starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/kngd1h8b65kdnawd9mfxarwhkaxwq0lz-autoconf-2.69/bin:/gnu/store/i4c6yd0n7yhw2qi5217z62zb9n023dk7-automake-1.16.5/bin:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/bin:/gnu/store/lkmwq399jllig2a5r323v6y9nflpn6gn-binutils-cross-i586-pc-gnu-2.38/bin:/gnu/store/sxx22f98vfbavcqmdksm6as8fvskpxiw-tar-1.34/bin:/gnu/store/x24bm49ag5dvki72mjdz195bfb89nrnb-gzip-1.12/bin:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/bin:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/bin:/gnu/store/zmcf5kpqiighkbh7wslf91qdjwj06yr1-diffutils-3.8/bin:/gnu/store/210yfax18r2g2inxrml9435ikhfcca6m-patch-2.7.6/bin:/gnu/store/c8jyph2lxw0m9na34fg8h70n4nnnz7is-findutils-4.9.0/bin:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/bin:/gnu/store/xxcfsimvxz7z4dj593gnqbkzc6picwzq-sed-4.8/bin:/gnu/store/yrv5f70mn83a876b78i5s79dd2hsh0zf-grep-3.8/bin:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/bin:/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin:/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin:/gnu/store/na1dpbbcxjaa3n8wkwrfpch476f90hlf-ld-wrapper-0/bin:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/bin:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/bin:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/sbin'
environment variable `CROSS_LIBRARY_PATH' set to `/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib'
environment variable `CROSS_C_INCLUDE_PATH' set to `/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/include:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/include:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/include:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/include'
environment variable `CROSS_CPLUS_INCLUDE_PATH' set to `/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/include:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/include:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/include:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/include'
environment variable `CROSS_OBJC_INCLUDE_PATH' set to `/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/include:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/include:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/include:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/include'
environment variable `CROSS_OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/include:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/include:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/include:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/include'
environment variable `ACLOCAL_PATH' set to `/gnu/store/i4c6yd0n7yhw2qi5217z62zb9n023dk7-automake-1.16.5/share/aclocal'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include:/gnu/store/lkmwq399jllig2a5r323v6y9nflpn6gn-binutils-cross-i586-pc-gnu-2.38/include:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/include:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/include:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/include:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/include:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/include:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/include:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/include:/gnu/store/5iklcps70c0sfkxvlrhg8jhf3q4h18bj-linux-libre-headers-5.15.49/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include:/gnu/store/lkmwq399jllig2a5r323v6y9nflpn6gn-binutils-cross-i586-pc-gnu-2.38/include:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/include:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/include:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/include:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/include:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/include:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/include:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/include:/gnu/store/5iklcps70c0sfkxvlrhg8jhf3q4h18bj-linux-libre-headers-5.15.49/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/lkmwq399jllig2a5r323v6y9nflpn6gn-binutils-cross-i586-pc-gnu-2.38/lib:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/lib:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/lib:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/lib:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/lib:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/lib:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib:/gnu/store/l0yryi5jsa1grnvw01c9nkz9c81cv224-glibc-2.35-static/lib:/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales-2.35/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales-2.35/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/.clang-format' -> `./.clang-format'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/AUTHORS' -> `./AUTHORS'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/ChangeLog' -> `./ChangeLog'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/Dockerfile' -> `./Dockerfile'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/Doxyfile' -> `./Doxyfile'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/Makefile.am' -> `./Makefile.am'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/NEWS' -> `./NEWS'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/README' -> `./README'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/README.md' -> `./README.md'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/autogen.sh' -> `./autogen.sh'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/call_variants.sh' -> `./call_variants.sh'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/config.h.in' -> `./config.h.in'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/configure.ac' -> `./configure.ac'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/Makefile.am' -> `./tests/Makefile.am'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/check_quality_trim.cpp' -> `./tests/check_quality_trim.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_allele_depth.cpp' -> `./tests/test_allele_depth.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_amplicon_search.cpp' -> `./tests/test_amplicon_search.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_call_consensus_from_plup.cpp' -> `./tests/test_call_consensus_from_plup.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_common_variants.cpp' -> `./tests/test_common_variants.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_consensus_min_depth.cpp' -> `./tests/test_consensus_min_depth.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_consensus_min_insert_threshold.cpp' -> `./tests/test_consensus_min_insert_threshold.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_consensus_seq_id.cpp' -> `./tests/test_consensus_seq_id.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_consensus_threshold.cpp' -> `./tests/test_consensus_threshold.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_getmasked.cpp' -> `./tests/test_getmasked.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_interval_tree.cpp' -> `./tests/test_interval_tree.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_isize_trim.cpp' -> `./tests/test_isize_trim.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_primer_bed.cpp' -> `./tests/test_primer_bed.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_primer_trim.cpp' -> `./tests/test_primer_trim.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_primer_trim_edge_cases.cpp' -> `./tests/test_primer_trim_edge_cases.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_primer_trim_pairs.cpp' -> `./tests/test_primer_trim_pairs.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_ref_seq.cpp' -> `./tests/test_ref_seq.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_removereads.cpp' -> `./tests/test_removereads.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_trim.cpp' -> `./tests/test_trim.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_unpaired_trim.cpp' -> `./tests/test_unpaired_trim.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/tests/test_variants.cpp' -> `./tests/test_variants.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/Makefile.am' -> `./src/Makefile.am'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/alignment.cpp' -> `./src/alignment.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/alignment.h' -> `./src/alignment.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/allele_functions.cpp' -> `./src/allele_functions.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/allele_functions.h' -> `./src/allele_functions.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/bam_to_bed.cpp' -> `./src/bam_to_bed.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/call_consensus.cpp' -> `./src/call_consensus.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/call_consensus_pileup.cpp' -> `./src/call_consensus_pileup.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/call_consensus_pileup.h' -> `./src/call_consensus_pileup.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/call_variants.cpp' -> `./src/call_variants.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/call_variants.h' -> `./src/call_variants.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/get_common_variants.cpp' -> `./src/get_common_variants.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/get_common_variants.h' -> `./src/get_common_variants.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/get_masked_amplicons.cpp' -> `./src/get_masked_amplicons.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/get_masked_amplicons.h' -> `./src/get_masked_amplicons.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/interval_tree.cpp' -> `./src/interval_tree.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/interval_tree.h' -> `./src/interval_tree.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/ivar.cpp' -> `./src/ivar.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/parse_gff.cpp' -> `./src/parse_gff.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/parse_gff.h' -> `./src/parse_gff.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/primer_bed.cpp' -> `./src/primer_bed.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/primer_bed.h' -> `./src/primer_bed.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/ref_seq.cpp' -> `./src/ref_seq.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/ref_seq.h' -> `./src/ref_seq.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/remove_reads_from_amplicon.cpp' -> `./src/remove_reads_from_amplicon.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/remove_reads_from_amplicon.h' -> `./src/remove_reads_from_amplicon.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/suffix_tree.cpp' -> `./src/suffix_tree.cpp'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/suffix_tree.h' -> `./src/suffix_tree.h'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/src/trim_primer_quality.cpp' -> `./src/trim_primer_quality.cpp'
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`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/pipeline_consensus/Snakefile' -> `./pipeline_consensus/Snakefile'
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`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/latex/md__r_e_a_d_m_e.tex' -> `./docs/latex/md__r_e_a_d_m_e.tex'
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`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/_readme_8md_source.html' -> `./docs/html/_readme_8md_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/alignment_8cpp_source.html' -> `./docs/html/alignment_8cpp_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/alignment_8h_source.html' -> `./docs/html/alignment_8h_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/allele__functions_8cpp_source.html' -> `./docs/html/allele__functions_8cpp_source.html'
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`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/bam__to__bed_8cpp_source.html' -> `./docs/html/bam__to__bed_8cpp_source.html'
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`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/call__consensus_8cpp_source.html' -> `./docs/html/call__consensus_8cpp_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/call__consensus__pileup_8cpp_source.html' -> `./docs/html/call__consensus__pileup_8cpp_source.html'
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`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/call__variants_8cpp_source.html' -> `./docs/html/call__variants_8cpp_source.html'
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`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/globals.html' -> `./docs/html/globals.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/globals_func.html' -> `./docs/html/globals_func.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/graph_legend.dot' -> `./docs/html/graph_legend.dot'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/graph_legend.html' -> `./docs/html/graph_legend.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/graph_legend.md5' -> `./docs/html/graph_legend.md5'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/index.html' -> `./docs/html/index.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/installpage.html' -> `./docs/html/installpage.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/ivar_8cpp.html' -> `./docs/html/ivar_8cpp.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/ivar_8cpp__incl.dot' -> `./docs/html/ivar_8cpp__incl.dot'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/ivar_8cpp__incl.md5' -> `./docs/html/ivar_8cpp__incl.md5'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/ivar_8cpp_source.html' -> `./docs/html/ivar_8cpp_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/jquery.js' -> `./docs/html/jquery.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/manualpage.html' -> `./docs/html/manualpage.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/md__r_e_a_d_m_e.html' -> `./docs/html/md__r_e_a_d_m_e.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/md_docs__r_e_a_d_m_e.html' -> `./docs/html/md_docs__r_e_a_d_m_e.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/menu.js' -> `./docs/html/menu.