man/vecseq.Rd
bit/man/ri.Rd
bit/man/still.identical.Rd
bit/man/rev.booltype.Rd
bit/man/Extract.Rd
bit/man/as.booltype.Rd
bit/man/Summaries.Rd
bit/man/symdiff.Rd
bit/man/countsort.Rd
bit/man/reverse_vector.Rd
bit/man/length.bit.Rd
bit/man/Metadata.Rd
bit/man/as.character.bitwhich.Rd
bit/man/bitwhich_representation.Rd
bit/man/print.bitwhich.Rd
bit/man/bit_init.Rd
bit/man/Sorting.Rd
bit/man/CoercionToStandard.Rd
bit/man/is.na.bit.Rd
bit/man/bit_setops.Rd
bit/man/clone.Rd
bit/man/quicksort2.Rd
bit/man/chunks.Rd
bit/man/as.bit.Rd
bit/man/firstNA.Rd
bit/man/bitsort.Rd
bit/man/repfromto.Rd
bit/man/bit_sort.Rd
bit/man/bit_in.Rd
bit/man/in.bitwhich.Rd
bit/man/as.ri.Rd
bit/man/as.which.Rd
bit/man/copy_vector.Rd
bit/man/print.bit.Rd
bit/man/bbatch.Rd
bit/man/maxindex.Rd
bit/man/merge_rev.Rd
bit/man/get_length.Rd
bit/man/repeat.time.Rd
bit/man/bit-package.Rd
bit/man/range_na.Rd
bit/man/unattr.Rd
bit/man/bitwhich.Rd
bit/man/booltypes.Rd
bit/man/range_nanozero.Rd
bit/man/rlepack.Rd
bit/man/c.booltype.Rd
bit/man/intrle.Rd
bit/man/booltype.Rd
bit/man/rep.booltype.Rd
bit/man/str.bit.Rd
bit/man/getsetattr.Rd
bit/man/bit_rangediff.Rd
bit/man/is.booltype.Rd
bit/man/as.character.bit.Rd
bit/man/xor.Rd
bit/man/PhysVirt.Rd
bit/DESCRIPTION
bit/build/
bit/build/vignette.rds
bit/tests/
bit/tests/testthat/
bit/tests/testthat/test-old-regtest.R
bit/tests/testthat/test-bit.R
bit/tests/testthat/test-merge.R
bit/tests/testthat/test-rle.R
bit/tests/testthat/test-bitsort.R
bit/tests/testthat.R
bit/src/
bit/src/sort.c
bit/src/merge.h
bit/src/merge.c.h
bit/src/attrutil.c
bit/src/sort.h
bit/src/rle.c
bit/src/init.c
bit/src/chunkutil.c
bit/src/integerutil.c
bit/src/Makevars
bit/src/bit.c
bit/src/range.c.h
bit/src/merge.c
bit/src/clone.c
bit/vignettes/
bit/vignettes/bit-usage.Rmd
bit/vignettes/bit-demo.Rmd
bit/vignettes/bit-performance.Rmd
bit/NEWS
bit/R/
bit/R/zzz.R
bit/R/attrutil.R
bit/R/generics.R
bit/R/bit-package.R
bit/R/rle.R
bit/R/clone.R
bit/R/bitsort.R
bit/R/bit.R
bit/R/timeutil.R
bit/R/integerutil.R
bit/R/merge.R
bit/R/chunkutil.R
bit/MD5
bit/inst/
bit/inst/doc/
bit/inst/doc/bit-performance.html
bit/inst/doc/bit-usage.html
bit/inst/doc/bit-demo.R
bit/inst/doc/bit-usage.R
bit/inst/doc/bit-usage.Rmd
bit/inst/doc/bit-performance.R
bit/inst/doc/bit-demo.html
bit/inst/doc/bit-demo.Rmd
bit/inst/doc/bit-performance.Rmd
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
Warning message:
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Warning message:
In normalizePath("~") :
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* installing *source* package ‘bit’ ...
** package ‘bit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c attrutil.c -o attrutil.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c bit.c -o bit.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c chunkutil.c -o chunkutil.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c clone.c -o clone.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c integerutil.c -o integerutil.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c merge.c -o merge.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rle.c -o rle.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c sort.c -o sort.o
gcc -shared -L/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/lib -L/usr/local/lib -o bit.so attrutil.o bit.o chunkutil.o clone.o init.o integerutil.o merge.o rle.o sort.o -L/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/lib -lR
installing to /gnu/store/nj2cl0zi0mb5xnz7rc51hzzdqz50npqz-r-bit-4.0.4/site-library/00LOCK-bit/00new/bit/libs
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
Warning message:
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  path[1]="/homeless-shelter": No such file or directory
Warning message:
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  path[1]="/homeless-shelter": No such file or directory
** help
*** installing help indices
** building package indices
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
** testing if installed package keeps a record of temporary installation path
* DONE (bit)
phase `install' succeeded after 27.1 seconds
starting phase `check'
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Testing examples for package ‘bit’
Running specific tests for package ‘bit’
  Running ‘testthat.R’
phase `check' succeeded after 5.5 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds