starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin:/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/bin:/gnu/store/3lx5rw6aazp1cskcbmhd3mb842zanj88-tar-1.32/bin:/gnu/store/43y9wjllnr1sczwlfi0vxh27zp28zixh-gzip-1.10/bin:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/bin:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/bin:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/bin:/gnu/store/hn05v0h7qiqdq59avr247a3wd8kpsvg0-diffutils-3.7/bin:/gnu/store/4s297bh5gg8dixd9n6xkw2z73cxd1v91-patch-2.7.6/bin:/gnu/store/9gawha19xlpkz9qk6z9lcgfxfq5bj27a-findutils-4.7.0/bin:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/bin:/gnu/store/bqcvgh7q4316fynb9wg6akvlk9ikdjj5-sed-4.8/bin:/gnu/store/iqxcm511fivbrlik4i7ly3dxn53qm689-grep-3.4/bin:/gnu/store/x5z9z2d06w4yj4kq18i4b5q2yxg0w9dh-coreutils-8.32/bin:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/bin:/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin:/gnu/store/2nygnpi7zns33k9k1dr3y0md5kg8b876-ld-wrapper-0/bin:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/bin:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/bin:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/bin:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/sbin' environment variable `PERL5LIB' set to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/lib/perl5/site_perl' environment variable `PYTHONPATH' set to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/lib/python3.8/site-packages' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/include:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/include:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/include:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/include:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/include:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/include:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/include:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/include:/gnu/store/sg9ks2n9ikj4952zmf2g851g206zb0r9-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/include:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/include:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/include:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/include:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/include:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/include:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/include:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include/c++:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/include:/gnu/store/sg9ks2n9ikj4952zmf2g851g206zb0r9-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/lib:/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/lib:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/lib:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/lib:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/lib:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/lib:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/lib:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/lib:/gnu/store/q5xs9789fyb5rnnr1nvq3zjd8biif14y-glibc-2.31-static/lib:/gnu/store/aybfkaw4fasp8hk1hzk3npmi952g11a3-glibc-utf8-locales-2.31/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/aybfkaw4fasp8hk1hzk3npmi952g11a3-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' hmmer-3.3.2/ hmmer-3.3.2/documentation/ 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hmmer-3.3.2/documentation/man/hmmstat.man.in hmmer-3.3.2/documentation/man/hmmc2.man.in hmmer-3.3.2/documentation/man/hmmpgmd_shard.man.in hmmer-3.3.2/documentation/man/alimask.man.in hmmer-3.3.2/documentation/man/hmmpress.man.in hmmer-3.3.2/documentation/man/hmmfetch.man.in hmmer-3.3.2/documentation/man/nhmmer.man.in hmmer-3.3.2/documentation/man/hmmsearch.man.in hmmer-3.3.2/documentation/man/hmmer.man.in hmmer-3.3.2/documentation/man/hmmsim.man.in hmmer-3.3.2/documentation/man/hmmlogo.man.in hmmer-3.3.2/documentation/man/jackhmmer.man.in hmmer-3.3.2/documentation/man/hmmbuild.man.in hmmer-3.3.2/documentation/man/hmmemit.man.in hmmer-3.3.2/documentation/man/Makefile.in hmmer-3.3.2/documentation/man/hmmscan.man.in phase `unpack' succeeded after 0.8 seconds starting phase `bootstrap' GNU build system bootstrapping not needed phase `bootstrap' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.3 seconds starting phase `patch-source-shebangs' patch-shebang: ./config.guess: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./config.sub: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./configure: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./documentation/userguide/inclusions/gen-inclusions.py: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./easel/config.guess: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./easel/config.sub: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./easel/demotic/blast2profmark: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/demotic/blast2tbl: changing `/usr/bin/perl' to 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`/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./easel/makeTAGS.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./easel/miniapps/esl-afetch.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-alimanip.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-alimap.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-alimask.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-alimerge.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-alistat.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-compalign.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-construct.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-mask.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-seqrange.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-shuffle.itest.py: changing `/usr/bin/env python3' to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/bin/python3' patch-shebang: ./easel/miniapps/esl-ssdraw.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/miniapps/esl-translate.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/testsuite/coverage_report.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/testsuite/e2.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./easel/testsuite/i1-degen-residues.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/testsuite/i2-ncbi-indices.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/testsuite/i3-blank-gf.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./easel/testsuite/parse_test_results.py: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./easel/testsuite/valgrind_report.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./install-sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./makeTAGS.