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/menudata.js' -> `./docs/html/menudata.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/nav_f.png' -> `./docs/html/nav_f.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/nav_fd.png' -> `./docs/html/nav_fd.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/nav_g.png' -> `./docs/html/nav_g.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/nav_h.png' -> `./docs/html/nav_h.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/nav_hd.png' -> `./docs/html/nav_hd.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/open.png' -> `./docs/html/open.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/pages.html' -> `./docs/html/pages.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/primer__bed_8cpp_source.html' -> `./docs/html/primer__bed_8cpp_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/primer__bed_8h_source.html' -> `./docs/html/primer__bed_8h_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/remove__reads__from__amplicon_8cpp_source.html' -> `./docs/html/remove__reads__from__amplicon_8cpp_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/remove__reads__from__amplicon_8h_source.html' -> `./docs/html/remove__reads__from__amplicon_8h_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/splitbar.png' -> `./docs/html/splitbar.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/splitbard.png' -> `./docs/html/splitbard.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structallele-members.html' -> `./docs/html/structallele-members.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structallele.html' -> `./docs/html/structallele.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structargs__t-members.html' -> `./docs/html/structargs__t-members.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structargs__t.html' -> `./docs/html/structargs__t.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structcigar__-members.html' -> `./docs/html/structcigar__-members.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structcigar__.html' -> `./docs/html/structcigar__.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structmaj-members.html' -> `./docs/html/structmaj-members.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structmaj.html' -> `./docs/html/structmaj.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structret__t-members.html' -> `./docs/html/structret__t-members.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/structret__t.html' -> `./docs/html/structret__t.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/suffix__tree_8cpp_source.html' -> `./docs/html/suffix__tree_8cpp_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/suffix__tree_8h_source.html' -> `./docs/html/suffix__tree_8h_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/sync_off.png' -> `./docs/html/sync_off.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/sync_on.png' -> `./docs/html/sync_on.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tab_a.png' -> `./docs/html/tab_a.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tab_ad.png' -> `./docs/html/tab_ad.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tab_b.png' -> `./docs/html/tab_b.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tab_bd.png' -> `./docs/html/tab_bd.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tab_h.png' -> `./docs/html/tab_h.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tab_hd.png' -> `./docs/html/tab_hd.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tab_s.png' -> `./docs/html/tab_s.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tab_sd.png' -> `./docs/html/tab_sd.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/tabs.css' -> `./docs/html/tabs.css'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/test_8cpp_source.html' -> `./docs/html/test_8cpp_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/trim__primer__quality_8cpp_source.html' -> `./docs/html/trim__primer__quality_8cpp_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/trim__primer__quality_8h_source.html' -> `./docs/html/trim__primer__quality_8h_source.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_0.html' -> `./docs/html/search/all_0.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_0.js' -> `./docs/html/search/all_0.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_1.html' -> `./docs/html/search/all_1.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_1.js' -> `./docs/html/search/all_1.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_2.html' -> `./docs/html/search/all_2.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_2.js' -> `./docs/html/search/all_2.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_3.html' -> `./docs/html/search/all_3.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_3.js' -> `./docs/html/search/all_3.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_4.html' -> `./docs/html/search/all_4.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_4.js' -> `./docs/html/search/all_4.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_5.html' -> `./docs/html/search/all_5.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_5.js' -> `./docs/html/search/all_5.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_6.html' -> `./docs/html/search/all_6.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_6.js' -> `./docs/html/search/all_6.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_7.html' -> `./docs/html/search/all_7.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/all_7.js' -> `./docs/html/search/all_7.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_0.html' -> `./docs/html/search/classes_0.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_0.js' -> `./docs/html/search/classes_0.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_1.html' -> `./docs/html/search/classes_1.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_1.js' -> `./docs/html/search/classes_1.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_2.html' -> `./docs/html/search/classes_2.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_2.js' -> `./docs/html/search/classes_2.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_3.html' -> `./docs/html/search/classes_3.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_3.js' -> `./docs/html/search/classes_3.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_4.html' -> `./docs/html/search/classes_4.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_4.js' -> `./docs/html/search/classes_4.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_5.html' -> `./docs/html/search/classes_5.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/classes_5.js' -> `./docs/html/search/classes_5.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/close.png' -> `./docs/html/search/close.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/close.svg' -> `./docs/html/search/close.svg'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/files_0.html' -> `./docs/html/search/files_0.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/files_0.js' -> `./docs/html/search/files_0.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/functions_0.html' -> `./docs/html/search/functions_0.