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hmmer-3.3.2/
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hmmer-3.3.2/libdivsufsort/AUTHORS
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hmmer-3.3.2/libdivsufsort/divsufsort.c
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patch-shebang: ./easel/devkit/rmanprocess.py: changing `/usr/bin/env python3' to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/bin/python3'
patch-shebang: ./easel/devkit/sedition: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/devkit/sedition-pp: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/devkit/sqc: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/devkit/techtree.py: changing `/usr/bin/env python3' to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/bin/python3'
patch-shebang: ./easel/install-sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./easel/makeTAGS.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./easel/miniapps/esl-afetch.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/miniapps/esl-alimanip.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/miniapps/esl-alimap.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/miniapps/esl-alimask.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
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patch-shebang: ./easel/miniapps/esl-compalign.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/miniapps/esl-construct.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/miniapps/esl-mask.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/miniapps/esl-seqrange.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/miniapps/esl-shuffle.itest.py: changing `/usr/bin/env python3' to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/bin/python3'
patch-shebang: ./easel/miniapps/esl-ssdraw.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
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patch-shebang: ./easel/testsuite/coverage_report.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/testsuite/e2.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./easel/testsuite/i1-degen-residues.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./easel/testsuite/i2-ncbi-indices.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
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patch-shebang: ./easel/testsuite/parse_test_results.py: warning: no binary for interpreter `python' found in $PATH
patch-shebang: ./easel/testsuite/valgrind_report.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./install-sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./makeTAGS.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./profmark/pmark-master.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/rocplot.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-fps-fasta: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-fps-ncbiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-fps-ncbiblast+: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-fps-phmmer: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-fps-ssearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-fps-wublast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-h2-fs: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-h2-ls: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-hmmsearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-hmmsearch-max: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-iterate-jackhmmer: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-iterate-psiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-phmmer-consensus: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-psiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-psiblast+: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-sam: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-single-ncbiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-single-phmmer: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./profmark/x-single-ssearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./src/hmmpgmd_client_example.pl: changing `/usr/bin/env perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./src/hmmpress.itest.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/component-benchmark.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/speed-master.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/speedA-list.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-fasta: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-hmmer2: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-hmmsearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-ncbiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-ncbiblast+: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-psiblast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-psiblast+: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-sam: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-ssearch: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./test-speed/x-wublast: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/h3.pm: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i1-build-variation.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./testsuite/i10-duplicate-names.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i11-hmmalign-mapali.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i12-delete-corruption.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i13-msa-integrity.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i14-hmmemit-consensus.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i15-hmmconvert.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i16-build-allins.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i17-stdin.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i18-nhmmer-generic.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i19-hmmpgmd-ga.pl: changing `/usr/bin/env perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i2-search-variation.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./testsuite/i20-fmindex-core.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i21-rewind.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i22-hmmpgmd-shard-ga.pl: changing `/usr/bin/env perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i23-bad-fasta.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./testsuite/i3-seqsearch-variation.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./testsuite/i4-zerolength-seqs.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./testsuite/i5-hmmbuild-naming.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i6-hmmalign-mapali.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i7-hmmbuild-fragments.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i8-nonresidues.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/i9-optional-annotation.pl: changing `/usr/bin/perl' to `/gnu/store/0y1y6n6md89vc9f30wgf1x5af3gzf3hp-perl-5.30.2/bin/perl'
patch-shebang: ./testsuite/iss159-nhmmer-overlap.py: changing `/usr/bin/env python3' to `/gnu/store/mdmcq71hqxv0n972yw0izzxxqhzpvfxh-python-3.8.2/bin/python3'
patch-shebang: ./testsuite/parse_test_results.py: warning: no binary for interpreter `python' found in $PATH
phase `patch-source-shebangs' succeeded after 0.4 seconds
starting phase `configure'
source directory: "/tmp/guix-build-hmmer-3.3.2.drv-0/hmmer-3.3.2" (relative from build: ".")
build directory: "/tmp/guix-build-hmmer-3.3.2.drv-0/hmmer-3.3.2"
configure flags: ("CONFIG_SHELL=/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "SHELL=/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "--prefix=/gnu/store/30slndc1zyha3v6phn8s5az05jf1cr0f-hmmer-3.3.2" "--enable-fast-install" "--build=powerpc64le-unknown-linux-gnu")
configure: WARNING: unrecognized options: --enable-fast-install
configure: Configuring HMMER3 for your system.
checking build system type... powerpc64le-unknown-linux-gnu
checking host system type... powerpc64le-unknown-linux-gnu
checking whether to compile using MPI... no
checking for gcc... gcc
checking whether the C compiler works... yes
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checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
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checking for gcc option to accept ISO Standard C... (cached) none needed
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /gnu/store/x5z9z2d06w4yj4kq18i4b5q2yxg0w9dh-coreutils-8.32/bin/install -c
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checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking whether gcc can compile our Altivec/VMX code... yes
checking whether gcc can compile our SSE code... no
configure: Activating Altivec/VMX vector DP implementation
checking compiler support --start-group... yes
checking for gzip... /gnu/store/43y9wjllnr1sczwlfi0vxh27zp28zixh-gzip-1.10/bin/gzip
checking for python3... yes
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checking for off_t... yes
checking whether byte ordering is bigendian... no
configure: ::::::::::--- no vector instruction set ---::::::::::
configure: HMMER3 Altivec/VMX only supports bigendian platforms: e.g. ppc64 not ppc64le
configure: error: No supported vectorization found for your machine.
command "/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "./configure" "CONFIG_SHELL=/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "SHELL=/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/bash" "--prefix=/gnu/store/30slndc1zyha3v6phn8s5az05jf1cr0f-hmmer-3.3.2" "--enable-fast-install" "--build=powerpc64le-unknown-linux-gnu" failed with status 1