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./profmark/pmark-master.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/rocplot.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-fps-fasta: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-fps-ncbiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-fps-ncbiblast+: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-fps-phmmer: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-fps-ssearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-fps-wublast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-h2-fs: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-h2-ls: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-hmmsearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-hmmsearch-max: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-iterate-jackhmmer: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-iterate-psiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-phmmer-consensus: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-psiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-psiblast+: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-sam: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-single-ncbiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-single-phmmer: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./profmark/x-single-ssearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./src/hmmpgmd_client_example.pl: changing `/usr/bin/env perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./src/hmmpress.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/component-benchmark.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/speed-master.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/speedA-list.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-fasta: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-hmmer2: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-hmmsearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-ncbiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-ncbiblast+: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-psiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-psiblast+: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-sam: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-ssearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./test-speed/x-wublast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/h3.pm: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i1-build-variation.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./testsuite/i10-duplicate-names.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i11-hmmalign-mapali.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i12-delete-corruption.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i13-msa-integrity.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i14-hmmemit-consensus.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i15-hmmconvert.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i16-build-allins.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i17-stdin.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i18-nhmmer-generic.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i19-hmmpgmd-ga.pl: changing `/usr/bin/env perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i2-search-variation.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./testsuite/i20-fmindex-core.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i21-rewind.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i22-hmmpgmd-shard-ga.pl: changing `/usr/bin/env perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i23-bad-fasta.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./testsuite/i3-seqsearch-variation.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./testsuite/i4-zerolength-seqs.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./testsuite/i5-hmmbuild-naming.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i6-hmmalign-mapali.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i7-hmmbuild-fragments.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i8-nonresidues.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/i9-optional-annotation.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl' patch-shebang: ./testsuite/iss159-nhmmer-overlap.py: changing `/usr/bin/env python3' to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/bin/python3' patch-shebang: ./testsuite/parse_test_results.py: warning: no binary for interpreter `python' found in $PATH phase `patch-source-shebangs' succeeded after 0.4 seconds starting phase `configure' source directory: "/tmp/guix-build-hmmer-3.3.2.drv-0/hmmer-3.3.2" (relative from build: ".") build directory: "/tmp/guix-build-hmmer-3.3.2.drv-0/hmmer-3.3.2" configure flags: ("CONFIG_SHELL=/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "SHELL=/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "--prefix=/gnu/store/30slndc1zyha3v6phn8s5az05jf1cr0f-hmmer-3.3.2" "--enable-fast-install" "--build=powerpc64le-unknown-linux-gnu") configure: WARNING: unrecognized options: --enable-fast-install configure: Configuring HMMER3 for your system. checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /gnu/store/x5z9z2d06w4yj4kq18i4b5q2yxg0w9dh-coreutils-8.32/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /gnu/store/bqcvgh7q4316fynb9wg6akvlk9ikdjj5-sed-4.8/bin/sed checking for grep that handles long lines and -e... /gnu/store/iqxcm511fivbrlik4i7ly3dxn53qm689-grep-3.4/bin/grep checking for egrep... /gnu/store/iqxcm511fivbrlik4i7ly3dxn53qm689-grep-3.4/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our Altivec/VMX code... yes checking whether gcc can compile our SSE code... no configure: Activating Altivec/VMX vector DP implementation checking compiler support --start-group... yes checking for gzip... /gnu/store/43y9wjllnr1sczwlfi0vxh27zp28zixh-gzip-1.10/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking altivec.h usability... yes checking altivec.h presence... yes checking for altivec.h... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no configure: ::::::::::--- no vector instruction set ---:::::::::: configure: HMMER3 Altivec/VMX only supports bigendian platforms: e.g. ppc64 not ppc64le configure: error: No supported vectorization found for your machine. command "/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "./configure" "CONFIG_SHELL=/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "SHELL=/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "--prefix=/gnu/store/30slndc1zyha3v6phn8s5az05jf1cr0f-hmmer-3.3.2" "--enable-fast-install" "--build=powerpc64le-unknown-linux-gnu" failed with status 1