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/functions_0.js' -> `./docs/html/search/functions_0.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/mag.svg' -> `./docs/html/search/mag.svg'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/mag_d.svg' -> `./docs/html/search/mag_d.svg'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/mag_sel.png' -> `./docs/html/search/mag_sel.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/mag_sel.svg' -> `./docs/html/search/mag_sel.svg'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/mag_seld.svg' -> `./docs/html/search/mag_seld.svg'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/nomatches.html' -> `./docs/html/search/nomatches.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/pages_0.html' -> `./docs/html/search/pages_0.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/pages_0.js' -> `./docs/html/search/pages_0.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/pages_1.html' -> `./docs/html/search/pages_1.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/pages_1.js' -> `./docs/html/search/pages_1.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/pages_2.html' -> `./docs/html/search/pages_2.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/pages_2.js' -> `./docs/html/search/pages_2.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/pages_3.html' -> `./docs/html/search/pages_3.html'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/pages_3.js' -> `./docs/html/search/pages_3.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/search.css' -> `./docs/html/search/search.css'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/search.js' -> `./docs/html/search/search.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/search_l.png' -> `./docs/html/search/search_l.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/search_m.png' -> `./docs/html/search/search_m.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/search_r.png' -> `./docs/html/search/search_r.png'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/docs/html/search/searchdata.js' -> `./docs/html/search/searchdata.js'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/pair_info_2.tsv' -> `./data/pair_info_2.tsv'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/pair_information.tsv' -> `./data/pair_information.tsv'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.bed' -> `./data/test.bed'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.filtered.tsv' -> `./data/test.filtered.tsv'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.gap.sorted.bam' -> `./data/test.gap.sorted.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.gap.sorted.bam.bai' -> `./data/test.gap.sorted.bam.bai'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.gap.sorted.mpileup' -> `./data/test.gap.sorted.mpileup'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.gff' -> `./data/test.gff'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.indel.mpileup' -> `./data/test.indel.mpileup'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.sim.merged.sorted.bam' -> `./data/test.sim.merged.sorted.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.sim.merged.sorted.bam.bai' -> `./data/test.sim.merged.sorted.bam.bai'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.sorted.bam' -> `./data/test.sorted.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.sorted.bam.bai' -> `./data/test.sorted.bam.bai'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.trimmed.sorted.bam' -> `./data/test.trimmed.sorted.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test.unmapped.sorted.bam' -> `./data/test.unmapped.sorted.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test_amplicon.sorted.bam' -> `./data/test_amplicon.sorted.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test_isize.bed' -> `./data/test_isize.bed'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test_isize.sorted.bam' -> `./data/test_isize.sorted.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/test_merged.bed' -> `./data/test_merged.bed'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/primer_pair_test/test_primer_pair.bed' -> `./data/primer_pair_test/test_primer_pair.bed'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/primer_pair_test/test_primer_pair_trim.tsv' -> `./data/primer_pair_test/test_primer_pair_trim.tsv'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/primer_pair_test/test_primer_pair_trim.untrimmed.bam' -> `./data/primer_pair_test/test_primer_pair_trim.untrimmed.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/primer_only/primer_edge_cases.bam' -> `./data/primer_only/primer_edge_cases.bam'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/primer_only/primer_edge_cases.bam.bai' -> `./data/primer_only/primer_edge_cases.bam.bai'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/data/db/test_ref.fa' -> `./data/db/test_ref.fa'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/.github/workflows/ccpp.yml' -> `./.github/workflows/ccpp.yml'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/.github/workflows/clang-format-check.yml' -> `./.github/workflows/clang-format-check.yml'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/.github/ISSUE_TEMPLATE/bug_report.md' -> `./.github/ISSUE_TEMPLATE/bug_report.md'
`/gnu/store/8c9bxlsg6kcawvf7v0bghv14aw1j0n7b-ivar-1.4.2-checkout/.github/ISSUE_TEMPLATE/feature_request.md' -> `./.github/ISSUE_TEMPLATE/feature_request.md'
phase `unpack' succeeded after 3.9 seconds
starting phase `patch-CXXFLAGS'
phase `patch-CXXFLAGS' succeeded after 0.0 seconds
starting phase `bootstrap'
running './autogen.sh'
patch-shebang: ./autogen.sh: changing `/bin/bash' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/bash'
configure.ac:12: installing './compile'
configure.ac:6: installing './install-sh'
configure.ac:6: installing './missing'
src/Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
phase `bootstrap' succeeded after 5.4 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.1 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./call_variants.sh: changing `/bin/bash' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./compile: changing `/bin/sh' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh'
patch-shebang: ./configure: changing `/bin/sh' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh'
patch-shebang: ./depcomp: changing `/bin/sh' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh'
patch-shebang: ./install-sh: changing `/bin/sh' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh'
patch-shebang: ./missing: changing `/bin/sh' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh'
patch-shebang: ./scripts/get_common_variants.sh: changing `/bin/bash' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./scripts/primer_bam_to_bed.sh: changing `/bin/bash' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./test-driver: changing `/bin/sh' to `/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh'
phase `patch-source-shebangs' succeeded after 0.2 seconds
starting phase `configure'
source directory: "/tmp/guix-build-ivar-1.4.2.drv-0/source" (relative from build: ".")
build directory: "/tmp/guix-build-ivar-1.4.2.drv-0/source"
configure flags: ("CC_FOR_BUILD=gcc" "CONFIG_SHELL=/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/bash" "SHELL=/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/bash" "--prefix=/gnu/store/1hwlkblnpxc3rnk3jmk6kybj4ddg5g56-ivar-1.4.2" "--enable-fast-install" "--build=x86_64-unknown-linux-gnu" "--host=i586-pc-gnu")
configure: WARNING: unrecognized options: --enable-fast-install
checking for a BSD-compatible install... /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/install -c
checking whether build environment is sane... yes
checking for i586-pc-gnu-strip... i586-pc-gnu-strip
checking for a thread-safe mkdir -p... /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... no
checking whether make supports nested variables... yes
checking for gawk... (cached) gawk
checking for i586-pc-gnu-g++... i586-pc-gnu-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i586-pc-gnu-g++ accepts -g... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of i586-pc-gnu-g++... gcc3
checking for i586-pc-gnu-gcc... i586-pc-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether i586-pc-gnu-gcc accepts -g... yes
checking for i586-pc-gnu-gcc option to accept ISO C89... none needed
checking whether i586-pc-gnu-gcc understands -c and -o together... yes
checking dependency style of i586-pc-gnu-gcc... gcc3
checking how to run the C preprocessor... i586-pc-gnu-gcc -E
checking for main in -lhts... no
checking for main in -lpthread... no
checking for main in -lz... no
checking for grep that handles long lines and -e... /gnu/store/yrv5f70mn83a876b78i5s79dd2hsh0zf-grep-3.8/bin/grep
checking for egrep... /gnu/store/yrv5f70mn83a876b78i5s79dd2hsh0zf-grep-3.8/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for inline... inline
checking for int16_t... yes
checking for int32_t... yes
checking for int8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint8_t... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... no
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... no
checking for memmove... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --enable-fast-install
phase `configure' succeeded after 4.4 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.1 seconds
starting phase `build'
make  all-recursive
make[1]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source'
Making all in src
make[2]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/src'
depbase=`echo ivar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT ivar.o -MD -MP -MF $depbase.Tpo -c -o ivar.o ivar.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo call_consensus_pileup.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT call_consensus_pileup.o -MD -MP -MF $depbase.Tpo -c -o call_consensus_pileup.o call_consensus_pileup.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo alignment.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT alignment.o -MD -MP -MF $depbase.Tpo -c -o alignment.o alignment.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo suffix_tree.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT suffix_tree.o -MD -MP -MF $depbase.Tpo -c -o suffix_tree.o suffix_tree.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo trim_primer_quality.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT trim_primer_quality.o -MD -MP -MF $depbase.Tpo -c -o trim_primer_quality.o trim_primer_quality.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo remove_reads_from_amplicon.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT remove_reads_from_amplicon.o -MD -MP -MF $depbase.Tpo -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo call_variants.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT call_variants.o -MD -MP -MF $depbase.Tpo -c -o call_variants.o call_variants.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo primer_bed.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT primer_bed.o -MD -MP -MF $depbase.Tpo -c -o primer_bed.o primer_bed.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo allele_functions.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT allele_functions.o -MD -MP -MF $depbase.Tpo -c -o allele_functions.o allele_functions.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo get_masked_amplicons.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT get_masked_amplicons.o -MD -MP -MF $depbase.Tpo -c -o get_masked_amplicons.o get_masked_amplicons.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo get_common_variants.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT get_common_variants.o -MD -MP -MF $depbase.Tpo -c -o get_common_variants.o get_common_variants.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo parse_gff.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT parse_gff.o -MD -MP -MF $depbase.Tpo -c -o parse_gff.o parse_gff.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo ref_seq.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT ref_seq.o -MD -MP -MF $depbase.Tpo -c -o ref_seq.o ref_seq.cpp &&\
mv -f $depbase.Tpo $depbase.Po
depbase=`echo interval_tree.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
i586-pc-gnu-g++ -DHAVE_CONFIG_H -I. -I..     -v -g -std=c++11 -Wall -Wextra  -MT interval_tree.o -MD -MP -MF $depbase.Tpo -c -o interval_tree.o interval_tree.cpp &&\
mv -f $depbase.Tpo $depbase.Po
Using built-in specs.
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'call_consensus_pileup.o' '-MD' '-MP' '-MF' '.deps/call_consensus_pileup.Tpo' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD call_consensus_pileup.d -MF .deps/call_consensus_pileup.Tpo -MP -MT call_consensus_pileup.o -D_GNU_SOURCE -D HAVE_CONFIG_H call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccmgjJTX.s
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'alignment.o' '-MD' '-MP' '-MF' '.deps/alignment.Tpo' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD alignment.d -MF .deps/alignment.Tpo -MP -MT alignment.o -D_GNU_SOURCE -D HAVE_CONFIG_H alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccOy4i4Z.s
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Using built-in specs.
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'ivar.o' '-MD' '-MP' '-MF' '.deps/ivar.Tpo' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plusConfigured with: 
 -quiet -vThread model: posix
 -I .Supported LTO compression algorithms: zlib -I
 .. -MDgcc version 11.3.0 (GCC) 
 ivar.d -MF .deps/ivar.Tpo -MP -MT ivar.o -D_GNU_SOURCE -D HAVE_CONFIG_H ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccxjuzoN.s
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'trim_primer_quality.o' '-MD' '-MP' '-MF' '.deps/trim_primer_quality.Tpo' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD trim_primer_quality.d -MF .deps/trim_primer_quality.Tpo -MP -MT trim_primer_quality.o -D_GNU_SOURCE -D HAVE_CONFIG_H trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccHv6gkp.s
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
Using built-in specs.
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'remove_reads_from_amplicon.o' '-MD' '-MP' '-MF' '.deps/remove_reads_from_amplicon.Tpo' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD remove_reads_from_amplicon.d -MF .deps/remove_reads_from_amplicon.Tpo -MP -MT remove_reads_from_amplicon.o -D_GNU_SOURCE -D HAVE_CONFIG_H remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/cc1YAAMD.s
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'call_variants.o' '-MD' '-MP' '-MF' '.deps/call_variants.Tpo' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD call_variants.d -MF .deps/call_variants.Tpo -MP -MT call_variants.o -D_GNU_SOURCE -D HAVE_CONFIG_H call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccxqEOKp.s
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
Using built-in specs.
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'suffix_tree.o' '-MD' '-MP' '-MF' '.deps/suffix_tree.Tpo' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD suffix_tree.d -MF .deps/suffix_tree.Tpo -MP -MT suffix_tree.o -D_GNU_SOURCE -D HAVE_CONFIG_H suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccIKJH7n.s
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
Using built-in specs.
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'primer_bed.o' '-MD' '-MP' '-MF' '.deps/primer_bed.Tpo' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plusSupported LTO compression algorithms: zlib
 -quietgcc version 11.3.0 (GCC) 
 -v -I . -I .. -MD primer_bed.d -MF .deps/primer_bed.Tpo -MP -MT primer_bed.o -D_GNU_SOURCE -D HAVE_CONFIG_H primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/cc2hJH1Q.s
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'get_common_variants.o' '-MD' '-MP' '-MF' '.deps/get_common_variants.Tpo' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD get_common_variants.d -MF .deps/get_common_variants.Tpo -MP -MT get_common_variants.o -D_GNU_SOURCE -D HAVE_CONFIG_H get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccX9rEEP.s
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'allele_functions.o' '-MD' '-MP' '-MF' '.deps/allele_functions.Tpo' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD allele_functions.d -MF .deps/allele_functions.Tpo -MP -MT allele_functions.o -D_GNU_SOURCE -D HAVE_CONFIG_H allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccI4Kwn5.s
Using built-in specs.
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'interval_tree.o' '-MD' '-MP' '-MF' '.deps/interval_tree.Tpo' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD interval_tree.d -MF .deps/interval_tree.Tpo -MP -MT interval_tree.o -D_GNU_SOURCE -D HAVE_CONFIG_H interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccNMZTuw.s
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'parse_gff.o' '-MD' '-MP' '-MF' '.deps/parse_gff.Tpo' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD parse_gff.d -MF .deps/parse_gff.Tpo -MP -MT parse_gff.o -D_GNU_SOURCE -D HAVE_CONFIG_H parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccPmBHHZ.s
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'get_masked_amplicons.o' '-MD' '-MP' '-MF' '.deps/get_masked_amplicons.Tpo' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD get_masked_amplicons.d -MF .deps/get_masked_amplicons.Tpo -MP -MT get_masked_amplicons.o -D_GNU_SOURCE -D HAVE_CONFIG_H get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/cckDXpIc.s
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'ref_seq.o' '-MD' '-MP' '-MF' '.deps/ref_seq.Tpo' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/cc1plus -quiet -v -I . -I .. -MD ref_seq.d -MF .deps/ref_seq.Tpo -MP -MT ref_seq.o -D_GNU_SOURCE -D HAVE_CONFIG_H ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=pentium -march=pentium -g -Wall -Wextra -std=c++11 -version -o /tmp/guix-build-ivar-1.4.2.drv-0/ccBGizCh.s
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
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ignoring nonexistent directory "/no-gcc-local-prefix/include"
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ignoring duplicate directory "/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include"
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#include "..." search starts here:
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#include <...> search starts here:
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GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
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	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++"
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 .
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End of search list.
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++"
ignoring nonexistent directory "/no-gcc-local-prefix/include"
ignoring nonexistent directory "/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../../../../i586-pc-gnu/include"
ignoring duplicate directory "/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include"
#include "..." search starts here:
#include <...> search starts here:
 .
 ..
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End of search list.
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++"
ignoring nonexistent directory "/no-gcc-local-prefix/include"
ignoring nonexistent directory "/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../../../../i586-pc-gnu/include"
ignoring duplicate directory "/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include"
#include "..." search starts here:
#include <...> search starts here:
 .
 ..
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End of search list.
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++"
ignoring nonexistent directory "/no-gcc-local-prefix/include"
ignoring duplicate directory "/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++"
ignoring nonexistent directory "/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../../../../i586-pc-gnu/include"
ignoring duplicate directory "/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include"
#include "..." search starts here:
#include <...> search starts here:
 .
 ..
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ignoring nonexistent directory "/no-gcc-local-prefix/include"
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End of search list.
ignoring nonexistent directory "/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../../../../i586-pc-gnu/include"
ignoring duplicate directory "/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include"
#include "..." search starts here:
#include <...> search starts here:
 .
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End of search list.
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++"
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

ignoring nonexistent directory "/no-gcc-local-prefix/include"
ignoring nonexistent directory "/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../../../../i586-pc-gnu/include"
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include"
#include "..." search starts here:
#include <...> search starts here:
 .
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End of search list.
ignoring duplicate directory "/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++"
ignoring nonexistent directory "/no-gcc-local-prefix/include"
ignoring nonexistent directory "/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../../../../i586-pc-gnu/include"
ignoring duplicate directory "/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include"
#include "..." search starts here:
#include <...> search starts here:
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End of search list.
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
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GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/include/c++"
ignoring nonexistent directory "/no-gcc-local-prefix/include"
ignoring nonexistent directory "/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../../../../i586-pc-gnu/include"
ignoring duplicate directory "/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/include"
#include "..." search starts here:
#include <...> search starts here:
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GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
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GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
	compiled by GNU C version 11.3.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.24-GMP

Compiler executable checksum: a5GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
2606GNU C++11 (GCC) version 11.3.0 (i586-pc-gnu)
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9179
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Compiler executable checksum: a52606Compiler executable checksum: 9179f5df9754a5fa26e206918d79f5addfef975469d4fae2
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Compiler executable checksum: a526069179f5df9754fae28dadef69d4
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Compiler executable checksum: a526069179f5df9754fae28dadef69d4
Compiler executable checksum: a526069179f5df9754fae28dadef69d4
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COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'get_masked_amplicons.o' '-MD' '-MP' '-MF' '.deps/get_masked_amplicons.Tpo' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'get_masked_amplicons.'
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'primer_bed.o' '-MD' '-MP' '-MF' '.deps/primer_bed.Tpo' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/as -v -I . -I .. --gdwarf-5 --32 -o primer_bed.o /tmp/guix-build-ivar-1.4.2.drv-0/cc2hJH1Q.s
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'suffix_tree.o' '-MD' '-MP' '-MF' '.deps/suffix_tree.Tpo' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'suffix_tree.'
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'primer_bed.o' '-MD' '-MP' '-MF' '.deps/primer_bed.Tpo' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'primer_bed.'
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'get_common_variants.o' '-MD' '-MP' '-MF' '.deps/get_common_variants.Tpo' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/as -v -I . -I .. --gdwarf-5 --32 -o get_common_variants.o /tmp/guix-build-ivar-1.4.2.drv-0/ccX9rEEP.s
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'get_common_variants.o' '-MD' '-MP' '-MF' '.deps/get_common_variants.Tpo' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'get_common_variants.'
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'trim_primer_quality.o' '-MD' '-MP' '-MF' '.deps/trim_primer_quality.Tpo' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/as -v -I . -I .. --gdwarf-5 --32 -o trim_primer_quality.o /tmp/guix-build-ivar-1.4.2.drv-0/ccHv6gkp.s
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'trim_primer_quality.o' '-MD' '-MP' '-MF' '.deps/trim_primer_quality.Tpo' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'trim_primer_quality.'
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'ref_seq.o' '-MD' '-MP' '-MF' '.deps/ref_seq.Tpo' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/as -v -I . -I .. --gdwarf-5 --32 -o ref_seq.o /tmp/guix-build-ivar-1.4.2.drv-0/ccBGizCh.s
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'ref_seq.o' '-MD' '-MP' '-MF' '.deps/ref_seq.Tpo' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'ref_seq.'
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'call_consensus_pileup.o' '-MD' '-MP' '-MF' '.deps/call_consensus_pileup.Tpo' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/as -v -I . -I .. --gdwarf-5 --32 -o call_consensus_pileup.o /tmp/guix-build-ivar-1.4.2.drv-0/ccmgjJTX.s
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'call_variants.o' '-MD' '-MP' '-MF' '.deps/call_variants.Tpo' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/as -v -I . -I .. --gdwarf-5 --32 -o call_variants.o /tmp/guix-build-ivar-1.4.2.drv-0/ccxqEOKp.s
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'call_consensus_pileup.o' '-MD' '-MP' '-MF' '.deps/call_consensus_pileup.Tpo' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'call_consensus_pileup.'
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'call_variants.o' '-MD' '-MP' '-MF' '.deps/call_variants.Tpo' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'call_variants.'
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'ivar.o' '-MD' '-MP' '-MF' '.deps/ivar.Tpo' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/as -v -I . -I .. --gdwarf-5 --32 -o ivar.o /tmp/guix-build-ivar-1.4.2.drv-0/ccxjuzoN.s
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'ivar.o' '-MD' '-MP' '-MF' '.deps/ivar.Tpo' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'ivar.'
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'parse_gff.o' '-MD' '-MP' '-MF' '.deps/parse_gff.Tpo' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/as -v -I . -I .. --gdwarf-5 --32 -o parse_gff.o /tmp/guix-build-ivar-1.4.2.drv-0/ccPmBHHZ.s
GNU assembler version 2.38 (i586-pc-gnu) using BFD version (GNU Binutils) 2.38
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-MT' 'parse_gff.o' '-MD' '-MP' '-MF' '.deps/parse_gff.Tpo' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'parse_gff.'
i586-pc-gnu-g++  -v -g -std=c++11 -Wall -Wextra    -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread
Using built-in specs.
COLLECT_GCC=i586-pc-gnu-g++
COLLECT_LTO_WRAPPER=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/lto-wrapper
Target: i586-pc-gnu
Configured with: 
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 11.3.0 (GCC) 
COMPILER_PATH=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/:/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/
CROSS_LIBRARY_PATH=/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib/:/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib/:/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/:/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib/:/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/:/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib/:/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib
COLLECT_GCC_OPTIONS='-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-o' 'ivar' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'ivar.'
 /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/collect2 -plugin /gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/liblto_plugin.so -plugin-opt=/gnu/store/6x11dvn4b8sw4bilz0r7sm4hvn7b8ymz-gcc-cross-i586-pc-gnu-11.3.0/libexec/gcc/i586-pc-gnu/11.3.0/lto-wrapper -plugin-opt=-fresolution=/tmp/guix-build-ivar-1.4.2.drv-0/ccSxCV8G.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --eh-frame-hdr -m elf_i386 -dynamic-linker /gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/ld.so.1 -o ivar /gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/crt1.o /gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/crti.o /gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/crtbegin.o -L/gnu/store/6n45l10nyszbbbyq998zrmsdilznhw3x-htslib-1.16/lib -L/gnu/store/m58j66ppvscp96fziizw0l8aqwki1qfn-zlib-1.2.13/lib -L/gnu/store/xbmgfhi2v75p96kf6y0mb5m3fvvzjspl-htscodecs-1.5.1/lib -L/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib -L/gnu/store/d4mrx4gfw5vssqz7xbbfwcp4gshrc36a-glibc-cross-i586-pc-gnu-2.37-static/lib -L/gnu/store/icwq4jqn1knn8yigs1xd4g74bl4ca84g-hurd-core-headers-cross-i586-pc-gnu-v0.9.git20230216/lib -L/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0 -L/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/../../../../i586-pc-gnu/lib -L/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -L/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib -rpath=/gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib -rpath=/gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/i586-pc-gnu/lib -lgcc_s -lc -lgcc_s -lgcc /gnu/store/z01wr0b47pifwn7q5q3rgaqfbjs96kmm-gcc-cross-i586-pc-gnu-11.3.0-lib/lib/gcc/i586-pc-gnu/11.3.0/crtend.o /gnu/store/2jiy31xj3dcwj90i7smwi5y7yd2k2s00-glibc-cross-i586-pc-gnu-2.37/lib/crtn.o
COLLECT_GCC_OPTIONS='-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-o' 'ivar' '-shared-libgcc' '-mtune=pentium' '-march=pentium' '-dumpdir' 'ivar.'
make[2]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/src'
Making all in tests
make[2]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/tests'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/tests'
make[2]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source'
make[2]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source'
make[1]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source'
phase `build' succeeded after 8.8 seconds
starting phase `check'
test suite not run
phase `check' succeeded after 0.0 seconds
starting phase `install'
Making install in src
make[1]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/src'
make[2]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/src'
 /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p '/gnu/store/1hwlkblnpxc3rnk3jmk6kybj4ddg5g56-ivar-1.4.2/bin'
  /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/install -c ivar '/gnu/store/1hwlkblnpxc3rnk3jmk6kybj4ddg5g56-ivar-1.4.2/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/src'
make[1]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/src'
Making install in tests
make[1]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/tests'
make[2]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/tests'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/tests'
make[1]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source/tests'
make[1]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source'
make[2]: Entering directory '/tmp/guix-build-ivar-1.4.2.drv-0/source'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source'
make[1]: Leaving directory '/tmp/guix-build-ivar-1.4.2.drv-0/source'
phase `install' succeeded after 0.3 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.2 seconds
starting phase `strip'
stripping binaries in "/gnu/store/1hwlkblnpxc3rnk3jmk6kybj4ddg5g56-ivar-1.4.2/bin" with "i586-pc-gnu-strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/1hwlkblnpxc3rnk3jmk6kybj4ddg5g56-ivar-1.4.2/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
ld.so cache not built
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds