starting phase `separate-from-pid1' build process now running as PID 18 phase `separate-from-pid1' succeeded after 0.0 seconds starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/jm1ydcb81ihi9b55nkbq50wcj8wfkb7y-automake-1.16.5/bin:/gnu/store/88b96xxjl2p446yjmdcavds3kss976jr-autoconf-2.69/bin:/gnu/store/pn8c3l5l395bd79128bb01isgkxr892v-gsl-2.8/bin:/gnu/store/i474jgjaikpj15ypklc8rzx8hkcxpzp0-openmpi-4.1.6/bin:/gnu/store/xf9q2qibn5vb6cy6jb3ifkrh4wql7vxy-tar-1.34/bin:/gnu/store/5g3pia8fi48qvaqhb0xqw1j5yrxfkpbm-gzip-1.13/bin:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/bin:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/bin:/gnu/store/l1vf4qc0b70pzxqgz72sm4rj7b5fa1w0-diffutils-3.10/bin:/gnu/store/ihhhssc16ii48rds45i7v356l7p721ri-patch-2.7.6/bin:/gnu/store/w7isjvmf0qcs290vjwb7p3rjyfx0dn4s-findutils-4.9.0/bin:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/bin:/gnu/store/y8khv5c0z35xd5wh3lga1npkrg4n53wm-zstd-1.5.2/bin:/gnu/store/8mapjfzb13assv6nd4kph3csvqydk6ym-sed-4.8/bin:/gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/bin:/gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/bin:/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin:/gnu/store/cfzwm4yq78c39iqxlr146jr2lk1rl09c-ld-wrapper-0/bin:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/bin:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/sbin' environment variable `ACLOCAL_PATH' set to `/gnu/store/jm1ydcb81ihi9b55nkbq50wcj8wfkb7y-automake-1.16.5/share/aclocal:/gnu/store/pn8c3l5l395bd79128bb01isgkxr892v-gsl-2.8/share/aclocal' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/pn8c3l5l395bd79128bb01isgkxr892v-gsl-2.8/include:/gnu/store/i474jgjaikpj15ypklc8rzx8hkcxpzp0-openmpi-4.1.6/include:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/pn8c3l5l395bd79128bb01isgkxr892v-gsl-2.8/include:/gnu/store/i474jgjaikpj15ypklc8rzx8hkcxpzp0-openmpi-4.1.6/include:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/pn8c3l5l395bd79128bb01isgkxr892v-gsl-2.8/include:/gnu/store/i474jgjaikpj15ypklc8rzx8hkcxpzp0-openmpi-4.1.6/include:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/pn8c3l5l395bd79128bb01isgkxr892v-gsl-2.8/include:/gnu/store/i474jgjaikpj15ypklc8rzx8hkcxpzp0-openmpi-4.1.6/include:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/pn8c3l5l395bd79128bb01isgkxr892v-gsl-2.8/lib:/gnu/store/i474jgjaikpj15ypklc8rzx8hkcxpzp0-openmpi-4.1.6/lib:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/lib:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/lib:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/lib:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/lib:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/lib:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib:/gnu/store/s21dvcsxf4ynf9jsip352z568knxb5hp-glibc-2.39-static/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib/locale' environment variable `TZDIR' unset phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'C.UTF-8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' rscape_v2.0.0.q/ rscape_v2.0.0.q/documentation/ rscape_v2.0.0.q/install-sh rscape_v2.0.0.q/configure.ac rscape_v2.0.0.q/tutorial/ rscape_v2.0.0.q/INSTALL rscape_v2.0.0.q/LICENSE rscape_v2.0.0.q/bin/ rscape_v2.0.0.q/configure rscape_v2.0.0.q/python/ rscape_v2.0.0.q/autom4te.cache/ rscape_v2.0.0.q/config.guess rscape_v2.0.0.q/README.md rscape_v2.0.0.q/config.sub rscape_v2.0.0.q/logo/ rscape_v2.0.0.q/scripts/ rscape_v2.0.0.q/lib/ rscape_v2.0.0.q/data/ rscape_v2.0.0.q/Makefile.in rscape_v2.0.0.q/aclocal.m4 rscape_v2.0.0.q/share/ rscape_v2.0.0.q/src/ rscape_v2.0.0.q/src/contactmap.h rscape_v2.0.0.q/src/miscellaneous.c rscape_v2.0.0.q/src/power.h rscape_v2.0.0.q/src/maxcov.c rscape_v2.0.0.q/src/ratebuilder.h rscape_v2.0.0.q/src/plot.h rscape_v2.0.0.q/src/e2_profilesq.c rscape_v2.0.0.q/src/correlators.h rscape_v2.0.0.q/src/logsum.h rscape_v2.0.0.q/src/ribosum.c rscape_v2.0.0.q/src/structure.h rscape_v2.0.0.q/src/e1_rate.c rscape_v2.0.0.q/src/covariation.c rscape_v2.0.0.q/src/allbranchmsa.c rscape_v2.0.0.q/src/appcov.c rscape_v2.0.0.q/src/ribosum_matrix.h rscape_v2.0.0.q/src/msamanip.h rscape_v2.0.0.q/src/e1_emit.c rscape_v2.0.0.q/src/msatree.h rscape_v2.0.0.q/src/cococyk.h rscape_v2.0.0.q/src/e2.h rscape_v2.0.0.q/src/e1_bg.h rscape_v2.0.0.q/src/cacofold.c rscape_v2.0.0.q/src/minimize.h rscape_v2.0.0.q/src/cacofold.h.bck rscape_v2.0.0.q/src/e1_simulate.h rscape_v2.0.0.q/src/R-scape.c rscape_v2.0.0.q/src/R-scape-sim-nobps.c rscape_v2.0.0.q/src/cov_simulate.h rscape_v2.0.0.q/src/covgrammars.h rscape_v2.0.0.q/src/r3d_hmm.h rscape_v2.0.0.q/src/r2rdepict.h rscape_v2.0.0.q/src/covgrammars.h.bck rscape_v2.0.0.q/src/ratematrix.h rscape_v2.0.0.q/src/pottsbuild.c rscape_v2.0.0.q/src/r3d.h rscape_v2.0.0.q/src/pottsscore.c rscape_v2.0.0.q/src/pottsim.c rscape_v2.0.0.q/src/msamanip.c.bck rscape_v2.0.0.q/src/aggregate.h rscape_v2.0.0.q/src/e1_model.c rscape_v2.0.0.q/src/R-scape-sim.c rscape_v2.0.0.q/src/plot.c rscape_v2.0.0.q/src/rscape_config.h rscape_v2.0.0.q/src/cacofold.c.bck rscape_v2.0.0.q/src/ratebuilder.c rscape_v2.0.0.q/src/maxcov.h rscape_v2.0.0.q/src/power.c rscape_v2.0.0.q/src/miscellaneous.h rscape_v2.0.0.q/src/contactmap.c rscape_v2.0.0.q/src/e1_rate.h rscape_v2.0.0.q/src/covariation.h rscape_v2.0.0.q/src/structure.c rscape_v2.0.0.q/src/logsum.c rscape_v2.0.0.q/src/e2_profilesq.h rscape_v2.0.0.q/src/covgrammars.c.bck rscape_v2.0.0.q/src/correlators.c rscape_v2.0.0.q/src/r3d_hmm.c rscape_v2.0.0.q/src/rscape_config.h.in rscape_v2.0.0.q/src/covgrammars.c rscape_v2.0.0.q/src/cov_simulate.c rscape_v2.0.0.q/src/e1_simulate.c rscape_v2.0.0.q/src/scorematrix2rate.c rscape_v2.0.0.q/src/minimize.c rscape_v2.0.0.q/src/cacofold.h rscape_v2.0.0.q/src/e1_bg.c rscape_v2.0.0.q/src/._cococyk.c rscape_v2.0.0.q/src/cococyk.c rscape_v2.0.0.q/src/msatree.c rscape_v2.0.0.q/src/msamanip.c rscape_v2.0.0.q/src/ribosum_matrix.c rscape_v2.0.0.q/src/allbranchmsa.h rscape_v2.0.0.q/src/e1_emit.h rscape_v2.0.0.q/src/e1_model.h rscape_v2.0.0.q/src/Makefile.in rscape_v2.0.0.q/src/e2_config.h rscape_v2.0.0.q/src/aggregate.c rscape_v2.0.0.q/src/structure.c.bck rscape_v2.0.0.q/src/pottsim.h rscape_v2.0.0.q/src/r3d.c rscape_v2.0.0.q/src/pottsscore.h rscape_v2.0.0.q/src/msafilter.c rscape_v2.0.0.q/src/e2_config.h.in rscape_v2.0.0.q/src/r2rdepict.c rscape_v2.0.0.q/src/pottsbuild.h rscape_v2.0.0.q/src/ratematrix.c rscape_v2.0.0.q/share/man/ rscape_v2.0.0.q/share/doc/ rscape_v2.0.0.q/share/doc/r-scape/ rscape_v2.0.0.q/share/man/man1/ rscape_v2.0.0.q/data/power/ rscape_v2.0.0.q/data/ribosum/ rscape_v2.0.0.q/data/evoparam/ rscape_v2.0.0.q/data/r3d/ rscape_v2.0.0.q/data/r3d/r3d_v0.grm rscape_v2.0.0.q/data/r3d/r3d_v1.grm rscape_v2.0.0.q/data/r3d/R3D.grm rscape_v2.0.0.q/data/evoparam/Pfam.seed.S1000.trainGD.AFG.param rscape_v2.0.0.q/data/evoparam/Pfam.seed.S1000.trainGD.AIF.param rscape_v2.0.0.q/data/ribosum/00README rscape_v2.0.0.q/data/ribosum/ssu-lsu.final.er.ribosum rscape_v2.0.0.q/data/ribosum/ssu.final.er.ribosum rscape_v2.0.0.q/data/power/R-scape.power.double.csv rscape_v2.0.0.q/data/power/R-scape.power.subs.withgaps.csv rscape_v2.0.0.q/data/power/R-scape.power.join.withgaps.csv rscape_v2.0.0.q/data/power/R-scape.power.double.withgaps.csv rscape_v2.0.0.q/data/power/R-scape.power.join.csv rscape_v2.0.0.q/data/power/R-scape.power.subs.csv rscape_v2.0.0.q/lib/infernal/ rscape_v2.0.0.q/lib/00README rscape_v2.0.0.q/lib/._RNAVIEW rscape_v2.0.0.q/lib/RNAVIEW/ rscape_v2.0.0.q/lib/R-view/ rscape_v2.0.0.q/lib/hmmer/ rscape_v2.0.0.q/lib/FastTree/ rscape_v2.0.0.q/lib/R2R/ rscape_v2.0.0.q/lib/R2R/R2R-current/ rscape_v2.0.0.q/lib/R2R/R2R-current/._demo rscape_v2.0.0.q/lib/R2R/R2R-current/demo/ rscape_v2.0.0.q/lib/R2R/R2R-current/._git-version rscape_v2.0.0.q/lib/R2R/R2R-current/git-version rscape_v2.0.0.q/lib/R2R/R2R-current/._r2r-gpl-text.txt rscape_v2.0.0.q/lib/R2R/R2R-current/r2r-gpl-text.txt rscape_v2.0.0.q/lib/R2R/R2R-current/._install-sh rscape_v2.0.0.q/lib/R2R/R2R-current/install-sh rscape_v2.0.0.q/lib/R2R/R2R-current/._configure.ac rscape_v2.0.0.q/lib/R2R/R2R-current/configure.ac rscape_v2.0.0.q/lib/R2R/R2R-current/._configure rscape_v2.0.0.q/lib/R2R/R2R-current/configure rscape_v2.0.0.q/lib/R2R/R2R-current/._codelite-workspace rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/ rscape_v2.0.0.q/lib/R2R/R2R-current/autom4te.cache/ rscape_v2.0.0.q/lib/R2R/R2R-current/._to-do.txt rscape_v2.0.0.q/lib/R2R/R2R-current/to-do.txt rscape_v2.0.0.q/lib/R2R/R2R-current/._bugs rscape_v2.0.0.q/lib/R2R/R2R-current/bugs/ rscape_v2.0.0.q/lib/R2R/R2R-current/._config.guess rscape_v2.0.0.q/lib/R2R/R2R-current/config.guess rscape_v2.0.0.q/lib/R2R/R2R-current/._depcomp rscape_v2.0.0.q/lib/R2R/R2R-current/depcomp rscape_v2.0.0.q/lib/R2R/R2R-current/._info.package rscape_v2.0.0.q/lib/R2R/R2R-current/info.package rscape_v2.0.0.q/lib/R2R/R2R-current/._missing rscape_v2.0.0.q/lib/R2R/R2R-current/missing rscape_v2.0.0.q/lib/R2R/R2R-current/._Makefile.am rscape_v2.0.0.q/lib/R2R/R2R-current/Makefile.am rscape_v2.0.0.q/lib/R2R/R2R-current/._r2r-perl-gpl-text.txt rscape_v2.0.0.q/lib/R2R/R2R-current/r2r-perl-gpl-text.txt rscape_v2.0.0.q/lib/R2R/R2R-current/._config.sub rscape_v2.0.0.q/lib/R2R/R2R-current/config.sub rscape_v2.0.0.q/lib/R2R/R2R-current/._R2R-manual rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/ rscape_v2.0.0.q/lib/R2R/R2R-current/._NotByZasha rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/ rscape_v2.0.0.q/lib/R2R/R2R-current/._Makefile.in rscape_v2.0.0.q/lib/R2R/R2R-current/Makefile.in rscape_v2.0.0.q/lib/R2R/R2R-current/._aclocal.m4 rscape_v2.0.0.q/lib/R2R/R2R-current/aclocal.m4 rscape_v2.0.0.q/lib/R2R/R2R-current/._r2r-license-text.txt rscape_v2.0.0.q/lib/R2R/R2R-current/r2r-license-text.txt rscape_v2.0.0.q/lib/R2R/R2R-current/._R2R-manual.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/._src rscape_v2.0.0.q/lib/R2R/R2R-current/src/ rscape_v2.0.0.q/lib/R2R/R2R-current/src/._R2R-Utils.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/R2R-Utils.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._Optimize.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/Optimize.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._SymbolicMath.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/SymbolicMath.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._PositionBackbone_MultiStemCircular.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/PositionBackbone_MultiStemCircular.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._stdafx.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/stdafx.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._ParseOneStockholm.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/ParseOneStockholm.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._ParseSs.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/ParseSs.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._PositionsToIgnore.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/PositionsToIgnore.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._SvgGraphics.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/SvgGraphics.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._SelectSubFamilyFromStockholm.pl rscape_v2.0.0.q/lib/R2R/R2R-current/src/SelectSubFamilyFromStockholm.pl rscape_v2.0.0.q/lib/R2R/R2R-current/src/._Optimize.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/Optimize.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._GSCConsensus.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/GSCConsensus.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._R2R.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/R2R.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._RnaDrawer.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/RnaDrawer.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._PositionsToIgnore.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/PositionsToIgnore.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/RnaDrawer.o-8fddb3d4 rscape_v2.0.0.q/lib/R2R/R2R-current/src/._R2R_Stockholm.pm rscape_v2.0.0.q/lib/R2R/R2R-current/src/R2R_Stockholm.pm rscape_v2.0.0.q/lib/R2R/R2R-current/src/._PdfGraphics.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/PdfGraphics.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._Optimize_cfsqp.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/Optimize_cfsqp.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._AdobeGraphicsPdfLike.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/AdobeGraphicsPdfLike.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._AdobeGraphics.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/AdobeGraphics.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._R2R.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/R2R.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._GSCConsensus.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/GSCConsensus.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/ParseOneStockholm.o-a3388717 rscape_v2.0.0.q/lib/R2R/R2R-current/src/._vectorPlus.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/vectorPlus.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._CommaSepFileReader.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/CommaSepFileReader.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._MiscExceptions.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/MiscExceptions.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._Makefile.am rscape_v2.0.0.q/lib/R2R/R2R-current/src/Makefile.am rscape_v2.0.0.q/lib/R2R/R2R-current/src/._LabelsAndProjection.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/LabelsAndProjection.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._SymbolicMath.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/SymbolicMath.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._r2rconf.h.in~ rscape_v2.0.0.q/lib/R2R/R2R-current/src/r2rconf.h.in~ rscape_v2.0.0.q/lib/R2R/R2R-current/src/._multiDimVector.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/multiDimVector.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._Optimize_nlopt.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/Optimize_nlopt.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._MiscExceptions.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/MiscExceptions.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._PdfGraphics.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/PdfGraphics.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._SvgGraphics.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/SvgGraphics.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._PositionBackbone.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/PositionBackbone.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._PositionBackbone_MultiStemCircularSolver.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/PositionBackbone_MultiStemCircularSolver.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._UseDebugNew.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/UseDebugNew.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/ParseOneStockholm.o-20de695d rscape_v2.0.0.q/lib/R2R/R2R-current/src/._CommaSepFileReader.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/CommaSepFileReader.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/Stockholm.pm rscape_v2.0.0.q/lib/R2R/R2R-current/src/._AdobeGraphicsPdfLike.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/AdobeGraphicsPdfLike.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._NoUnderflowDouble.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/NoUnderflowDouble.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._AdobeGraphics.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/AdobeGraphics.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/GSCConsensus.o-1cf35986 rscape_v2.0.0.q/lib/R2R/R2R-current/src/._AdobeGraphicsLayout.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/AdobeGraphicsLayout.h rscape_v2.0.0.q/lib/R2R/R2R-current/src/._Makefile.in rscape_v2.0.0.q/lib/R2R/R2R-current/src/Makefile.in rscape_v2.0.0.q/lib/R2R/R2R-current/src/r2rconf.h.in rscape_v2.0.0.q/lib/R2R/R2R-current/src/._AdobeGraphicsLayout.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/AdobeGraphicsLayout.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/src/._SelectSubFamilyFromStockholm.pl~ rscape_v2.0.0.q/lib/R2R/R2R-current/src/SelectSubFamilyFromStockholm.pl~ rscape_v2.0.0.q/lib/R2R/R2R-current/src/._Undos.pl rscape_v2.0.0.q/lib/R2R/R2R-current/src/Undos.pl rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/._infernal-0.7 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/._cfsqp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/._nlopt-2.6.2 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._nlopt_config.h.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/nlopt_config.h.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._mkdocs.yml rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/mkdocs.yml rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._test rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._nlopt.pc.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/nlopt.pc.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._ChangeLog rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/ChangeLog rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._AUTHORS rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/AUTHORS rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._NEWS.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/NEWS.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._TODO rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/TODO rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._README.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/README.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._appveyor.yml rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/appveyor.yml rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._COPYING rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/COPYING rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._.gitignore rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/.gitignore rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._doc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._.travis.yml rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/.travis.yml rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/._src rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/._swig rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/._util rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/._algs rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/._octave rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/._api rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._nlopt-internal.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/nlopt-internal.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._deprecated.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/deprecated.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._nlopt.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/nlopt.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._f77funcs.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/f77funcs.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._optimize.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/optimize.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._nlopt-in.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/nlopt-in.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._nlopt_minimize.3 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/nlopt_minimize.3 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._general.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/general.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._nlopt.3 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/nlopt.3 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._f77api.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/f77api.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._options.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/options.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._nlopt_minimize_constrained.3 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/nlopt_minimize_constrained.3 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/._f77funcs_.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/api/f77funcs_.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_AUGLAG_EQ.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_AUGLAG_EQ.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_SLSQP.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_SLSQP.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_NEWUOA.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_NEWUOA.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GD_STOGO_RAND.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GD_STOGO_RAND.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_MMA.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_MMA.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_MLSL_LDS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_MLSL_LDS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_SBPLX.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_SBPLX.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_VAR2.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_VAR2.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_DIRECT_NOSCAL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_DIRECT_NOSCAL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_TNEWTON_RESTART.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_TNEWTON_RESTART.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_MLSL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_MLSL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_CCSAQ.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_CCSAQ.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_DIRECT_L_RAND.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_DIRECT_L_RAND.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_COBYLA.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_COBYLA.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GD_MLSL_LDS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GD_MLSL_LDS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._mkconstants.sh rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/mkconstants.sh rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_PRAXIS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_PRAXIS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._nlopt_optimize-oct.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/nlopt_optimize-oct.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_VAR1.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_VAR1.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_DIRECT_L.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_DIRECT_L.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GD_MLSL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GD_MLSL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_DIRECT_L_RAND_NOSCAL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_DIRECT_L_RAND_NOSCAL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_ORIG_DIRECT_L.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_ORIG_DIRECT_L.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_ORIG_DIRECT.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_ORIG_DIRECT.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._dummy.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/dummy.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_LBFGS_NOCEDAL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_LBFGS_NOCEDAL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_AUGLAG.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_AUGLAG.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_ISRES.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_ISRES.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_AUGLAG_EQ.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_AUGLAG_EQ.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_TNEWTON.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_TNEWTON.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_NELDERMEAD.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_NELDERMEAD.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_AUGLAG.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_AUGLAG.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._nlopt_optimize.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/nlopt_optimize.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_NEWUOA_BOUND.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_NEWUOA_BOUND.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_AUGLAG.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_AUGLAG.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GD_STOGO.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GD_STOGO.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_DIRECT_L_NOSCAL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_DIRECT_L_NOSCAL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_TNEWTON_PRECOND.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_TNEWTON_PRECOND.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._nlopt_minimize.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/nlopt_minimize.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_CRS2_LM.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_CRS2_LM.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_G_MLSL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_G_MLSL.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_LBFGS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_LBFGS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_G_MLSL_LDS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_G_MLSL_LDS.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_TNEWTON_PRECOND_RESTART.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_TNEWTON_PRECOND_RESTART.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._nlopt_optimize-mex.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/nlopt_optimize-mex.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LD_AUGLAG_EQ.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LD_AUGLAG_EQ.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._nlopt_minimize_constrained.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/nlopt_minimize_constrained.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_DIRECT.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_DIRECT.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_GN_ESCH.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_GN_ESCH.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/._NLOPT_LN_BOBYQA.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/NLOPT_LN_BOBYQA.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._ags rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._stogo rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._direct rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._isres rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/isres/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._auglag rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/auglag/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._cobyla rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._praxis rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/praxis/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._esch rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._cquad rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cquad/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._mma rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._neldermead rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._cdirect rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._newuoa rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._luksan rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._subplex rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/subplex/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._mlsl rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mlsl/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._crs rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/crs/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._slsqp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/._bobyqa rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/._bobyqa.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/bobyqa.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/._bobyqa.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/bobyqa.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/._README.orig rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/bobyqa/README.orig rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/._slsqp.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/slsqp.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/._slsqp.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/slsqp.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/slsqp/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/crs/._crs.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/crs/crs.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/crs/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/crs/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/crs/._crs.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/crs/crs.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mlsl/._mlsl.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mlsl/mlsl.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mlsl/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mlsl/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mlsl/._mlsl.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mlsl/mlsl.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/subplex/._subplex.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/subplex/subplex.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/subplex/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/subplex/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/subplex/._subplex.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/subplex/subplex.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._plis.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/plis.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._mssubs.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/mssubs.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._plip.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/plip.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._pnet.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/pnet.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._pssubs.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/pssubs.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._plip.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/plip.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._plis.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/plis.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._mssubs.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/mssubs.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._luksan.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/luksan.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._pssubs.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/pssubs.for rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._v999-07.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/v999-07.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._pnet.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/pnet.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._pnet.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/pnet.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._plip.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/plip.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/._plis.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/luksan/plis.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/._newuoa.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/newuoa.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/._newuoa.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/newuoa.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/._README.orig rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/newuoa/README.orig rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/._cdirect.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/cdirect.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/._hybrid.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/hybrid.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/._cdirect.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cdirect/cdirect.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/._sbplx.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/sbplx.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/._nldrmd.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/nldrmd.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/._neldermead.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/neldermead/neldermead.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/._mma.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/mma.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/._ccsa_quadratic.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/ccsa_quadratic.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/._mma.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/mma/mma.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cquad/._cquad.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cquad/cquad.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cquad/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cquad/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cquad/._cquad.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cquad/cquad.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/._esch.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/esch.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/._esch.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/esch/esch.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/praxis/._praxis.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/praxis/praxis.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/praxis/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/praxis/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/praxis/._praxis.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/praxis/praxis.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/._cobyla.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/cobyla.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/._cobyla.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/cobyla.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/._README.orig rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/cobyla/README.orig rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/auglag/._auglag.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/auglag/auglag.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/auglag/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/auglag/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/auglag/._auglag.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/auglag/auglag.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/isres/._isres.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/isres/isres.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/isres/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/isres/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/isres/._isres.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/isres/isres.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._direct-internal.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/direct-internal.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._AUTHORS rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/AUTHORS rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._DIRect.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/DIRect.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._DIRsubrout.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/DIRsubrout.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._DIRserial.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/DIRserial.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._userguide.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/userguide.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._COPYING rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/COPYING rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._DIRparallel.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/DIRparallel.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._direct_wrap.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/direct_wrap.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._tstc.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/tstc.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/._direct.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/direct/direct.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._rosen.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/rosen.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._paper.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/paper.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._testfun.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/testfun.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._linalg.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/linalg.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._global.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/global.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._stogo.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/stogo.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._testros.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/testros.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._tst.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/tst.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._tools.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/tools.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._stogo.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/stogo.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._local.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/local.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._tools.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/tools.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._linalg.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/linalg.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._techreport.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/techreport.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._tstc.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/tstc.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._local.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/local.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._stogo_config.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/stogo_config.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._global.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/global.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/._prog.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/stogo/prog.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._evolvent.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/evolvent.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._solver.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/solver.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._data_types.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/data_types.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._ags.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/ags.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._tst.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/tst.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._ags.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/ags.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._local_optimizer.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/local_optimizer.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._local_optimizer.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/local_optimizer.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/COPYRIGHT rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._evolvent.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/evolvent.hpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/._solver.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/algs/ags/solver.cc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._sobolseq_test.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/sobolseq_test.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._redblack_test.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/redblack_test.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._timer.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/timer.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._redblack.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/redblack.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._nlopt-util.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/nlopt-util.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._mt19937ar.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/mt19937ar.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._qsort_r.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/qsort_r.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._nlopt-getopt.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/nlopt-getopt.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._rescale.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/rescale.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._redblack.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/redblack.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._stop.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/stop.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._mt19937ar_test.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/mt19937ar_test.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._nlopt-getopt.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/nlopt-getopt.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._soboldata.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/soboldata.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/._sobolseq.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/util/sobolseq.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/._numpy.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/numpy.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/._CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/._nlopt-exceptions.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/nlopt-exceptions.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/._nlopt.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/nlopt.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/._nlopt-guile.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/nlopt-guile.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/._nlopt-python.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/swig/nlopt-python.i rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/fpclassify.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/nlopt.pc rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/NLoptConfigVersion.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/Makefile rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/cmake_install.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CTestTestfile.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/nlopt_config.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/NLoptConfig.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/NLoptLibraryDepends.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CPackConfig.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CPackSourceConfig.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/build_fpclassify/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/Matlab/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeCache.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/api/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/api/CMakeFiles/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/api/Makefile rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/api/cmake_install.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/api/CMakeFiles/progress.marks rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/api/CMakeFiles/CMakeDirectoryInformation.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/Makefile rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/cmake_install.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/progress.marks rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/CMakeDirectoryInformation.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/DependInfo.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/depend.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/cmake_clean.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/link.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/progress.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/Applications/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/build.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/flags.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/Applications/MATLAB_R2016b.app/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/Applications/MATLAB_R2016b.app/extern/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/src/octave/CMakeFiles/nlopt_optimize-mex.dir/Applications/MATLAB_R2016b.app/extern/version/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/build_fpclassify/CMakeFiles/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/build_fpclassify/CMakeFiles/CMakeTmp/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CheckTypeSize/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-fortran.dir/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CMakeRuleHashes.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/cmake.check_cache rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CMakeOutput.log rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CMakeError.log rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/Makefile.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CMakeTmp/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/Export/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/progress.marks rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/TargetDirectories.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CMakeDirectoryInformation.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-cpp.dir/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/Makefile2 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-cpp.dir/DependInfo.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-cpp.dir/cmake_clean.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-cpp.dir/progress.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-cpp.dir/build.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/Export/lib/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/Export/lib/cmake/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/Export/lib/cmake/nlopt/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/Export/lib/cmake/nlopt/NLoptLibraryDepends-release.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/Export/lib/cmake/nlopt/NLoptLibraryDepends.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CMakeDetermineCompilerABI_CXX.bin rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CMakeDetermineCompilerABI_C.bin rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CompilerIdC/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CompilerIdCXX/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CMakeCXXCompiler.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CMakeCCompiler.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CMakeSystem.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CompilerIdCXX/a.out rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CompilerIdCXX/CMakeCXXCompilerId.cpp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CompilerIdCXX/tmp/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CompilerIdC/CMakeCCompilerId.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CompilerIdC/a.out rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/3.17.3/CompilerIdC/tmp/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/DependInfo.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/depend.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/cmake_clean.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/link.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/progress.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/build.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/flags.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/util/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/api/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/ags/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/stogo/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/direct/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/isres/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/auglag/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/cobyla/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/praxis/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/esch/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/mma/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/neldermead/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/cdirect/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/newuoa/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/luksan/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/mlsl/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/crs/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/slsqp/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/nlopt.dir/src/algs/bobyqa/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-fortran.dir/DependInfo.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-fortran.dir/cmake_clean.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-fortran.dir/progress.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/generate-fortran.dir/build.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CheckTypeSize/SIZEOF_UNSIGNED_LONG.bin rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CheckTypeSize/SIZEOF_UINT32_T.bin rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CheckTypeSize/SIZEOF_UINT32_T.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CheckTypeSize/SIZEOF_UNSIGNED_INT.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CheckTypeSize/SIZEOF_UNSIGNED_LONG.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/CMakeFiles/CheckTypeSize/SIZEOF_UNSIGNED_INT.bin rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/Makefile rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/cmake_install.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CTestTestfile.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/t_tutorial.dir/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/tests.dir/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/progress.marks rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/CMakeDirectoryInformation.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/tests.dir/DependInfo.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/tests.dir/cmake_clean.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/tests.dir/progress.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/tests.dir/build.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/DependInfo.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/__/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/depend.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/cmake_clean.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/link.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/progress.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/build.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/flags.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/__/src/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/testopt.dir/__/src/util/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/t_tutorial.dir/DependInfo.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/t_tutorial.dir/depend.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/t_tutorial.dir/cmake_clean.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/t_tutorial.dir/link.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/t_tutorial.dir/progress.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/t_tutorial.dir/build.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/build/test/CMakeFiles/t_tutorial.dir/flags.make rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/._requirements.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/requirements.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/._docs rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/._README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/README rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Matlab_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Matlab_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_License_and_Copyright.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_License_and_Copyright.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_on_Windows.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_on_Windows.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_manual.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_manual.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Installation.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Installation.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._images rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/images/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_FAQ.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_FAQ.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_C-plus-plus_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_C-plus-plus_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Algorithms.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Algorithms.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_R_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_R_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._index.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/index.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Introduction.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Introduction.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Deprecated_API_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Deprecated_API_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Guile_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Guile_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Fortran_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Fortran_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Tutorial.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Tutorial.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._NLopt_Python_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/NLopt_Python_Reference.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/._Citing_NLopt.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/Citing_NLopt.md rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/images/._Nlopt-logo.png rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/images/Nlopt-logo.png rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/images/._NLopt-example-constraints.png rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/doc/docs/images/NLopt-example-constraints.png rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._TargetLinkLibrariesWithDynamicLookup.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/TargetLinkLibrariesWithDynamicLookup.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._FindOctave.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/FindOctave.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._toolchain-x86_64-w64-mingw32.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/toolchain-x86_64-w64-mingw32.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._generate-cpp.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/generate-cpp.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._generate-fortran.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/generate-fortran.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._FindNumPy.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/FindNumPy.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._toolchain-i686-w64-mingw32.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/toolchain-i686-w64-mingw32.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._NLoptConfig.cmake.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/NLoptConfig.cmake.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._NLoptConfigVersion.cmake.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/NLoptConfigVersion.cmake.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/._FindGuile.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/cmake/FindGuile.cmake rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._myconstraint.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/myconstraint.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/CMakeLists.txt rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._t_octave.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/t_octave.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._testfuncs.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/testfuncs.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._lorentzfit.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/lorentzfit.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._t_guile.scm rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/t_guile.scm rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._myfunc.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/myfunc.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._box.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/box.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._testopt.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/testopt.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._t_tutorial.cxx rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/t_tutorial.cxx rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._testfuncs.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/testfuncs.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._t_python.py rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/t_python.py rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._t_matlab.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/t_matlab.m rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/._t_fortran.f90 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/t_fortran.f90 rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/._qld.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/qld.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/._Makefile.am rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/Makefile.am rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/._cfsqpusr.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/cfsqpusr.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/._Makefile.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/cfsqp/Makefile.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/._00README-R2R rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/00README-R2R rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/._squid rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/ rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._dirichlet.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/dirichlet.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sqio.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sqio.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._seqstat_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/seqstat_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._dayhoff.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/dayhoff.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._msa.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/msa.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._iupac.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/iupac.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._alignio.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/alignio.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._stopwatch.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/stopwatch.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._clustal.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/clustal.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sre_stack.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sre_stack.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._translate_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/translate_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._afetch_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/afetch_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._gki.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/gki.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sqerror.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sqerror.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._wuss.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/wuss.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sre_random.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sre_random.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._vectorops.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/vectorops.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._rk.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/rk.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._ssi.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/ssi.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._aligneval.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/aligneval.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sre_string.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sre_string.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._shuffle.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/shuffle.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sqfuncs.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sqfuncs.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._selex.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/selex.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._stockholm.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/stockholm.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._shuffle_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/shuffle_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sindex_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sindex_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._eps.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/eps.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._Makefile.am rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/Makefile.am rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._msa.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/msa.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._hsregex.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/hsregex.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._compstruct_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/compstruct_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._dirichlet.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/dirichlet.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._cluster.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/cluster.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sre_stack.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sre_stack.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._types.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/types.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._stopwatch.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/stopwatch.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._seqencode.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/seqencode.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._revcomp.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/revcomp.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sre_ctype.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sre_ctype.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/alignio-4e733752.o.tmp rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._a2m.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/a2m.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._weight_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/weight_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._alistat_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/alistat_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sre_math.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sre_math.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._weight.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/weight.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._revcomp_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/revcomp_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._file.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/file.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._rk.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/rk.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._vectorops.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/vectorops.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sre_random.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sre_random.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._squidcore.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/squidcore.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sreformat_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sreformat_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._ssi.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/ssi.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._msf.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/msf.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._translate.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/translate.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._sfetch_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/sfetch_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._seqsplit_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/seqsplit_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._gki.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/gki.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._compalign_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/compalign_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._test_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/test_main.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._squid.h.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/squid.h.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._Makefile.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/Makefile.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._getopt.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/getopt.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._squidconf.h.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/squidconf.h.in rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._stockholm.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/stockholm.h rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/._phylip.c rscape_v2.0.0.q/lib/R2R/R2R-current/NotByZasha/infernal-0.7/squid/phylip.c rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/._bio.bib rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/bio.bib rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/._R2R-manual.tex rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/R2R-manual.tex rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/._figures rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/ rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-SAM-IV-alternate.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-SAM-IV-alternate.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-cyano-30S.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-cyano-30S.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._place_explicit.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/place_explicit.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-breakpair.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-breakpair.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-iii.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-iii.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._CTTmp0 rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/CTTmp0 rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-cyano-30S.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-cyano-30S.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver-manA.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver-manA.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver-HEARO2.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver-HEARO2.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo1.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo1.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._manA-logo.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/manA-logo.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver-manA-older-R2R.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver-manA-older-R2R.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._modular-demo.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/modular-demo.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo1.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo1.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._modular-c4.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/modular-c4.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._manA-cover.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/manA-cover.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-breakpair-varlen.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-breakpair-varlen.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._modular-demo.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/modular-demo.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-SAM-IV-alternate.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-SAM-IV-alternate.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-default.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-default.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._turnsteminternal.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/turnsteminternal.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-pknot-inline.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-pknot-inline.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver-HEARO2.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver-HEARO2.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver-IMES-1.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver-IMES-1.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-default.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-default.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver-IMES-1.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver-IMES-1.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-iii.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-iii.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-pknot-callout.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-pknot-callout.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._place_explicit.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/place_explicit.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._turnsteminternal.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/turnsteminternal.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._Weinberg 103 motifs Suppl Fig 1.png rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/Weinberg 103 motifs Suppl Fig 1.png rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._SAM-VI.png rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/SAM-VI.png rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-ii.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-ii.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver-manA.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver-manA.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-solver.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-solver.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._manA-cover.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/manA-cover.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-breakpair-varlen.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-breakpair-varlen.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo1 copy.svg rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo1 copy.svg rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-manual.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-manual.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._multistem-manual.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/multistem-manual.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-pknot-inline.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-pknot-inline.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-pknot-callout.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-pknot-callout.pdf rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-breakpair.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-breakpair.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/._demo-ii.ai rscape_v2.0.0.q/lib/R2R/R2R-current/R2R-manual/figures/demo-ii.ai rscape_v2.0.0.q/lib/R2R/R2R-current/bugs/._bug2-flip-e-and-e++-then-it-works.sto rscape_v2.0.0.q/lib/R2R/R2R-current/bugs/bug2-flip-e-and-e++-then-it-works.sto rscape_v2.0.0.q/lib/R2R/R2R-current/bugs/._bug1-switch-which-pairs-in-which-SS-cons-then-it-works.sto rscape_v2.0.0.q/lib/R2R/R2R-current/bugs/bug1-switch-which-pairs-in-which-SS-cons-then-it-works.sto rscape_v2.0.0.q/lib/R2R/R2R-current/autom4te.cache/traces.0 rscape_v2.0.0.q/lib/R2R/R2R-current/autom4te.cache/output.0 rscape_v2.0.0.q/lib/R2R/R2R-current/autom4te.cache/requests rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/._Makefile rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/Makefile rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/._R2R rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/R2R/ rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/._R2R.workspace rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/R2R.workspace rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/R2R/._R2R.mk rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/R2R/R2R.mk rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/R2R/._R2R.txt rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/R2R/R2R.txt rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/R2R/._R2R.project rscape_v2.0.0.q/lib/R2R/R2R-current/codelite-workspace/R2R/R2R.project rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._104 rscape_v2.0.0.q/lib/R2R/R2R-current/demo/104/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._hammerhead rscape_v2.0.0.q/lib/R2R/R2R-current/demo/hammerhead/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._MetamakeDemos.pl rscape_v2.0.0.q/lib/R2R/R2R-current/demo/MetamakeDemos.pl rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._c-di-GMP-II rscape_v2.0.0.q/lib/R2R/R2R-current/demo/c-di-GMP-II/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._Makefile rscape_v2.0.0.q/lib/R2R/R2R-current/demo/Makefile rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._SAM-IV rscape_v2.0.0.q/lib/R2R/R2R-current/demo/SAM-IV/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._SAH rscape_v2.0.0.q/lib/R2R/R2R-current/demo/SAH/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._additional rscape_v2.0.0.q/lib/R2R/R2R-current/demo/additional/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._intermediate rscape_v2.0.0.q/lib/R2R/R2R-current/demo/intermediate/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._Moco rscape_v2.0.0.q/lib/R2R/R2R-current/demo/Moco/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._exceptional rscape_v2.0.0.q/lib/R2R/R2R-current/demo/exceptional/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._THF rscape_v2.0.0.q/lib/R2R/R2R-current/demo/THF/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._22 rscape_v2.0.0.q/lib/R2R/R2R-current/demo/22/ rscape_v2.0.0.q/lib/R2R/R2R-current/demo/._pedagogical rscape_v2.0.0.q/lib/R2R/R2R-current/demo/pedagogical/ rscape_v2.0.0.q/lib/FastTree/00README rscape_v2.0.0.q/lib/FastTree/src/ rscape_v2.0.0.q/lib/FastTree/src/install-sh rscape_v2.0.0.q/lib/FastTree/src/._FastTree.c rscape_v2.0.0.q/lib/FastTree/src/FastTree.c rscape_v2.0.0.q/lib/FastTree/src/Makefile.in rscape_v2.0.0.q/lib/FastTree/src/aclocal.m4 rscape_v2.0.0.q/lib/hmmer/documentation/ rscape_v2.0.0.q/lib/hmmer/install-sh rscape_v2.0.0.q/lib/hmmer/configure.ac rscape_v2.0.0.q/lib/hmmer/tutorial/ rscape_v2.0.0.q/lib/hmmer/INSTALL rscape_v2.0.0.q/lib/hmmer/libdivsufsort/ rscape_v2.0.0.q/lib/hmmer/LICENSE rscape_v2.0.0.q/lib/hmmer/test-speed/ rscape_v2.0.0.q/lib/hmmer/configure rscape_v2.0.0.q/lib/hmmer/Makefile rscape_v2.0.0.q/lib/hmmer/testsuite/ rscape_v2.0.0.q/lib/hmmer/config.guess rscape_v2.0.0.q/lib/hmmer/release-notes/ rscape_v2.0.0.q/lib/hmmer/contrib/ rscape_v2.0.0.q/lib/hmmer/README.md rscape_v2.0.0.q/lib/hmmer/config.status rscape_v2.0.0.q/lib/hmmer/config.sub rscape_v2.0.0.q/lib/hmmer/autobuild/ rscape_v2.0.0.q/lib/hmmer/profmark/ rscape_v2.0.0.q/lib/hmmer/makeTAGS.sh rscape_v2.0.0.q/lib/hmmer/config.log rscape_v2.0.0.q/lib/hmmer/easel/ rscape_v2.0.0.q/lib/hmmer/Makefile.in rscape_v2.0.0.q/lib/hmmer/src/ rscape_v2.0.0.q/lib/hmmer/src/itest_brute.c rscape_v2.0.0.q/lib/hmmer/src/p7_hmmd_search_stats.c rscape_v2.0.0.q/lib/hmmer/src/p7_gmx.c rscape_v2.0.0.q/lib/hmmer/src/hmmdutils.c rscape_v2.0.0.q/lib/hmmer/src/hmmd_search_status.c rscape_v2.0.0.q/lib/hmmer/src/hmmpgmd_client_example.pl rscape_v2.0.0.q/lib/hmmer/src/hmmdwrkr_shard.c rscape_v2.0.0.q/lib/hmmer/src/cachedb_shard.h rscape_v2.0.0.q/lib/hmmer/src/p7_tophits.c rscape_v2.0.0.q/lib/hmmer/src/generic_fwdback_banded.c rscape_v2.0.0.q/lib/hmmer/src/hmmscan.c rscape_v2.0.0.q/lib/hmmer/src/modelconfig.c rscape_v2.0.0.q/lib/hmmer/src/p7_gmxchk.h rscape_v2.0.0.q/lib/hmmer/src/generic_stotrace.c rscape_v2.0.0.q/lib/hmmer/src/generic_null2.c rscape_v2.0.0.q/lib/hmmer/src/p7_alidisplay.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/ rscape_v2.0.0.q/lib/hmmer/src/evalues.c rscape_v2.0.0.q/lib/hmmer/src/hmmemit.c rscape_v2.0.0.q/lib/hmmer/src/p7_gbands.c rscape_v2.0.0.q/lib/hmmer/src/p7_hmmcache.h rscape_v2.0.0.q/lib/hmmer/src/emit.c rscape_v2.0.0.q/lib/hmmer/src/p7_gmxb.c rscape_v2.0.0.q/lib/hmmer/src/hmmpress.c rscape_v2.0.0.q/lib/hmmer/src/hmmbuild.c rscape_v2.0.0.q/lib/hmmer/src/cachedb.h rscape_v2.0.0.q/lib/hmmer/src/alimask.c rscape_v2.0.0.q/lib/hmmer/src/nhmmscan.c rscape_v2.0.0.q/lib/hmmer/src/hmmpgmd.c rscape_v2.0.0.q/lib/hmmer/src/p7_prior.c rscape_v2.0.0.q/lib/hmmer/src/p7_scoredata.c rscape_v2.0.0.q/lib/hmmer/src/generic_fwdback_chk.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/ rscape_v2.0.0.q/lib/hmmer/src/tracealign.c rscape_v2.0.0.q/lib/hmmer/src/hmmpress.itest.pl rscape_v2.0.0.q/lib/hmmer/src/p7_builder.c rscape_v2.0.0.q/lib/hmmer/src/p7_bg.c rscape_v2.0.0.q/lib/hmmer/src/hmmpgmd_shard.h rscape_v2.0.0.q/lib/hmmer/src/hmmer.h rscape_v2.0.0.q/lib/hmmer/src/p7_hit.c rscape_v2.0.0.q/lib/hmmer/src/seqmodel.c rscape_v2.0.0.q/lib/hmmer/src/generic_decoding.c rscape_v2.0.0.q/lib/hmmer/src/hmmalign.c rscape_v2.0.0.q/lib/hmmer/src/fm_alphabet.c rscape_v2.0.0.q/lib/hmmer/src/generic_viterbi.c rscape_v2.0.0.q/lib/hmmer/src/h2_io.c rscape_v2.0.0.q/lib/hmmer/src/fm_sse.c rscape_v2.0.0.q/lib/hmmer/src/p7_domaindef.c rscape_v2.0.0.q/lib/hmmer/src/generic_fwdback_rescaled.c rscape_v2.0.0.q/lib/hmmer/src/p7_spensemble.c rscape_v2.0.0.q/lib/hmmer/src/cachedb_shard.c rscape_v2.0.0.q/lib/hmmer/src/hmmdmstr.c rscape_v2.0.0.q/lib/hmmer/src/p7_hmmwindow.c rscape_v2.0.0.q/lib/hmmer/src/p7_hmm.c rscape_v2.0.0.q/lib/hmmer/src/nhmmer.c rscape_v2.0.0.q/lib/hmmer/src/fm_general.c rscape_v2.0.0.q/lib/hmmer/src/hmmdwrkr.c rscape_v2.0.0.q/lib/hmmer/src/generic_msv.c rscape_v2.0.0.q/lib/hmmer/src/hmmsim.c rscape_v2.0.0.q/lib/hmmer/src/fm_ssv.c rscape_v2.0.0.q/lib/hmmer/src/hmmlogo.c rscape_v2.0.0.q/lib/hmmer/src/build.c rscape_v2.0.0.q/lib/hmmer/src/makehmmerdb.c rscape_v2.0.0.q/lib/hmmer/src/jackhmmer.c rscape_v2.0.0.q/lib/hmmer/src/p7_pipeline.c rscape_v2.0.0.q/lib/hmmer/src/generic_optacc.c rscape_v2.0.0.q/lib/hmmer/src/modelstats.c rscape_v2.0.0.q/lib/hmmer/src/p7_config.h.in rscape_v2.0.0.q/lib/hmmer/src/hmmc2.c rscape_v2.0.0.q/lib/hmmer/src/heatmap.c rscape_v2.0.0.q/lib/hmmer/src/logsum.c rscape_v2.0.0.q/lib/hmmer/src/hmmstat.c rscape_v2.0.0.q/lib/hmmer/src/generic_fwdback.c rscape_v2.0.0.q/lib/hmmer/src/p7_gmxchk.c rscape_v2.0.0.q/lib/hmmer/src/phmmer.c rscape_v2.0.0.q/lib/hmmer/src/hmmsearch.c rscape_v2.0.0.q/lib/hmmer/src/generic_vtrace.c rscape_v2.0.0.q/lib/hmmer/src/mpisupport.c rscape_v2.0.0.q/lib/hmmer/src/cachedb.c rscape_v2.0.0.q/lib/hmmer/src/hmmpgmd.h rscape_v2.0.0.q/lib/hmmer/src/p7_gmxb.h rscape_v2.0.0.q/lib/hmmer/src/p7_null3.c rscape_v2.0.0.q/lib/hmmer/src/#hmmer.h# rscape_v2.0.0.q/lib/hmmer/src/p7_trace.c rscape_v2.0.0.q/lib/hmmer/src/p7_hmmcache.c rscape_v2.0.0.q/lib/hmmer/src/p7_gbands.h rscape_v2.0.0.q/lib/hmmer/src/hmmerfm-exactmatch.c rscape_v2.0.0.q/lib/hmmer/src/Makefile.in rscape_v2.0.0.q/lib/hmmer/src/eweight.c rscape_v2.0.0.q/lib/hmmer/src/hmmpgmd2msa.c rscape_v2.0.0.q/lib/hmmer/src/hmmer.c rscape_v2.0.0.q/lib/hmmer/src/hmmpgmd_shard.c rscape_v2.0.0.q/lib/hmmer/src/p7_profile.c rscape_v2.0.0.q/lib/hmmer/src/hmmdmstr_shard.c rscape_v2.0.0.q/lib/hmmer/src/hmmconvert.c rscape_v2.0.0.q/lib/hmmer/src/p7_domain.c rscape_v2.0.0.q/lib/hmmer/src/errors.c rscape_v2.0.0.q/lib/hmmer/src/hmmfetch.c rscape_v2.0.0.q/lib/hmmer/src/p7_hmmfile.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/p7_oprofile.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/optacc.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/vitscore.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/io.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/decoding.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/msvfilter.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/impl_vmx.h rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/fwdback.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/p7_omx.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/null2.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/vitfilter.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/stotrace.c rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/00MANIFEST rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/Makefile.in rscape_v2.0.0.q/lib/hmmer/src/impl_vmx/mpi.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/p7_oprofile.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/optacc.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/vitscore.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/io.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/decoding.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/msvfilter.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/fbparsers.tex rscape_v2.0.0.q/lib/hmmer/src/impl_sse/ssvfilter.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/impl_sse.h rscape_v2.0.0.q/lib/hmmer/src/impl_sse/fwdback.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/p7_omx.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/null2.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/p7_omx.ai rscape_v2.0.0.q/lib/hmmer/src/impl_sse/vitfilter.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/stotrace.c rscape_v2.0.0.q/lib/hmmer/src/impl_sse/00MANIFEST rscape_v2.0.0.q/lib/hmmer/src/impl_sse/Makefile.in rscape_v2.0.0.q/lib/hmmer/src/impl_sse/mpi.c rscape_v2.0.0.q/lib/hmmer/easel/esl_sse.h rscape_v2.0.0.q/lib/hmmer/easel/esl_regexp.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_exponential.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msashuffle.c rscape_v2.0.0.q/lib/hmmer/easel/esl_alphabet.h rscape_v2.0.0.q/lib/hmmer/easel/#esl_buffer.c# rscape_v2.0.0.q/lib/hmmer/easel/esl_random.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_stockholm.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_a2m.c rscape_v2.0.0.q/lib/hmmer/easel/esl_recorder.h rscape_v2.0.0.q/lib/hmmer/easel/esl_gev.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_vmx.h rscape_v2.0.0.q/lib/hmmer/easel/esl_cluster.h rscape_v2.0.0.q/lib/hmmer/easel/miniapps/ rscape_v2.0.0.q/lib/hmmer/easel/esl_ssi.c rscape_v2.0.0.q/lib/hmmer/easel/esl_heap.h rscape_v2.0.0.q/lib/hmmer/easel/esl_hyperexp.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_mpi.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_wuss.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_subcmd.c rscape_v2.0.0.q/lib/hmmer/easel/esl_dmatrix.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_keyhash.h rscape_v2.0.0.q/lib/hmmer/easel/esl_arr3.h rscape_v2.0.0.q/lib/hmmer/easel/esl_sq.c rscape_v2.0.0.q/lib/hmmer/easel/esl_mem.h rscape_v2.0.0.q/lib/hmmer/easel/esl_stretchexp.h rscape_v2.0.0.q/lib/hmmer/easel/esl_matrixops.c rscape_v2.0.0.q/lib/hmmer/easel/documentation/ rscape_v2.0.0.q/lib/hmmer/easel/esl_getopts.c rscape_v2.0.0.q/lib/hmmer/easel/esl_dsqdata.tex rscape_v2.0.0.q/lib/hmmer/easel/install-sh rscape_v2.0.0.q/lib/hmmer/easel/configure.ac rscape_v2.0.0.q/lib/hmmer/easel/esl_regexp.h rscape_v2.0.0.q/lib/hmmer/easel/esl_getopts.md rscape_v2.0.0.q/lib/hmmer/easel/esl_dirichlet.h rscape_v2.0.0.q/lib/hmmer/easel/esl_sqio.h rscape_v2.0.0.q/lib/hmmer/easel/esl_randomseq.c rscape_v2.0.0.q/lib/hmmer/easel/esl_randomseq.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_stopwatch.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_quicksort.h rscape_v2.0.0.q/lib/hmmer/easel/esl_json.h rscape_v2.0.0.q/lib/hmmer/easel/esl_fileparser.h rscape_v2.0.0.q/lib/hmmer/easel/LICENSE.sh rscape_v2.0.0.q/lib/hmmer/easel/interface_gsl.h rscape_v2.0.0.q/lib/hmmer/easel/formats/ rscape_v2.0.0.q/lib/hmmer/easel/esl_hmm.c rscape_v2.0.0.q/lib/hmmer/easel/esl_swat.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_stopwatch.c rscape_v2.0.0.q/lib/hmmer/easel/#esl_msa.c# rscape_v2.0.0.q/lib/hmmer/easel/esl_neon.c rscape_v2.0.0.q/lib/hmmer/easel/esl_rand64.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msa.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_mpi.c rscape_v2.0.0.q/lib/hmmer/easel/LICENSE rscape_v2.0.0.q/lib/hmmer/easel/esl_gencode.c rscape_v2.0.0.q/lib/hmmer/easel/esl_stats.c rscape_v2.0.0.q/lib/hmmer/easel/esl_red_black.h rscape_v2.0.0.q/lib/hmmer/easel/demotic/ rscape_v2.0.0.q/lib/hmmer/easel/test rscape_v2.0.0.q/lib/hmmer/easel/esl_scorematrix.h rscape_v2.0.0.q/lib/hmmer/easel/esl_avx512.c rscape_v2.0.0.q/lib/hmmer/easel/esl_alloc.c rscape_v2.0.0.q/lib/hmmer/easel/easel.c rscape_v2.0.0.q/lib/hmmer/easel/configure rscape_v2.0.0.q/lib/hmmer/easel/esl_graph.h rscape_v2.0.0.q/lib/hmmer/easel/esl_distance.c rscape_v2.0.0.q/lib/hmmer/easel/esl_histogram.c rscape_v2.0.0.q/lib/hmmer/easel/esl_composition.h rscape_v2.0.0.q/lib/hmmer/easel/esl_gev.c rscape_v2.0.0.q/lib/hmmer/easel/esl_tree.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_weibull.h rscape_v2.0.0.q/lib/hmmer/easel/esl_paml.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_phylip.c rscape_v2.0.0.q/lib/hmmer/easel/esl_workqueue.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msa.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile2.h rscape_v2.0.0.q/lib/hmmer/easel/esl_tree.c rscape_v2.0.0.q/lib/hmmer/easel/esl_buffer.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_sqio_ascii.h rscape_v2.0.0.q/lib/hmmer/easel/esl_hyperexp.h rscape_v2.0.0.q/lib/hmmer/easel/esl_arr2.c rscape_v2.0.0.q/lib/hmmer/easel/esl_weibull.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_vectorops.c rscape_v2.0.0.q/lib/hmmer/easel/testsuite/ rscape_v2.0.0.q/lib/hmmer/easel/esl_ratematrix.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msaweight.c rscape_v2.0.0.q/lib/hmmer/easel/esl_rootfinder.h rscape_v2.0.0.q/lib/hmmer/easel/esl_sqio_ncbi.c rscape_v2.0.0.q/lib/hmmer/easel/esl_normal.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_mixgev.c rscape_v2.0.0.q/lib/hmmer/easel/esl_alphabet.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_psiblast.c rscape_v2.0.0.q/lib/hmmer/easel/esl_bitfield.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_selex.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msacluster.h rscape_v2.0.0.q/lib/hmmer/easel/esl_threads.h rscape_v2.0.0.q/lib/hmmer/easel/esl_minimizer.c rscape_v2.0.0.q/lib/hmmer/easel/esl_dsqdata.c rscape_v2.0.0.q/lib/hmmer/easel/esl_varint.c rscape_v2.0.0.q/lib/hmmer/easel/esl_swat.c rscape_v2.0.0.q/lib/hmmer/easel/esl_normal.h rscape_v2.0.0.q/lib/hmmer/easel/esl_cpu.h rscape_v2.0.0.q/lib/hmmer/easel/interface_lapack.h rscape_v2.0.0.q/lib/hmmer/easel/esl_vectorops.md rscape_v2.0.0.q/lib/hmmer/easel/esl_wuss.h rscape_v2.0.0.q/lib/hmmer/easel/esl_gamma.c rscape_v2.0.0.q/lib/hmmer/easel/esl_cluster.tex rscape_v2.0.0.q/lib/hmmer/easel/config.guess rscape_v2.0.0.q/lib/hmmer/easel/esl_gumbel.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_clustal.c rscape_v2.0.0.q/lib/hmmer/easel/esl_dmatrix.h rscape_v2.0.0.q/lib/hmmer/easel/esl_mixdchlet.h rscape_v2.0.0.q/lib/hmmer/easel/esl_sqio.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_huffman.c rscape_v2.0.0.q/lib/hmmer/easel/esl_stack.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_afa.c rscape_v2.0.0.q/lib/hmmer/easel/esl_histogram.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_config.h.in rscape_v2.0.0.q/lib/hmmer/easel/esl_buffer.h rscape_v2.0.0.q/lib/hmmer/easel/esl_scorematrix.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_random.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_varint.md rscape_v2.0.0.q/lib/hmmer/easel/esl_vectorops.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_avx.c rscape_v2.0.0.q/lib/hmmer/easel/esl_sse.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_mem.md rscape_v2.0.0.q/lib/hmmer/easel/README.md rscape_v2.0.0.q/lib/hmmer/easel/esl_dirichlet.c rscape_v2.0.0.q/lib/hmmer/easel/esl_regexp.c rscape_v2.0.0.q/lib/hmmer/easel/esl_stretchexp.c rscape_v2.0.0.q/lib/hmmer/easel/esl_sq.h rscape_v2.0.0.q/lib/hmmer/easel/esl_mem.c rscape_v2.0.0.q/lib/hmmer/easel/esl_keyhash.c rscape_v2.0.0.q/lib/hmmer/easel/esl_arr3.c rscape_v2.0.0.q/lib/hmmer/easel/esl_subcmd.h rscape_v2.0.0.q/lib/hmmer/easel/esl_getopts.h rscape_v2.0.0.q/lib/hmmer/easel/esl_matrixops.h rscape_v2.0.0.q/lib/hmmer/easel/esl_ssi.tex rscape_v2.0.0.q/lib/hmmer/easel/config.sub rscape_v2.0.0.q/lib/hmmer/easel/esl_keyhash.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_vmx.c rscape_v2.0.0.q/lib/hmmer/easel/esl_recorder.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_stockholm.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_a2m.h rscape_v2.0.0.q/lib/hmmer/easel/esl_gamma.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_heap.c rscape_v2.0.0.q/lib/hmmer/easel/esl_ssi.h rscape_v2.0.0.q/lib/hmmer/easel/esl_cluster.c rscape_v2.0.0.q/lib/hmmer/easel/esl_sse.c rscape_v2.0.0.q/lib/hmmer/easel/esl_getopts.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_random.c rscape_v2.0.0.q/lib/hmmer/easel/esl_alphabet.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msashuffle.h rscape_v2.0.0.q/lib/hmmer/easel/esl_exponential.h rscape_v2.0.0.q/lib/hmmer/easel/esl_graph.c rscape_v2.0.0.q/lib/hmmer/easel/esl_distance.h rscape_v2.0.0.q/lib/hmmer/easel/esl_paml.h rscape_v2.0.0.q/lib/hmmer/easel/#esl_mem.c# rscape_v2.0.0.q/lib/hmmer/easel/esl_weibull.c rscape_v2.0.0.q/lib/hmmer/easel/esl_distance.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_gev.h rscape_v2.0.0.q/lib/hmmer/easel/esl_gumbel.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_composition.c rscape_v2.0.0.q/lib/hmmer/easel/esl_histogram.h rscape_v2.0.0.q/lib/hmmer/easel/esl_red_black.c rscape_v2.0.0.q/lib/hmmer/easel/esl_scorematrix.c rscape_v2.0.0.q/lib/hmmer/easel/esl_avx512.h rscape_v2.0.0.q/lib/hmmer/easel/esl_ratematrix.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_stats.h rscape_v2.0.0.q/lib/hmmer/easel/esl_gencode.h rscape_v2.0.0.q/lib/hmmer/easel/esl_alloc.md rscape_v2.0.0.q/lib/hmmer/easel/easel.h rscape_v2.0.0.q/lib/hmmer/easel/esl_alloc.h rscape_v2.0.0.q/lib/hmmer/easel/interface_gsl.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msaweight.md rscape_v2.0.0.q/lib/hmmer/easel/esl_mpi.h rscape_v2.0.0.q/lib/hmmer/easel/esl_rand64.c rscape_v2.0.0.q/lib/hmmer/easel/esl_stopwatch.h rscape_v2.0.0.q/lib/hmmer/easel/esl_neon.h rscape_v2.0.0.q/lib/hmmer/easel/esl_hmm.h rscape_v2.0.0.q/lib/hmmer/easel/esl_quicksort.c rscape_v2.0.0.q/lib/hmmer/easel/esl_rootfinder.tex rscape_v2.0.0.q/lib/hmmer/easel/m4/ rscape_v2.0.0.q/lib/hmmer/easel/esl_sq.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_sqio.c rscape_v2.0.0.q/lib/hmmer/easel/esl_randomseq.h rscape_v2.0.0.q/lib/hmmer/easel/esl_fileparser.c rscape_v2.0.0.q/lib/hmmer/easel/esl_json.c rscape_v2.0.0.q/lib/hmmer/easel/makeTAGS.sh rscape_v2.0.0.q/lib/hmmer/easel/esl_mixgev.h rscape_v2.0.0.q/lib/hmmer/easel/esl_stretchexp.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_stack.tex rscape_v2.0.0.q/lib/hmmer/easel/devkit/ rscape_v2.0.0.q/lib/hmmer/easel/esl_dirichlet.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_msaweight.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_sqio_ncbi.h rscape_v2.0.0.q/lib/hmmer/easel/esl_rootfinder.c rscape_v2.0.0.q/lib/hmmer/easel/esl_ratematrix.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msaweight.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msacluster.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_sqio_ascii.c rscape_v2.0.0.q/lib/hmmer/easel/esl_vectorops.h rscape_v2.0.0.q/lib/hmmer/easel/esl_arr2.h rscape_v2.0.0.q/lib/hmmer/easel/esl_fileparser.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_hyperexp.c rscape_v2.0.0.q/lib/hmmer/easel/esl_exponential.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_workqueue.c rscape_v2.0.0.q/lib/hmmer/easel/esl_paml.tex rscape_v2.0.0.q/lib/hmmer/easel/decoy_config.h.in rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_phylip.h rscape_v2.0.0.q/lib/hmmer/easel/esl_tree.h rscape_v2.0.0.q/lib/hmmer/easel/esl_mixdchlet.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_msa.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile2.c rscape_v2.0.0.q/lib/hmmer/easel/#esl_msafile_stockholm.c# rscape_v2.0.0.q/lib/hmmer/easel/esl_stats.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_buffer.c rscape_v2.0.0.q/lib/hmmer/easel/easel.tex rscape_v2.0.0.q/lib/hmmer/easel/Makefile.in rscape_v2.0.0.q/lib/hmmer/easel/esl_avx.h rscape_v2.0.0.q/lib/hmmer/easel/esl_mixdchlet.c rscape_v2.0.0.q/lib/hmmer/easel/esl_dmatrix.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_clustal.h rscape_v2.0.0.q/lib/hmmer/easel/esl_gumbel.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_afa.h rscape_v2.0.0.q/lib/hmmer/easel/esl_stack.h rscape_v2.0.0.q/lib/hmmer/easel/esl_huffman.h rscape_v2.0.0.q/lib/hmmer/easel/esl_cpu.c rscape_v2.0.0.q/lib/hmmer/easel/interface_lapack.c rscape_v2.0.0.q/lib/hmmer/easel/esl_normal.c rscape_v2.0.0.q/lib/hmmer/easel/esl_varint.h rscape_v2.0.0.q/lib/hmmer/easel/#easel.c# rscape_v2.0.0.q/lib/hmmer/easel/esl_minimizer.tex rscape_v2.0.0.q/lib/hmmer/easel/esl_wuss.c rscape_v2.0.0.q/lib/hmmer/easel/esl_gamma.h rscape_v2.0.0.q/lib/hmmer/easel/esl_bitfield.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_psiblast.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile.md rscape_v2.0.0.q/lib/hmmer/easel/esl_dsqdata.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/ rscape_v2.0.0.q/lib/hmmer/easel/esl_threads.c rscape_v2.0.0.q/lib/hmmer/easel/esl_minimizer.h rscape_v2.0.0.q/lib/hmmer/easel/esl_msacluster.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msafile_selex.c rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/ rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/ rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/a2m/ rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/psiblast/ rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/afa/ rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/clustal/ rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylips/ rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/ rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.bad.6 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.bad.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.bad.8 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.bad.7 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.bad.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.bad.5 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.good.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.bad.4 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/stockholm/stockholm.bad.3 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylips/phylips.good.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylips/phylips.good.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/clustal/clustal.good.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/clustal/clustal.good.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/afa/afa.good.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/afa/afa.good.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/afa/afa.good.3 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/psiblast/psiblast.good.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/psiblast/psiblast.good.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/a2m/a2m.good.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/a2m/a2m.good.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.12 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.13 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.14 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.9 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.7 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.6 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.good.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.8 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.11 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.10 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.good.4 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.4 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.good.3 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.3 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.good.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/selex.bad.5 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/selex/00MANIFEST rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.11 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.10 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.good.3 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.4 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.3 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.good.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.2 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.5 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.ambig.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.9 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.7 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.6 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.1 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.bad.8 rscape_v2.0.0.q/lib/hmmer/easel/esl_msa_testfiles/phylip/phylip.good.1 rscape_v2.0.0.q/lib/hmmer/easel/devkit/ctags-fix rscape_v2.0.0.q/lib/hmmer/easel/devkit/cexcerpt.man rscape_v2.0.0.q/lib/hmmer/easel/devkit/autodoc rscape_v2.0.0.q/lib/hmmer/easel/devkit/man2optlist rscape_v2.0.0.q/lib/hmmer/easel/devkit/sedition-pp rscape_v2.0.0.q/lib/hmmer/easel/devkit/00README rscape_v2.0.0.q/lib/hmmer/easel/devkit/rmanprocess.pl rscape_v2.0.0.q/lib/hmmer/easel/devkit/rmanprocess.py rscape_v2.0.0.q/lib/hmmer/easel/devkit/cexcerpt rscape_v2.0.0.q/lib/hmmer/easel/devkit/c2optlist rscape_v2.0.0.q/lib/hmmer/easel/devkit/sqc rscape_v2.0.0.q/lib/hmmer/easel/devkit/sedition rscape_v2.0.0.q/lib/hmmer/easel/m4/esl_avx.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/esl_vmx.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/ax_compiler_vendor.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/ax_mpi.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/esl_sse.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/ax_check_compile_flag.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/esl_avx512.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/esl_sse4.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/ax_check_gnu_make.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/ax_gcc_func_attribute.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/ax_pthread.m4 rscape_v2.0.0.q/lib/hmmer/easel/m4/esl_neon.m4 rscape_v2.0.0.q/lib/hmmer/easel/testsuite/i2-ncbi-indices.pl rscape_v2.0.0.q/lib/hmmer/easel/testsuite/trna-ssdraw.ps rscape_v2.0.0.q/lib/hmmer/easel/testsuite/e2.sh rscape_v2.0.0.q/lib/hmmer/easel/testsuite/parse_test_results.py rscape_v2.0.0.q/lib/hmmer/easel/testsuite/i3-blank-gf.pl rscape_v2.0.0.q/lib/hmmer/easel/testsuite/i1-degen-residues.pl rscape_v2.0.0.q/lib/hmmer/easel/testsuite/valgrind_report.pl rscape_v2.0.0.q/lib/hmmer/easel/testsuite/testsuite.sqc rscape_v2.0.0.q/lib/hmmer/easel/testsuite/trna-5.stk rscape_v2.0.0.q/lib/hmmer/easel/testsuite/Makefile.in rscape_v2.0.0.q/lib/hmmer/easel/testsuite/coverage_report.pl rscape_v2.0.0.q/lib/hmmer/easel/demotic/fasta2profmark rscape_v2.0.0.q/lib/hmmer/easel/demotic/blast2tbl rscape_v2.0.0.q/lib/hmmer/easel/demotic/demotic_infernal_tab.pm rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/ rscape_v2.0.0.q/lib/hmmer/easel/demotic/demotic_blast.pm rscape_v2.0.0.q/lib/hmmer/easel/demotic/00README rscape_v2.0.0.q/lib/hmmer/easel/demotic/test.pl rscape_v2.0.0.q/lib/hmmer/easel/demotic/demotic_fasta.pm rscape_v2.0.0.q/lib/hmmer/easel/demotic/hmmer2profmark rscape_v2.0.0.q/lib/hmmer/easel/demotic/infernal_tab2gff.pl rscape_v2.0.0.q/lib/hmmer/easel/demotic/demotic_hmmer.pm rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/ rscape_v2.0.0.q/lib/hmmer/easel/demotic/blast2profmark rscape_v2.0.0.q/lib/hmmer/easel/demotic/h22tbl rscape_v2.0.0.q/lib/hmmer/easel/demotic/fasta2tbl rscape_v2.0.0.q/lib/hmmer/easel/demotic/h22profmark rscape_v2.0.0.q/lib/hmmer/easel/demotic/demotic_h2.pm rscape_v2.0.0.q/lib/hmmer/easel/demotic/hmmer2tbl rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example-single.fa.pin rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example-single-psiquery.fa rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example-single.pbl rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.hmm rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.hmmsearch.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example-single.fa.psq rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.fa rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.ssearch.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example-single.fa rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.sto rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.hmm2 rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example-single.asnt rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.psiblast.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example-single.sto rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.wu-blastp.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.fasta.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.h2.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.phmmer.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example-single.fa.phr rscape_v2.0.0.q/lib/hmmer/easel/demotic/examples/example.ncbi-blastp.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/ssearch-profmark.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/hmmsearch-tbl.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/psiblast-profmark.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/h2-tbl.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/ncbi-blastp-tbl.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/wu-blastp-profmark.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/ncbi-blastp-profmark.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/wu-blastp-tbl.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/fasta-profmark.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/h2-profmark.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/fasta-tbl.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/phmmer-profmark.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/phmmer-tbl.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/ssearch-tbl.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/hmmsearch-profmark.out rscape_v2.0.0.q/lib/hmmer/easel/demotic/regress/psiblast-tbl.out rscape_v2.0.0.q/lib/hmmer/easel/formats/fasta.bad.1 rscape_v2.0.0.q/lib/hmmer/easel/formats/wag.dat rscape_v2.0.0.q/lib/hmmer/easel/formats/BLOSUM62 rscape_v2.0.0.q/lib/hmmer/easel/formats/fasta rscape_v2.0.0.q/lib/hmmer/easel/formats/fasta.2 rscape_v2.0.0.q/lib/hmmer/easel/formats/fasta.bad.2 rscape_v2.0.0.q/lib/hmmer/easel/formats/genbank.2 rscape_v2.0.0.q/lib/hmmer/easel/formats/fasta.bad.3 rscape_v2.0.0.q/lib/hmmer/easel/formats/embl rscape_v2.0.0.q/lib/hmmer/easel/formats/uniprot rscape_v2.0.0.q/lib/hmmer/easel/formats/genbank rscape_v2.0.0.q/lib/hmmer/easel/formats/stockholm.1 rscape_v2.0.0.q/lib/hmmer/easel/formats/genbank.bad.1 rscape_v2.0.0.q/lib/hmmer/easel/formats/fasta.odd.1 rscape_v2.0.0.q/lib/hmmer/easel/documentation/copyright.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/intro.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/format_stockholm.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/typography.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/format_ncbi.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/macros.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/doctricks.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/install.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/main.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/format_wuss.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/format_a2m.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/ rscape_v2.0.0.q/lib/hmmer/easel/documentation/codestyle.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/titlepage.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/Makefile.in rscape_v2.0.0.q/lib/hmmer/easel/documentation/installation.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/statistics.tex rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rnaseP-bsu-alignment.pdf rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rna_elements.pdf rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/evd_basic.pdf rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rna_elements.ai rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rnaseP-bsu-alignment.ai rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/evd_location.pdf rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/gev_density.pdf rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rnaseP-ecoli.pdf rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rnaseP-ecoli.eps rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rnaseP-ecoli.ai rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rnaseP-bsu-alignment.eps rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/evd_scale.pdf rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/gev_logdensity.pdf rscape_v2.0.0.q/lib/hmmer/easel/documentation/figures/rna_elements.eps rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-seqstat.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimask.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimanip.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimanip.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-compalign.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-shuffle.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-mask.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-shuffle.itest.py rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimap.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alistat.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-translate.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-shuffle.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alistat.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-mask.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-reformat.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-histplot.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alirev.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimerge.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-reformat.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-seqrange.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-seqstat.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-shuffle.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-translate.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-seqrange.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-compstruct.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimap.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimap.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-translate.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-afetch.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimerge.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-compalign.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-construct.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-ssdraw.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimask.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimanip.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-mask.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-weight.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alipid.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimask.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-weight.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-ssdraw.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-seqrange.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-histplot.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-construct.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-afetch.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alimerge.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-ssdraw.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-selectn.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alipid.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-selectn.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-construct.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alirev.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-afetch.itest.pl rscape_v2.0.0.q/lib/hmmer/easel/miniapps/Makefile.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-sfetch.c rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-alistat.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-compalign.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-sfetch.man.in rscape_v2.0.0.q/lib/hmmer/easel/miniapps/esl-compstruct.man.in rscape_v2.0.0.q/lib/hmmer/profmark/x-h2-ls rscape_v2.0.0.q/lib/hmmer/profmark/x-psiblast+ rscape_v2.0.0.q/lib/hmmer/profmark/x-h2-fs rscape_v2.0.0.q/lib/hmmer/profmark/rocplot.o rscape_v2.0.0.q/lib/hmmer/profmark/x-single-ssearch rscape_v2.0.0.q/lib/hmmer/profmark/pmark-master.pl rscape_v2.0.0.q/lib/hmmer/profmark/create-profmark.o rscape_v2.0.0.q/lib/hmmer/profmark/x-iterate-psiblast rscape_v2.0.0.q/lib/hmmer/profmark/Makefile rscape_v2.0.0.q/lib/hmmer/profmark/x-fps-fasta rscape_v2.0.0.q/lib/hmmer/profmark/00README rscape_v2.0.0.q/lib/hmmer/profmark/create-profmark rscape_v2.0.0.q/lib/hmmer/profmark/x-fps-ssearch rscape_v2.0.0.q/lib/hmmer/profmark/x-phmmer-consensus rscape_v2.0.0.q/lib/hmmer/profmark/rocplot.pl rscape_v2.0.0.q/lib/hmmer/profmark/x-single-phmmer rscape_v2.0.0.q/lib/hmmer/profmark/x-fps-ncbiblast+ rscape_v2.0.0.q/lib/hmmer/profmark/x-hmmsearch rscape_v2.0.0.q/lib/hmmer/profmark/x-sam rscape_v2.0.0.q/lib/hmmer/profmark/x-iterate-jackhmmer rscape_v2.0.0.q/lib/hmmer/profmark/rocplot.c rscape_v2.0.0.q/lib/hmmer/profmark/pmark.param rscape_v2.0.0.q/lib/hmmer/profmark/x-fps-wublast rscape_v2.0.0.q/lib/hmmer/profmark/create-profmark.c rscape_v2.0.0.q/lib/hmmer/profmark/x-hmmsearch-max rscape_v2.0.0.q/lib/hmmer/profmark/x-fps-ncbiblast rscape_v2.0.0.q/lib/hmmer/profmark/x-fps-phmmer rscape_v2.0.0.q/lib/hmmer/profmark/rocplot rscape_v2.0.0.q/lib/hmmer/profmark/Makefile.in rscape_v2.0.0.q/lib/hmmer/profmark/x-single-ncbiblast rscape_v2.0.0.q/lib/hmmer/profmark/x-psiblast rscape_v2.0.0.q/lib/hmmer/autobuild/intel-linux-gcc-ubuntu32 rscape_v2.0.0.q/lib/hmmer/autobuild/autobuild.pl rscape_v2.0.0.q/lib/hmmer/autobuild/intel-macosx-gcc rscape_v2.0.0.q/lib/hmmer/autobuild/00README rscape_v2.0.0.q/lib/hmmer/autobuild/intel-linux-icc-ia32-mpi rscape_v2.0.0.q/lib/hmmer/autobuild/intel-macosx-gcc-debug rscape_v2.0.0.q/lib/hmmer/autobuild/ppc-macosx rscape_v2.0.0.q/lib/hmmer/autobuild/hmmer_autobuilds.pl rscape_v2.0.0.q/lib/hmmer/autobuild/intel-linux-icc-intel64-mpi rscape_v2.0.0.q/lib/hmmer/autobuild/ppc-aix-xlc rscape_v2.0.0.q/lib/hmmer/autobuild/intel-linux-gcc rscape_v2.0.0.q/lib/hmmer/contrib/p7_thermo.h rscape_v2.0.0.q/lib/hmmer/contrib/p7_thermo.c rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.2.1 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.1rc1 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.0b1 rscape_v2.0.0.q/lib/hmmer/release-notes/LICENSE.sh rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.0 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.0rc1 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.1 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.3.2 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.1.1 rscape_v2.0.0.q/lib/hmmer/release-notes/00CHECKLIST rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.3.3 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.1b2 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-1.7 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-1.6 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-1.8 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.2 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-1.8.3 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-1.8.4 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.0b3 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.0a2 rscape_v2.0.0.q/lib/hmmer/release-notes/ANNOUNCE-1.8 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.0b2 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.3 rscape_v2.0.0.q/lib/hmmer/release-notes/HISTORY rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.2 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.0rc2 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.3.1 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.1.2 rscape_v2.0.0.q/lib/hmmer/release-notes/ANNOUNCE-2.1 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.1b1 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-2.1.3 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-3.0 rscape_v2.0.0.q/lib/hmmer/release-notes/RELEASE-1.5 rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.afa rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.phr rscape_v2.0.0.q/lib/hmmer/testsuite/RRM_1.sto rscape_v2.0.0.q/lib/hmmer/testsuite/3box-alitest.nhr rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.sto rscape_v2.0.0.q/lib/hmmer/testsuite/i15-hmmconvert.pl rscape_v2.0.0.q/lib/hmmer/testsuite/i19-hmmpgmd-ga.pl rscape_v2.0.0.q/lib/hmmer/testsuite/2OG-FeII_Oxy_3.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.psi rscape_v2.0.0.q/lib/hmmer/testsuite/RRM_1.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/h3.pm rscape_v2.0.0.q/lib/hmmer/testsuite/3box-alitest.fa rscape_v2.0.0.q/lib/hmmer/testsuite/3box-alitest.nsi rscape_v2.0.0.q/lib/hmmer/testsuite/Makefile rscape_v2.0.0.q/lib/hmmer/testsuite/XYPPX.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/i8-nonresidues.pl rscape_v2.0.0.q/lib/hmmer/testsuite/i7-hmmbuild-fragments.pl rscape_v2.0.0.q/lib/hmmer/testsuite/i11-hmmalign-mapali.pl rscape_v2.0.0.q/lib/hmmer/testsuite/i21-rewind.pl rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.pog rscape_v2.0.0.q/lib/hmmer/testsuite/i12-delete-corruption.pl rscape_v2.0.0.q/lib/hmmer/testsuite/XYPPX.sto rscape_v2.0.0.q/lib/hmmer/testsuite/3box-alitest.nog rscape_v2.0.0.q/lib/hmmer/testsuite/i2-search-variation.sh rscape_v2.0.0.q/lib/hmmer/testsuite/ecori.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/i18-nhmmer-generic.pl rscape_v2.0.0.q/lib/hmmer/testsuite/ecori.fa rscape_v2.0.0.q/lib/hmmer/testsuite/20aa.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/parse_test_results.py rscape_v2.0.0.q/lib/hmmer/testsuite/3box.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/M1.sto rscape_v2.0.0.q/lib/hmmer/testsuite/i14-hmmemit-consensus.pl rscape_v2.0.0.q/lib/hmmer/testsuite/2OG-FeII_Oxy_3-nt.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/PSE.sto rscape_v2.0.0.q/lib/hmmer/testsuite/minifam rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.psd rscape_v2.0.0.q/lib/hmmer/testsuite/PSE.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/rndseq400-10.fa rscape_v2.0.0.q/lib/hmmer/testsuite/M1.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.psq rscape_v2.0.0.q/lib/hmmer/testsuite/testsuite.sqc rscape_v2.0.0.q/lib/hmmer/testsuite/3box-alitest.nsd rscape_v2.0.0.q/lib/hmmer/testsuite/3box.sto rscape_v2.0.0.q/lib/hmmer/testsuite/20aa.sto rscape_v2.0.0.q/lib/hmmer/testsuite/ecori.sto rscape_v2.0.0.q/lib/hmmer/testsuite/i3-seqsearch-variation.sh rscape_v2.0.0.q/lib/hmmer/testsuite/3box-alitest.nsq rscape_v2.0.0.q/lib/hmmer/testsuite/LuxC.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/SMC_N.sto rscape_v2.0.0.q/lib/hmmer/testsuite/Caudal_act.sto rscape_v2.0.0.q/lib/hmmer/testsuite/PAX8_HUMAN rscape_v2.0.0.q/lib/hmmer/testsuite/i5-hmmbuild-naming.pl rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.fa rscape_v2.0.0.q/lib/hmmer/testsuite/i17-stdin.pl rscape_v2.0.0.q/lib/hmmer/testsuite/Patched.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/i1-build-variation.sh rscape_v2.0.0.q/lib/hmmer/testsuite/Patched.sto rscape_v2.0.0.q/lib/hmmer/testsuite/Makefile.in rscape_v2.0.0.q/lib/hmmer/testsuite/i4-zerolength-seqs.sh rscape_v2.0.0.q/lib/hmmer/testsuite/Caudal_act.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/i10-duplicate-names.pl rscape_v2.0.0.q/lib/hmmer/testsuite/3box-alitest.nin rscape_v2.0.0.q/lib/hmmer/testsuite/i6-hmmalign-mapali.pl rscape_v2.0.0.q/lib/hmmer/testsuite/SMC_N.hmm rscape_v2.0.0.q/lib/hmmer/testsuite/i20-fmindex-core.pl rscape_v2.0.0.q/lib/hmmer/testsuite/i9-optional-annotation.pl rscape_v2.0.0.q/lib/hmmer/testsuite/LuxC.sto rscape_v2.0.0.q/lib/hmmer/testsuite/20aa-alitest.pin rscape_v2.0.0.q/lib/hmmer/testsuite/i16-build-allins.pl rscape_v2.0.0.q/lib/hmmer/testsuite/i13-msa-integrity.pl rscape_v2.0.0.q/lib/hmmer/test-speed/x-psiblast+ rscape_v2.0.0.q/lib/hmmer/test-speed/x-ssearch rscape_v2.0.0.q/lib/hmmer/test-speed/00README rscape_v2.0.0.q/lib/hmmer/test-speed/x-hmmer2 rscape_v2.0.0.q/lib/hmmer/test-speed/x-ncbiblast+ rscape_v2.0.0.q/lib/hmmer/test-speed/speed-master.pl rscape_v2.0.0.q/lib/hmmer/test-speed/speedA-list.pl rscape_v2.0.0.q/lib/hmmer/test-speed/x-hmmsearch rscape_v2.0.0.q/lib/hmmer/test-speed/x-sam rscape_v2.0.0.q/lib/hmmer/test-speed/component-benchmark.pl rscape_v2.0.0.q/lib/hmmer/test-speed/x-ncbiblast rscape_v2.0.0.q/lib/hmmer/test-speed/x-wublast rscape_v2.0.0.q/lib/hmmer/test-speed/x-fasta rscape_v2.0.0.q/lib/hmmer/test-speed/x-psiblast rscape_v2.0.0.q/lib/hmmer/libdivsufsort/AUTHORS rscape_v2.0.0.q/lib/hmmer/libdivsufsort/divsufsort.h.in rscape_v2.0.0.q/lib/hmmer/libdivsufsort/divsufsort.c rscape_v2.0.0.q/lib/hmmer/libdivsufsort/README rscape_v2.0.0.q/lib/hmmer/libdivsufsort/COPYING rscape_v2.0.0.q/lib/hmmer/libdivsufsort/VERSION rscape_v2.0.0.q/lib/hmmer/libdivsufsort/Makefile.in rscape_v2.0.0.q/lib/hmmer/tutorial/MADE1.sto rscape_v2.0.0.q/lib/hmmer/tutorial/Pkinase.hmm rscape_v2.0.0.q/lib/hmmer/tutorial/Pkinase.sto rscape_v2.0.0.q/lib/hmmer/tutorial/dna_target.fa rscape_v2.0.0.q/lib/hmmer/tutorial/MADE1.hmm rscape_v2.0.0.q/lib/hmmer/tutorial/globins45.fa rscape_v2.0.0.q/lib/hmmer/tutorial/fn3.hmm rscape_v2.0.0.q/lib/hmmer/tutorial/fn3.sto rscape_v2.0.0.q/lib/hmmer/tutorial/globins4.sto rscape_v2.0.0.q/lib/hmmer/tutorial/globins4.hmm rscape_v2.0.0.q/lib/hmmer/tutorial/7LESS_DROME rscape_v2.0.0.q/lib/hmmer/tutorial/HBB_HUMAN rscape_v2.0.0.q/lib/hmmer/documentation/man/ rscape_v2.0.0.q/lib/hmmer/documentation/Makefile rscape_v2.0.0.q/lib/hmmer/documentation/userguide/ rscape_v2.0.0.q/lib/hmmer/documentation/Makefile.in rscape_v2.0.0.q/lib/hmmer/documentation/userguide/copyright.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/tufte-common-local.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/tutorial.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/macros.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/install.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/ rscape_v2.0.0.q/lib/hmmer/documentation/userguide/Makefile rscape_v2.0.0.q/lib/hmmer/documentation/userguide/tufte-book.cls rscape_v2.0.0.q/lib/hmmer/documentation/userguide/main.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/tabular.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/copyright.tex.in rscape_v2.0.0.q/lib/hmmer/documentation/userguide/formats.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/introduction.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/tufte-common.def rscape_v2.0.0.q/lib/hmmer/documentation/userguide/unsrtnat-brief.bst rscape_v2.0.0.q/lib/hmmer/documentation/userguide/titlepage.tex.in rscape_v2.0.0.q/lib/hmmer/documentation/userguide/glossary.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/pipeline.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/distilled.bib rscape_v2.0.0.q/lib/hmmer/documentation/userguide/titlepage.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/Makefile.in rscape_v2.0.0.q/lib/hmmer/documentation/userguide/hmmbuild.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/ack.tex rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmscan-noargs.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmsearch-globins.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmalign-globins.out2 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmbuild-noargs.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/inclusions.def rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/jackhmmer-hbb-uniprot.out4 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/jackhmmer-hbb-uniprot.out3 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/nhmmer-made1.out3 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/nhmmer-made1.out4 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmpress-minifam.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/nhmmer-made1.out5 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/nhmmer-made1.out2 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/jackhmmer-hbb-uniprot.out2 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/jackhmmer-hbb-uniprot.out5 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmscan-minifam-sevenless.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmbuild-globins.out2 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/jackhmmer-hbb-uniprot.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmbuild-globins.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/nhmmer-made1.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmsearch-fn3-sevenless.out2 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmsearch-fn3-uniprot.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmalign-globins.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmsearch-fn3-sevenless.out4 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmsearch-fn3-sevenless.out3 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/jackhmmer-hbb-uniprot.out7 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmscan-minifam-sevenless.out2 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmsearch-globins.out2 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmsearch-globins.out3 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmscan-minifam-sevenless.out3 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmbuild-made1.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/jackhmmer-hbb-uniprot.out6 rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/globins4.sto rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/gen-inclusions.py rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/hmmsearch-fn3-sevenless.out rscape_v2.0.0.q/lib/hmmer/documentation/userguide/inclusions/sevenless_domains.out rscape_v2.0.0.q/lib/hmmer/documentation/man/nhmmscan.man rscape_v2.0.0.q/lib/hmmer/documentation/man/nhmmscan.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/phmmer.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/makehmmerdb.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmpress.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmsearch.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmconvert.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmstat.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmscan.man rscape_v2.0.0.q/lib/hmmer/documentation/man/Makefile rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmalign.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmpgmd.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/alimask.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmstat.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmlogo.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmpgmd.man rscape_v2.0.0.q/lib/hmmer/documentation/man/makehmmerdb.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmfetch.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmconvert.man rscape_v2.0.0.q/lib/hmmer/documentation/man/alimask.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmer.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmalign.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmpress.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/jackhmmer.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmemit.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmfetch.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/nhmmer.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmsearch.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmer.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/nhmmer.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmsim.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmlogo.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/jackhmmer.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmbuild.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmemit.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/Makefile.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmsim.man rscape_v2.0.0.q/lib/hmmer/documentation/man/phmmer.man rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmscan.man.in rscape_v2.0.0.q/lib/hmmer/documentation/man/hmmbuild.man rscape_v2.0.0.q/lib/R-view/scripts/ rscape_v2.0.0.q/lib/R-view/src/ rscape_v2.0.0.q/lib/R-view/src/rview_config.h rscape_v2.0.0.q/lib/R-view/src/rview_pdbfile.c rscape_v2.0.0.q/lib/R-view/src/rview_cmap.h rscape_v2.0.0.q/lib/R-view/src/rview_matrix.h rscape_v2.0.0.q/lib/R-view/src/rview_contacts.h rscape_v2.0.0.q/lib/R-view/src/rview_config.h.in rscape_v2.0.0.q/lib/R-view/src/R-view.c rscape_v2.0.0.q/lib/R-view/src/rview_cmap.c rscape_v2.0.0.q/lib/R-view/src/rview_pdbfile.h rscape_v2.0.0.q/lib/R-view/src/rview_matrix.c rscape_v2.0.0.q/lib/R-view/src/Makefile.in rscape_v2.0.0.q/lib/R-view/src/rview_contacts.c rscape_v2.0.0.q/lib/R-view/scripts/rview_test.pl rscape_v2.0.0.q/lib/RNAVIEW/._.DS_Store rscape_v2.0.0.q/lib/RNAVIEW/.DS_Store rscape_v2.0.0.q/lib/RNAVIEW/._test rscape_v2.0.0.q/lib/RNAVIEW/test/ rscape_v2.0.0.q/lib/RNAVIEW/._BASEPARS rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/ rscape_v2.0.0.q/lib/RNAVIEW/00README rscape_v2.0.0.q/lib/RNAVIEW/README rscape_v2.0.0.q/lib/RNAVIEW/._rnaml2ps rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/ rscape_v2.0.0.q/lib/RNAVIEW/._src rscape_v2.0.0.q/lib/RNAVIEW/src/ rscape_v2.0.0.q/lib/RNAVIEW/src/ps-xy.c rscape_v2.0.0.q/lib/RNAVIEW/src/ps-xy-sub.c rscape_v2.0.0.q/lib/RNAVIEW/src/nrutil.c rscape_v2.0.0.q/lib/RNAVIEW/src/statistics.c rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview_config.h rscape_v2.0.0.q/lib/RNAVIEW/src/xml2ps.c rscape_v2.0.0.q/lib/RNAVIEW/src/pair_type.c rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview.dSYM/ rscape_v2.0.0.q/lib/RNAVIEW/src/erfiles.c rscape_v2.0.0.q/lib/RNAVIEW/src/vrml.h rscape_v2.0.0.q/lib/RNAVIEW/src/fpair_sub.c rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview.c rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview_config.h.in rscape_v2.0.0.q/lib/RNAVIEW/src/rnaxml-new.c rscape_v2.0.0.q/lib/RNAVIEW/src/nrutil.h rscape_v2.0.0.q/lib/RNAVIEW/src/analyze.c rscape_v2.0.0.q/lib/RNAVIEW/src/rna_header.h rscape_v2.0.0.q/lib/RNAVIEW/src/xml2ps.h rscape_v2.0.0.q/lib/RNAVIEW/src/fpair.c rscape_v2.0.0.q/lib/RNAVIEW/src/multiple.c rscape_v2.0.0.q/lib/RNAVIEW/src/Makefile.in rscape_v2.0.0.q/lib/RNAVIEW/src/vrml.c rscape_v2.0.0.q/lib/RNAVIEW/src/pattern.c rscape_v2.0.0.q/lib/RNAVIEW/src/erfiles.h rscape_v2.0.0.q/lib/RNAVIEW/src/rna.h rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview.dSYM/Contents/ rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview.dSYM/Contents/Resources/ rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview.dSYM/Contents/Info.plist rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview.dSYM/Contents/Resources/DWARF/ rscape_v2.0.0.q/lib/RNAVIEW/src/rnaview.dSYM/Contents/Resources/DWARF/rnaview rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/._ps_image.par rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/ps_image.par rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/._nrutil.c rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/nrutil.c rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/._Makefile rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/Makefile rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/._rnaml2ps.c rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/rnaml2ps.c rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/._nrutil.h rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/nrutil.h rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/._rnaml2ps rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/rnaml2ps rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/._xml2ps.h rscape_v2.0.0.q/lib/RNAVIEW/rnaml2ps/xml2ps.h rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._ps_image.par rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/ps_image.par rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._Atomic_I.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/Atomic_I.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._misc_rna.par rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/misc_rna.par rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._raster3d.par rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/raster3d.par rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._vrml_image.par rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/vrml_image.par rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._Atomic_G.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/Atomic_G.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._Atomic_P.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/Atomic_P.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._Atomic_C.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/Atomic_C.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._Atomic_T.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/Atomic_T.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._Atomic_U.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/Atomic_U.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/._Atomic_A.pdb rscape_v2.0.0.q/lib/RNAVIEW/BASEPARS/Atomic_A.pdb rscape_v2.0.0.q/lib/RNAVIEW/test/._tr0001.pdb.out rscape_v2.0.0.q/lib/RNAVIEW/test/tr0001.pdb.out rscape_v2.0.0.q/lib/RNAVIEW/test/._test.pdb.xml rscape_v2.0.0.q/lib/RNAVIEW/test/test.pdb.xml rscape_v2.0.0.q/lib/RNAVIEW/test/._tr0001.pdb rscape_v2.0.0.q/lib/RNAVIEW/test/tr0001.pdb rscape_v2.0.0.q/lib/RNAVIEW/test/._tr0001.pdb.ps rscape_v2.0.0.q/lib/RNAVIEW/test/tr0001.pdb.ps rscape_v2.0.0.q/lib/RNAVIEW/test/._test.pdb.xml.ps rscape_v2.0.0.q/lib/RNAVIEW/test/test.pdb.xml.ps rscape_v2.0.0.q/lib/RNAVIEW/test/._tr0001.pdb.xml rscape_v2.0.0.q/lib/RNAVIEW/test/tr0001.pdb.xml rscape_v2.0.0.q/lib/RNAVIEW/test/._test.pdb.out rscape_v2.0.0.q/lib/RNAVIEW/test/test.pdb.out rscape_v2.0.0.q/lib/RNAVIEW/test/._test.pdb.ps rscape_v2.0.0.q/lib/RNAVIEW/test/test.pdb.ps rscape_v2.0.0.q/lib/RNAVIEW/test/._url064.pdb rscape_v2.0.0.q/lib/RNAVIEW/test/url064.pdb rscape_v2.0.0.q/lib/RNAVIEW/test/._urx053.pdb rscape_v2.0.0.q/lib/RNAVIEW/test/urx053.pdb rscape_v2.0.0.q/lib/RNAVIEW/test/url064.pdb.xml rscape_v2.0.0.q/lib/RNAVIEW/test/._tr0001.pdb.wrl rscape_v2.0.0.q/lib/RNAVIEW/test/tr0001.pdb.wrl rscape_v2.0.0.q/lib/RNAVIEW/test/test.pdb..out rscape_v2.0.0.q/lib/RNAVIEW/test/._base_pair_statistics.out rscape_v2.0.0.q/lib/RNAVIEW/test/base_pair_statistics.out rscape_v2.0.0.q/lib/RNAVIEW/test/._tr0001.pdb.xml.ps rscape_v2.0.0.q/lib/RNAVIEW/test/tr0001.pdb.xml.ps rscape_v2.0.0.q/lib/RNAVIEW/test/url064.pdb.ps rscape_v2.0.0.q/lib/RNAVIEW/test/url064.pdb.out rscape_v2.0.0.q/lib/RNAVIEW/test/._test1.pdb rscape_v2.0.0.q/lib/RNAVIEW/test/test1.pdb rscape_v2.0.0.q/lib/infernal/infernal-current/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confTTRDaM/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confrefDO0/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/install-sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/configure.ac rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confosnXfs/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/INSTALL rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/LICENSE rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confxSpYvT/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/configure rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confJ2QSDZ/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confIBsNlI/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confKzKWbD/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/config.guess rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confuMFkO1/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/RELEASE-NOTES rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confRXCCZM/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/README rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confe4o1QQ/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/Userguide.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/config.sub rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confG6gSBG/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf9hEQb9/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confk7Z4qU/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confFXsi42/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confVRJCB2/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf5Hb4xz/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confflgA5I/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf5SXiaW/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confLLeSGy/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/aclocal.m4 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/itest_brute.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/Rfam.12.1.claninfo rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/rna.null rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_qdband.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/alphabet.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_pipeline.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_submodel.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_alndata.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/prior.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/display.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/default.prior rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cp9-test.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cp9_trace.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_tophits.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/bandcyk-montecarlo-test.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_parsetree.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_modelmaker.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cp9.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_dpsearch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/rnamat.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmsim.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_dpsmall.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmsearch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/infernal.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_file.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmfetch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/nearzero.prior rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cp9_modelmaker.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/v056-to-v102-default.prior rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cp9_mx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/config.h.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/hmmband.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cp9_dp.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/stats.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmstat.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_mx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/prior.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_p7_domaindef.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_modelconfig.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_p7_band.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/truncyk_check.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/logsum.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_dpalign_trunc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_dpsearch_trunc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/plus1.prior rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmconvert.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_p7_modelmaker.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/mpisupport.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmalign.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/trcyk.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/rnamat.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmscan.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/truncyk.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_dpalign.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/sa-Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/sub_cm-test.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/stats.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/eweight.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_trunc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmbuild.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmpress.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/bandcyk-truncation-test.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_dispatch.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_p7_modelconfig_trunc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmcalibrate.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/hmmband.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cm_alidisplay.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/errors.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/cmemit.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/cmsearch_dual rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/sse_cmsearch rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/sse_cmcons_mscyk.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/cm_optimized.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/sse_cmcons_hitmx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/impl_sse.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/sse_cm_dpsearch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/sse_cm_dpsmall.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/sse_cmsearch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/src/impl_sse/sse_util.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-25.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-25.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-25.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-25.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-25.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-25.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM100-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-25.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-95.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-25.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-90.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM45-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM70-35.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-85.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM55-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM60-30.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-80.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-55.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-50.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-65.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM80-70.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM90-75.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM95-45.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/matrices/RIBOSUM85-40.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-idpositives.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/x-rfamscan rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/x-cmsearch rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-multiply-evalues.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-pp.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-hitlist.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/00README rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-create.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-po-pp.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-Rroc.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/x-nhmmer2cmsearch rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-mer.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/x-blastn rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-time.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/x-nhmmer rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark3-bg.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/x-blastall rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/x-wublast rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-rocplot.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/rmark/rmark-master.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confLLeSGy/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confLLeSGy/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confLLeSGy/config.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confLLeSGy/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf5SXiaW/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf5SXiaW/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf5SXiaW/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confflgA5I/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confflgA5I/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confflgA5I/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sse.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_regexp.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_exponential.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msashuffle.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_alphabet.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_random.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_stockholm.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_a2m.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_recorder.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gev.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_vmx.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_cluster.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_ssi.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_heap.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_hyperexp.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_mpi.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_wuss.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dmatrix.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_keyhash.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sq.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_mem.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stretchexp.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_getopts.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dsqdata.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/install-sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/configure.ac rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_regexp.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dirichlet.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sqio.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_randomseq.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_randomseq.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stopwatch.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/INSTALL rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_fileparser.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/interface_gsl.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_hmm.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_swat.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stopwatch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_mpi.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/LICENSE rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gencode.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/LICENSE.sh.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stats.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_scorematrix.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/easel.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/configure rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_distance.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_histogram.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_composition.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gev.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_tree.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_weibull.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_paml.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_phylip.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_workqueue.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile2.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_tree.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_buffer.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sqio_ascii.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_hyperexp.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_weibull.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_vectorops.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_ratematrix.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msaweight.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_rootfinder.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sqio_ncbi.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_normal.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_mixgev.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_alphabet.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/00README rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_psiblast.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_selex.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msacluster.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_threads.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_minimizer.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dsqdata.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_swat.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_normal.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/interface_lapack.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_wuss.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gamma.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_cluster.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/config.guess rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gumbel.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_clustal.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dmatrix.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sqio.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stack.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_afa.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_histogram.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_config.h.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_buffer.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_scorematrix.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_random.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_vectorops.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_avx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sse.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dirichlet.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_regexp.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stretchexp.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sq.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_mem.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_keyhash.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_getopts.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_ssi.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/config.sub rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_keyhash.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_vmx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_recorder.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_stockholm.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_a2m.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gamma.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_heap.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_ssi.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_cluster.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sse.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_getopts.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_random.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_alphabet.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msashuffle.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_exponential.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_distance.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_paml.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_weibull.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_distance.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gev.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gumbel.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_composition.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_histogram.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_scorematrix.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_ratematrix.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stats.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gencode.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/easel.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/interface_gsl.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_mpi.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stopwatch.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_hmm.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_rootfinder.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sq.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sqio.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_randomseq.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_fileparser.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/makeTAGS.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_mixgev.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stretchexp.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stack.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dirichlet.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msaweight.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sqio_ncbi.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_rootfinder.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_ratematrix.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msaweight.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msacluster.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_sqio_ascii.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_vectorops.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_fileparser.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_hyperexp.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_exponential.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_workqueue.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_paml.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_phylip.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_tree.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile2.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stats.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_buffer.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/easel.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_avx.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/aclocal.m4 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dmatrix.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_clustal.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gumbel.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_afa.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_stack.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/interface_lapack.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_normal.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/BUGTRAX rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_minimizer.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_wuss.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_gamma.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_psiblast.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile.md rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_dsqdata.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_threads.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_minimizer.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msacluster.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msafile_selex.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/a2m/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/psiblast/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/afa/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/clustal/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylips/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.bad.6 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.bad.8 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.bad.7 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.bad.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.bad.5 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.good.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.bad.4 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/stockholm/stockholm.bad.3 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylips/phylips.good.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylips/phylips.good.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/clustal/clustal.good.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/clustal/clustal.good.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/afa/afa.good.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/afa/afa.good.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/afa/afa.good.3 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/psiblast/psiblast.good.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/psiblast/psiblast.good.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/a2m/a2m.good.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/a2m/a2m.good.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.12 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.13 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.14 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.9 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.7 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.6 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.good.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.8 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.11 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.10 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.good.4 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.4 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.good.3 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.3 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.good.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/selex.bad.5 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/selex/00MANIFEST rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.11 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.10 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.good.3 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.4 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.3 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.good.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.5 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.ambig.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.9 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.7 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.6 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.bad.8 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/esl_msa_testfiles/phylip/phylip.good.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/esl-dependencies rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/ctags-fix rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/cexcerpt.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/autodoc rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/man2optlist rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/sedition-pp rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/00README rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/rmanprocess.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/cexcerpt rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/c2optlist rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/sqc rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/devkit/sedition rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/i2-ncbi-indices.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/trna-ssdraw.ps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/e2.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/i3-blank-gf.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/i1-degen-residues.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/valgrind_report.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/testsuite.sqc rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/trna-5.stk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/testsuite/coverage_report.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/fasta2profmark rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/blast2tbl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/demotic_infernal_tab.pm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/demotic_blast.pm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/00README rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/test.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/demotic_fasta.pm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/hmmer2profmark rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/infernal_tab2gff.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/demotic_hmmer.pm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/blast2profmark rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/h22tbl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/fasta2tbl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/h22profmark rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/demotic_h2.pm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/hmmer2tbl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example-single.fa.pin rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example-single-psiquery.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example-single.pbl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.hmmsearch.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example-single.fa.psq rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.ssearch.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example-single.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.hmm2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example-single.asnt rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.psiblast.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example-single.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.wu-blastp.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.fasta.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.h2.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.phmmer.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example-single.fa.phr rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/examples/example.ncbi-blastp.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/ssearch-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/hmmsearch-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/psiblast-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/h2-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/ncbi-blastp-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/wu-blastp-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/ncbi-blastp-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/wu-blastp-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/fasta-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/h2-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/fasta-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/phmmer-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/phmmer-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/ssearch-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/hmmsearch-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/demotic/regress/psiblast-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/fasta.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/wag.dat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/BLOSUM62 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/fasta rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/fasta.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/fasta.bad.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/genbank.2 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/fasta.bad.3 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/embl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/uniprot rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/genbank rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/stockholm.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/genbank.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/formats/fasta.odd.1 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/copyright.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/intro.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/format_stockholm.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/typography.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/format_ncbi.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/macros.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/doctricks.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/install.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/main.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/format_wuss.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/format_a2m.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/codestyle.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/titlepage.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/installation.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/statistics.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rnaseP-bsu-alignment.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rna_elements.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/evd_basic.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rna_elements.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rnaseP-bsu-alignment.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/evd_location.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/gev_density.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rnaseP-ecoli.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rnaseP-ecoli.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rnaseP-ecoli.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rnaseP-bsu-alignment.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/evd_scale.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/gev_logdensity.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/documentation/figures/rna_elements.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-seqstat.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimask.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimanip.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimanip.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-shuffle.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-compalign.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-shuffle.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-histplot.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alipid.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimap.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alistat.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alirev.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-ssdraw.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-translate.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-seqrange.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimerge.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alistat.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-mask.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-reformat.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-histplot.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alirev.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimerge.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-seqrange.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-translate.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-shuffle.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-translate.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-compstruct.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimap.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimerge.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-compalign.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-construct.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-weight.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-ssdraw.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimask.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-construct.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-mask.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-sfetch.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alipid.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimask.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-seqstat.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-weight.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimap.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-selectn.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-seqrange.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-compalign.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-compstruct.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-cluster.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-construct.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-afetch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alistat.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-ssdraw.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-selectn.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-reformat.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-afetch.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-afetch.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-sfetch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-mask.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimanip.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf5Hb4xz/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf5Hb4xz/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf5Hb4xz/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confVRJCB2/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confVRJCB2/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confVRJCB2/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confFXsi42/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confFXsi42/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confFXsi42/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confk7Z4qU/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confk7Z4qU/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confk7Z4qU/config.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confk7Z4qU/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf9hEQb9/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf9hEQb9/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/conf9hEQb9/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confG6gSBG/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confG6gSBG/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confG6gSBG/config.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confG6gSBG/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/install-sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/configure.ac rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/INSTALL rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/libdivsufsort/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/LICENSE rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/configure rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/config.guess rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/README.md rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/config.sub rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/makeTAGS.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/aclocal.m4 rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/itest_brute.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_gmx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmdutils.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmpgmd_client_example.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_tophits.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_fwdback_banded.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmscan.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/modelconfig.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_gmxchk.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_null2.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_alidisplay.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/evalues.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmemit.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_gbands.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_hmmcache.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/emit.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_gmxb.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmpress.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmbuild.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/cachedb.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/alimask.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/nhmmscan.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmpgmd.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_prior.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_scoredata.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_fwdback_chk.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/tracealign.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmpress.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_builder.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_bg.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmer.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/seqmodel.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_decoding.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmalign.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/fm_alphabet.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_viterbi.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/h2_io.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/fm_sse.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_domaindef.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_fwdback_rescaled.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_spensemble.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmdmstr.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_hmmwindow.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_hmm.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/nhmmer.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/fm_general.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmdwrkr.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_msv.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmsim.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/fm_ssv.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmlogo.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/build.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/makehmmerdb.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/jackhmmer.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_pipeline.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_optacc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/modelstats.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_config.h.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmc2.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/heatmap.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/logsum.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmstat.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_gmxchk.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/phmmer.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmsearch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/generic_vtrace.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/mpisupport.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/cachedb.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmpgmd.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_gmxb.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_null3.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_trace.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_hmmcache.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_gbands.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmerfm-exactmatch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/eweight.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmpgmd2msa.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmer.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_profile.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmconvert.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/errors.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/hmmfetch.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/p7_hmmfile.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/p7_oprofile.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/optacc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/vitscore.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/io.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/decoding.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/msvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/impl_dummy.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/p7_omx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/null2.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/vitfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_dummy/mpi.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/p7_oprofile.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/optacc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/vitscore.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/io.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/decoding.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/msvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/impl_vmx.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/p7_omx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/null2.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/vitfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/00MANIFEST rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_vmx/mpi.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/p7_oprofile.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/optacc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/vitscore.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/io.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/decoding.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/msvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/fbparsers.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/ssvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/impl_sse.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/p7_omx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/null2.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/p7_omx.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/vitfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/00MANIFEST rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl_sse/mpi.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/libhmmer-impl.stamp rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/p7_oprofile.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/optacc.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/msvfilter.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/decoding.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/vitscore.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/fwdback.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/io.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/ssvfilter.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/Makefile rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/stotrace.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/vitfilter.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/p7_omx.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/null2.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/mpi.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/decoding.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/optacc.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/msvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/fbparsers.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/p7_oprofile.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/io.o rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/ssvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/impl_sse.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/p7_omx.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/null2.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/p7_omx.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/vitfilter.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/00MANIFEST rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/src/impl/mpi.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-h2-ls rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-psiblast+ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-h2-fs rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-single-ssearch rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/pmark-master.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-iterate-psiblast rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-fasta rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/00README rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-ssearch rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-phmmer-consensus rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/rocplot.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-single-phmmer rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-ncbiblast+ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-hmmsearch rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-sam rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-iterate-jackhmmer rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/rocplot.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/pmark.param rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-wublast rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/create-profmark.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-hmmsearch-max rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-ncbiblast rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-phmmer rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-single-ncbiblast rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/profmark/x-psiblast rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/RRM_1.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i15-hmmconvert.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i19-hmmpgmd-ga.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/2OG-FeII_Oxy_3.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/RRM_1.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/h3.pm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/XYPPX.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i8-nonresidues.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i7-hmmbuild-fragments.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i11-hmmalign-mapali.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i12-delete-corruption.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/XYPPX.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i2-search-variation.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/ecori.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i18-nhmmer-generic.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/ecori.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/20aa.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/3box.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/M1.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i14-hmmemit-consensus.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/2OG-FeII_Oxy_3-nt.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/PSE.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/minifam rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/PSE.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/rndseq400-10.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/M1.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/testsuite.sqc rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/3box.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/20aa.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/ecori.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i3-seqsearch-variation.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/LuxC.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/SMC_N.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/Caudal_act.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/PAX8_HUMAN rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i5-hmmbuild-naming.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/20aa-alitest.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i17-stdin.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/Patched.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i1-build-variation.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/Patched.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/test-make.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i4-zerolength-seqs.sh rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/Caudal_act.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i10-duplicate-names.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i6-hmmalign-mapali.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/SMC_N.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i20-fmindex-core.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i9-optional-annotation.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/LuxC.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i16-build-allins.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/testsuite/i13-msa-integrity.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/libdivsufsort/AUTHORS rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/libdivsufsort/divsufsort.h.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/libdivsufsort/divsufsort.c rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/libdivsufsort/README rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/libdivsufsort/COPYING rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/libdivsufsort/VERSION rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/libdivsufsort/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/MADE1.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/Pkinase.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/globins4.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/Pkinase.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/dna_target.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/MADE1.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/globins45.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/minifam.h3p rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/minifam.h3m rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/fn3.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/fn3.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/minifam rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/fn3.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/MADE1.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/globins4.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/minifam.h3f rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/globins4.hmm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/7LESS_DROME rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/HBB_HUMAN rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/tutorial/minifam.h3i rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/tutorial.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/macros.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/install.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/main.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/tabular.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/copyright.tex.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/formats.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/introduction.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/titlepage.tex.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/more.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/glossary.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/pipeline.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/hmmbuild.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/userguide/ack.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/nhmmscan.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/boilerplate-tail rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmpress.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmsearch.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmstat.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmscan.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/alimask.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmlogo.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmpgmd.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/makehmmerdb.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmfetch.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmconvert.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmer.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmalign.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/jackhmmer.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmemit.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/nhmmer.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmsim.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/phmmer.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/hmmer/documentation/man/hmmbuild.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confe4o1QQ/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confe4o1QQ/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confe4o1QQ/config.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confe4o1QQ/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confRXCCZM/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confRXCCZM/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confRXCCZM/config.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confRXCCZM/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confuMFkO1/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confuMFkO1/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confuMFkO1/config.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confuMFkO1/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confKzKWbD/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confKzKWbD/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confKzKWbD/config.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confKzKWbD/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confIBsNlI/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confIBsNlI/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confIBsNlI/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confJ2QSDZ/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confJ2QSDZ/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confJ2QSDZ/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/emitted-5.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/rnaseP-frag.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tRNA.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest8-glist.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/trna.xmask rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i2.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/4.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i28.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tremitted-Vault.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/rnaseP-eubact.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i28.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/1k-snR75.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i2.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/at25.null rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/ffs-frag.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tRNA1415G.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i1.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tRNA1415G.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/se.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/10k-4.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest2-duplicate-names.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/emitted-4.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/RIBOSUM85-60.mat rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/5.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/srp-euk.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/emitted-snR75.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/4.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/se.rf.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i29.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tRNA.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest4-stdin.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/10k-Vault.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tRNA-Sec.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i43.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i14.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i30.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/4.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/snR75.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/at4.null rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest9-overlaps.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/vault.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i36.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i34.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/3trnas.embl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i43.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/4.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/100k-4.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/00README rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/trna-2.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/snR75.3.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest7-trunc.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i11.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i37.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/RNaseP.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/1k-tRNA.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tRNA.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/1k.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/test.hprior rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i44.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i33.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i15.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i31.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Plant_SRP.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Rfam.12.1.clanin rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i43.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i12.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i34.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i14.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/snR75.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i36.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/3trnas.gb rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/2accn.list rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest5-pipeline.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Vault.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Plant_SRP.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/1k-Vault.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/mito-ascaris.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Plant_SRP.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i32.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/1k-4.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/2name.list rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/se.noss.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/emitted-tRNA.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i31.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/dev_testsuite.sqc rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i33.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/se.1.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/testsuite.sqc rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i13.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i15.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/emitted-Vault.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i31.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/se.dbl.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i37.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/rnaseP-bsu.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/plus1.prior rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/srp-euk.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/2.list rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/rnaseP-eubact.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/10k-tRNA.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Vault.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tremitted-Plant_SRP.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i28.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Vault.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/5.claninfo rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/trna.list rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i38.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/PK-HAV.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest3-msa-integrity.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i15.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i29.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/mito-ascaris.gb rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Plant_SRP.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/tRNA.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest6-sensitivity.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/emitted-3pkhavs.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/i1.pm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i39.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/bug-i14.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/snR75.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/snR75.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/itest1-cmalign-mapali.pl rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/3.4.12.rf.stk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/ssu.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/Vault.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/se.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/testsuite/ffs-ecoli.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confxSpYvT/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confxSpYvT/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confxSpYvT/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confosnXfs/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confosnXfs/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confosnXfs/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/tRNA5.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/mrum-tRNAs10.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/minifam.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/minifam.cm.i1i rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/tRNA5-hand.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/minifam.cm.i1f rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/tRNA5.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/minifam-metag.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/tRNA5-mrum.out rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/Cobalamin.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/mrum-tRNAs10.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/metag-example.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/Cobalamin.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/tRNA5-noss.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/5S_rRNA.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/mrum-genome.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/minifam.cm.i1m rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/minifam.cm.i1p rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/tRNA5-hand.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/Cobalamin.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/orig_files/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/5S_rRNA.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/orig_files/toalign.1.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/orig_files/toalign.5.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/orig_files/tosearch.300Kb.db rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/orig_files/trna.5.sto rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/tutorial/orig_files/toalign.1trunc.fa rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/sse_cmsearch.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmemit.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmsearch_dual.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmpress.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/boilerplate.trailer rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/infernal.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmfetch.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmcalibrate.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmsearch.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmalign.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmstat.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmscan.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmconvert.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/cmbuild.man rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/manpages/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/copyright.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/apalike.sty rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/tutorial.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/format_prior.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/macros.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/install.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/main.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/local.bib rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/tabular.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/url.sty rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/formats.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/introduction.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/diffoptions.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/trna.5.c.cm rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/ rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/titlepage.tex.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/more.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/pipeline.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/cmbuild.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/rigfilters_doc.html rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/ack.tex rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/cm_graph.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purine3_small.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rnaseP-bsu-alignment.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rna_elements.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purine2_full.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purine3_full.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/trna1-DF6280.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/cm_graph.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rna_elements.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purineC_small.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/cm_nodetree.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/parsetrees.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purine2_small.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rnaseP-bsu-alignment.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/input_alignment.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purine.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/cm_nodetree.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rnaseP-ecoli.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/input_alignment.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/trna1-DF6280.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purine1_full.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/parsetrees.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purine1_small.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/cm_nodetree.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/input_alignment.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rnaseP-ecoli.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rnaseP-ecoli.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/parsetrees.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rnaseP-bsu-alignment.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/stl9-63.ai rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/cm_graph.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/trna1-DF6280.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/trna1-DF6280-hand.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/purineC_full.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/stl9-63.pdf rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/documentation/userguide/Figures/rna_elements.eps rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confrefDO0/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confrefDO0/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confrefDO0/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confTTRDaM/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confTTRDaM/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confTTRDaM/config.h rscape_v2.0.0.q/lib/infernal/infernal-1.1.2/confTTRDaM/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confTTRDaM/ rscape_v2.0.0.q/lib/infernal/infernal-current/confFGcaPC/ rscape_v2.0.0.q/lib/infernal/infernal-current/confnPZyuY/ rscape_v2.0.0.q/lib/infernal/infernal-current/confrefDO0/ rscape_v2.0.0.q/lib/infernal/infernal-current/confKBgUgQ/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf4xzbyp/ rscape_v2.0.0.q/lib/infernal/infernal-current/confYW7RRG/ rscape_v2.0.0.q/lib/infernal/infernal-current/confVUTNmz/ rscape_v2.0.0.q/lib/infernal/infernal-current/confvGqHgm/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf2y3ciu/ rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/ rscape_v2.0.0.q/lib/infernal/infernal-current/install-sh rscape_v2.0.0.q/lib/infernal/infernal-current/confDpbmr6/ rscape_v2.0.0.q/lib/infernal/infernal-current/configure.ac rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/ rscape_v2.0.0.q/lib/infernal/infernal-current/confosnXfs/ rscape_v2.0.0.q/lib/infernal/infernal-current/INSTALL rscape_v2.0.0.q/lib/infernal/infernal-current/confcpZFqp/ rscape_v2.0.0.q/lib/infernal/infernal-current/conff2pzNG/ rscape_v2.0.0.q/lib/infernal/infernal-current/confGnsmjD/ rscape_v2.0.0.q/lib/infernal/infernal-current/confsjUmYx/ rscape_v2.0.0.q/lib/infernal/infernal-current/confJ5xsje/ rscape_v2.0.0.q/lib/infernal/infernal-current/confghhoz8/ rscape_v2.0.0.q/lib/infernal/infernal-current/LICENSE rscape_v2.0.0.q/lib/infernal/infernal-current/conf4DFcD8/ rscape_v2.0.0.q/lib/infernal/infernal-current/confxSpYvT/ rscape_v2.0.0.q/lib/infernal/infernal-current/confJwbEav/ rscape_v2.0.0.q/lib/infernal/infernal-current/configure rscape_v2.0.0.q/lib/infernal/infernal-current/conffgmNMd/ rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o26H/ rscape_v2.0.0.q/lib/infernal/infernal-current/confTvMs5u/ rscape_v2.0.0.q/lib/infernal/infernal-current/conff3eQcn/ rscape_v2.0.0.q/lib/infernal/infernal-current/confYNqqc6/ rscape_v2.0.0.q/lib/infernal/infernal-current/confzcvnlo/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf8lyFnl/ rscape_v2.0.0.q/lib/infernal/infernal-current/confALneOC/ rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/ rscape_v2.0.0.q/lib/infernal/infernal-current/confQTABmU/ rscape_v2.0.0.q/lib/infernal/infernal-current/confJ2QSDZ/ rscape_v2.0.0.q/lib/infernal/infernal-current/confIBsNlI/ rscape_v2.0.0.q/lib/infernal/infernal-current/confCLl9xw/ rscape_v2.0.0.q/lib/infernal/infernal-current/confQX8ndt/ rscape_v2.0.0.q/lib/infernal/infernal-current/confKzKWbD/ rscape_v2.0.0.q/lib/infernal/infernal-current/confSKgbc3/ rscape_v2.0.0.q/lib/infernal/infernal-current/confsosGnD/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf1Fw1Lr/ rscape_v2.0.0.q/lib/infernal/infernal-current/confLRy7ew/ rscape_v2.0.0.q/lib/infernal/infernal-current/confSMvbeY/ rscape_v2.0.0.q/lib/infernal/infernal-current/config.guess rscape_v2.0.0.q/lib/infernal/infernal-current/confuMFkO1/ rscape_v2.0.0.q/lib/infernal/infernal-current/confRMOipF/ rscape_v2.0.0.q/lib/infernal/infernal-current/RELEASE-NOTES rscape_v2.0.0.q/lib/infernal/infernal-current/confRXCCZM/ rscape_v2.0.0.q/lib/infernal/infernal-current/README rscape_v2.0.0.q/lib/infernal/infernal-current/confe1wOuo/ rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o1QQ/ rscape_v2.0.0.q/lib/infernal/infernal-current/confnoagYa/ rscape_v2.0.0.q/lib/infernal/infernal-current/confbf64Mo/ rscape_v2.0.0.q/lib/infernal/infernal-current/Userguide.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/config.sub rscape_v2.0.0.q/lib/infernal/infernal-current/confwE21RQ/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/ rscape_v2.0.0.q/lib/infernal/infernal-current/confG6gSBG/ rscape_v2.0.0.q/lib/infernal/infernal-current/confJFG8XQ/ rscape_v2.0.0.q/lib/infernal/infernal-current/confiKs3SI/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf9hEQb9/ rscape_v2.0.0.q/lib/infernal/infernal-current/confwvOgUR/ rscape_v2.0.0.q/lib/infernal/infernal-current/confk7Z4qU/ rscape_v2.0.0.q/lib/infernal/infernal-current/confohrnvD/ rscape_v2.0.0.q/lib/infernal/infernal-current/confFXsi42/ rscape_v2.0.0.q/lib/infernal/infernal-current/confSvHFBn/ rscape_v2.0.0.q/lib/infernal/infernal-current/confHrb3Ry/ rscape_v2.0.0.q/lib/infernal/infernal-current/confVRJCB2/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf5I9EzV/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf5Hb4xz/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/ rscape_v2.0.0.q/lib/infernal/infernal-current/confflgA5I/ rscape_v2.0.0.q/lib/infernal/infernal-current/confQljyC6/ rscape_v2.0.0.q/lib/infernal/infernal-current/confuFKP4P/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf5SXiaW/ rscape_v2.0.0.q/lib/infernal/infernal-current/conffcM8CW/ rscape_v2.0.0.q/lib/infernal/infernal-current/confnTBfs4/ rscape_v2.0.0.q/lib/infernal/infernal-current/confmZnGOb/ rscape_v2.0.0.q/lib/infernal/infernal-current/conf3CfqHu/ rscape_v2.0.0.q/lib/infernal/infernal-current/confLLeSGy/ rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/ rscape_v2.0.0.q/lib/infernal/infernal-current/confxsZloR/ rscape_v2.0.0.q/lib/infernal/infernal-current/confynug3i/ rscape_v2.0.0.q/lib/infernal/infernal-current/confJNecFq/ rscape_v2.0.0.q/lib/infernal/infernal-current/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/conf8QXony/ rscape_v2.0.0.q/lib/infernal/infernal-current/aclocal.m4 rscape_v2.0.0.q/lib/infernal/infernal-current/conf6RxA7D/ rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/ rscape_v2.0.0.q/lib/infernal/infernal-current/confCwv4Kj/ rscape_v2.0.0.q/lib/infernal/infernal-current/confEtwbWz/ rscape_v2.0.0.q/lib/infernal/infernal-current/src/ rscape_v2.0.0.q/lib/infernal/infernal-current/src/itest_brute.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/Rfam.12.1.claninfo rscape_v2.0.0.q/lib/infernal/infernal-current/src/rna.null rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_qdband.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/alphabet.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_pipeline.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_submodel.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_alndata.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/prior.h rscape_v2.0.0.q/lib/infernal/infernal-current/src/display.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/default.prior rscape_v2.0.0.q/lib/infernal/infernal-current/src/cp9-test.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cp9_trace.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_tophits.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/bandcyk-montecarlo-test.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_parsetree.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_modelmaker.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cp9.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/ rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_dpsearch.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/rnamat.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmsim.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_dpsmall.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmsearch.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/infernal.h rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_file.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmfetch.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/nearzero.prior rscape_v2.0.0.q/lib/infernal/infernal-current/src/cp9_modelmaker.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/v056-to-v102-default.prior rscape_v2.0.0.q/lib/infernal/infernal-current/src/cp9_mx.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/config.h.in rscape_v2.0.0.q/lib/infernal/infernal-current/src/hmmband.h rscape_v2.0.0.q/lib/infernal/infernal-current/src/cp9_dp.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/stats.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmstat.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_mx.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/prior.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_p7_domaindef.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_modelconfig.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_p7_band.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/truncyk_check.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/logsum.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_dpalign_trunc.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_dpsearch_trunc.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/plus1.prior rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmconvert.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_p7_modelmaker.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/mpisupport.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmalign.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/trcyk.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/rnamat.h rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmscan.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/truncyk.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_dpalign.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/sa-Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/src/sub_cm-test.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/src/stats.h rscape_v2.0.0.q/lib/infernal/infernal-current/src/eweight.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_trunc.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmbuild.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmpress.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/bandcyk-truncation-test.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_dispatch.h rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_p7_modelconfig_trunc.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmcalibrate.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/hmmband.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cm_alidisplay.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/errors.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/cmemit.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/cmsearch_dual rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/sse_cmsearch rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/sse_cmcons_mscyk.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/cm_optimized.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/sse_cmcons_hitmx.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/impl_sse.h rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/sse_cm_dpsearch.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/sse_cm_dpsmall.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/sse_cmsearch.c rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/src/impl_sse/sse_util.c rscape_v2.0.0.q/lib/infernal/infernal-current/confEtwbWz/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confEtwbWz/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confEtwbWz/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confEtwbWz/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confCwv4Kj/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confCwv4Kj/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confCwv4Kj/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-25.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-25.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-25.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-25.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-25.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-25.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM100-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-25.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-95.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-25.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-90.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM45-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM70-35.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-85.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM55-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM60-30.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-80.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-55.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-50.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-65.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM80-70.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM90-75.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM95-45.mat rscape_v2.0.0.q/lib/infernal/infernal-current/matrices/RIBOSUM85-40.mat rscape_v2.0.0.q/lib/infernal/infernal-current/conf6RxA7D/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf6RxA7D/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf6RxA7D/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf8QXony/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf8QXony/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf8QXony/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJNecFq/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJNecFq/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJNecFq/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confynug3i/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confynug3i/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confynug3i/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confxsZloR/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confxsZloR/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confxsZloR/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-idpositives.pl rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/x-rfamscan rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/x-cmsearch rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-multiply-evalues.pl rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-pp.sh rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-hitlist.pl rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/00README rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-create.c rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-po-pp.sh rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-Rroc.pl rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/x-nhmmer2cmsearch rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-mer.pl rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/x-blastn rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-time.pl rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/x-nhmmer rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark3-bg.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/x-blastall rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/x-wublast rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-rocplot.c rscape_v2.0.0.q/lib/infernal/infernal-current/rmark/rmark-master.pl rscape_v2.0.0.q/lib/infernal/infernal-current/confLLeSGy/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confLLeSGy/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confLLeSGy/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confLLeSGy/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf3CfqHu/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf3CfqHu/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf3CfqHu/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/conf3CfqHu/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confmZnGOb/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confmZnGOb/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confmZnGOb/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confmZnGOb/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnTBfs4/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnTBfs4/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnTBfs4/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confnTBfs4/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conffcM8CW/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conffcM8CW/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conffcM8CW/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/conffcM8CW/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf5SXiaW/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf5SXiaW/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf5SXiaW/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confuFKP4P/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confuFKP4P/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confuFKP4P/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQljyC6/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQljyC6/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQljyC6/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confQljyC6/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confflgA5I/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confflgA5I/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confflgA5I/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sse.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_regexp.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_exponential.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msashuffle.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_alphabet.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_random.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_stockholm.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_a2m.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_recorder.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gev.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_vmx.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_cluster.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_ssi.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_heap.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_hyperexp.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_mpi.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_wuss.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dmatrix.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_keyhash.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sq.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_mem.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stretchexp.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_getopts.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dsqdata.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/install-sh rscape_v2.0.0.q/lib/infernal/infernal-current/easel/configure.ac rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_regexp.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dirichlet.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sqio.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_randomseq.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_randomseq.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stopwatch.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/INSTALL rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_fileparser.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/interface_gsl.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_hmm.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_swat.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stopwatch.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_mpi.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/LICENSE rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gencode.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/LICENSE.sh.in rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stats.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_scorematrix.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/easel.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/configure rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_distance.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_histogram.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_composition.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gev.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_tree.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_weibull.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_paml.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_phylip.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_workqueue.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile2.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_tree.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_buffer.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sqio_ascii.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_hyperexp.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_weibull.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_vectorops.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_ratematrix.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msaweight.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_rootfinder.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sqio_ncbi.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_normal.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_mixgev.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_alphabet.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/00README rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_psiblast.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_selex.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msacluster.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_threads.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_minimizer.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dsqdata.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_swat.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_normal.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/interface_lapack.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_wuss.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gamma.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_cluster.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/config.guess rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gumbel.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_clustal.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dmatrix.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sqio.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stack.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_afa.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_histogram.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_config.h.in rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_buffer.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_scorematrix.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_random.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_vectorops.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_avx.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sse.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dirichlet.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_regexp.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stretchexp.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sq.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_mem.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_keyhash.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_getopts.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_ssi.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/config.sub rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_keyhash.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_vmx.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_recorder.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_stockholm.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_a2m.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gamma.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_heap.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_ssi.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_cluster.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sse.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_getopts.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_random.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_alphabet.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msashuffle.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_exponential.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_distance.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_paml.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_weibull.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_distance.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gev.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gumbel.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_composition.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_histogram.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_scorematrix.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_ratematrix.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stats.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gencode.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/easel.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/interface_gsl.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_mpi.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stopwatch.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_hmm.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_rootfinder.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sq.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sqio.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_randomseq.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_fileparser.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/makeTAGS.sh rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_mixgev.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stretchexp.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stack.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dirichlet.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msaweight.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sqio_ncbi.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_rootfinder.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_ratematrix.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msaweight.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msacluster.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_sqio_ascii.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_vectorops.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_fileparser.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_hyperexp.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_exponential.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_workqueue.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_paml.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_phylip.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_tree.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile2.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stats.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_buffer.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/easel.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_avx.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/aclocal.m4 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dmatrix.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_clustal.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gumbel.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_afa.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_stack.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/interface_lapack.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_normal.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/BUGTRAX rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_minimizer.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_wuss.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_gamma.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_psiblast.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile.md rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_dsqdata.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_threads.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_minimizer.h rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msacluster.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msafile_selex.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/a2m/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/psiblast/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/afa/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/clustal/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylips/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.bad.6 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.bad.8 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.bad.7 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.bad.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.bad.5 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.good.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.bad.4 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/stockholm/stockholm.bad.3 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylips/phylips.good.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylips/phylips.good.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/clustal/clustal.good.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/clustal/clustal.good.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/afa/afa.good.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/afa/afa.good.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/afa/afa.good.3 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/psiblast/psiblast.good.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/psiblast/psiblast.good.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/a2m/a2m.good.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/a2m/a2m.good.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.12 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.13 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.14 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.9 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.7 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.6 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.good.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.8 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.11 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.10 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.good.4 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.4 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.good.3 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.3 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.good.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/selex.bad.5 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/selex/00MANIFEST rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.11 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.10 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.good.3 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.4 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.3 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.good.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.5 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.ambig.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.9 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.7 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.6 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.bad.8 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/esl_msa_testfiles/phylip/phylip.good.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/esl-dependencies rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/ctags-fix rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/cexcerpt.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/autodoc rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/man2optlist rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/sedition-pp rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/00README rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/rmanprocess.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/cexcerpt rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/c2optlist rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/sqc rscape_v2.0.0.q/lib/infernal/infernal-current/easel/devkit/sedition rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/i2-ncbi-indices.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/trna-ssdraw.ps rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/e2.sh rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/i3-blank-gf.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/i1-degen-residues.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/valgrind_report.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/testsuite.sqc rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/trna-5.stk rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/easel/testsuite/coverage_report.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/fasta2profmark rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/blast2tbl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/demotic_infernal_tab.pm rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/demotic_blast.pm rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/00README rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/test.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/demotic_fasta.pm rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/hmmer2profmark rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/infernal_tab2gff.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/demotic_hmmer.pm rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/blast2profmark rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/h22tbl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/fasta2tbl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/h22profmark rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/demotic_h2.pm rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/hmmer2tbl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example-single.fa.pin rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example-single-psiquery.fa rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example-single.pbl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.hmmsearch.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example-single.fa.psq rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.fa rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.ssearch.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example-single.fa rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.sto rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.hmm2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example-single.asnt rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.psiblast.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example-single.sto rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.wu-blastp.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.fasta.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.h2.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.phmmer.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example-single.fa.phr rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/examples/example.ncbi-blastp.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/ssearch-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/hmmsearch-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/psiblast-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/h2-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/ncbi-blastp-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/wu-blastp-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/ncbi-blastp-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/wu-blastp-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/fasta-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/h2-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/fasta-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/phmmer-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/phmmer-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/ssearch-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/hmmsearch-profmark.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/demotic/regress/psiblast-tbl.out rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/fasta.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/wag.dat rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/BLOSUM62 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/fasta rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/fasta.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/fasta.bad.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/genbank.2 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/fasta.bad.3 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/embl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/uniprot rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/genbank rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/stockholm.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/genbank.bad.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/formats/fasta.odd.1 rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/copyright.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/intro.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/format_stockholm.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/typography.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/format_ncbi.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/macros.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/doctricks.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/install.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/main.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/format_wuss.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/format_a2m.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/ rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/codestyle.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/titlepage.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/installation.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/statistics.tex rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rnaseP-bsu-alignment.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rna_elements.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/evd_basic.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rna_elements.ai rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rnaseP-bsu-alignment.ai rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/evd_location.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/gev_density.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rnaseP-ecoli.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rnaseP-ecoli.eps rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rnaseP-ecoli.ai rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rnaseP-bsu-alignment.eps rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/evd_scale.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/gev_logdensity.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/easel/documentation/figures/rna_elements.eps rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-seqstat.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimask.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimanip.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimanip.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-shuffle.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-compalign.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-shuffle.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-histplot.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alipid.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimap.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alistat.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alirev.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-ssdraw.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-translate.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-seqrange.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimerge.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alistat.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-mask.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-reformat.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-histplot.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alirev.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimerge.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-seqrange.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-translate.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-shuffle.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-translate.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-compstruct.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimap.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimerge.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-compalign.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-construct.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-weight.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-ssdraw.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimask.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-construct.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-mask.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-sfetch.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alipid.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimask.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-seqstat.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-weight.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimap.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-selectn.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-seqrange.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-compalign.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-compstruct.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-cluster.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-construct.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-afetch.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alistat.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-ssdraw.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-selectn.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-reformat.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-afetch.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-afetch.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-sfetch.c rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-mask.man rscape_v2.0.0.q/lib/infernal/infernal-current/easel/miniapps/esl-alimanip.man rscape_v2.0.0.q/lib/infernal/infernal-current/conf5Hb4xz/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf5Hb4xz/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf5Hb4xz/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf5I9EzV/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf5I9EzV/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf5I9EzV/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/conf5I9EzV/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confVRJCB2/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confVRJCB2/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confVRJCB2/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confHrb3Ry/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confHrb3Ry/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confHrb3Ry/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confHrb3Ry/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSvHFBn/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSvHFBn/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSvHFBn/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confSvHFBn/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confFXsi42/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confFXsi42/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confFXsi42/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confohrnvD/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confohrnvD/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confohrnvD/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confk7Z4qU/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confk7Z4qU/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confk7Z4qU/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confk7Z4qU/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confwvOgUR/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confwvOgUR/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confwvOgUR/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf9hEQb9/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf9hEQb9/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf9hEQb9/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confiKs3SI/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confiKs3SI/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confiKs3SI/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJFG8XQ/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJFG8XQ/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJFG8XQ/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confG6gSBG/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confG6gSBG/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confG6gSBG/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confG6gSBG/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/install-sh rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/configure.ac rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/INSTALL rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/libdivsufsort/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/LICENSE rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/configure rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/config.guess rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/README.md rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/config.sub rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/makeTAGS.sh rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/aclocal.m4 rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/itest_brute.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_gmx.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmdutils.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmpgmd_client_example.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_tophits.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_fwdback_banded.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmscan.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/modelconfig.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_gmxchk.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_null2.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_alidisplay.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/evalues.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmemit.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_gbands.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_hmmcache.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/emit.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_gmxb.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmpress.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmbuild.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/cachedb.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/alimask.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/nhmmscan.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmpgmd.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_prior.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_scoredata.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_fwdback_chk.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/tracealign.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmpress.itest.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_builder.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_bg.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmer.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/seqmodel.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_decoding.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmalign.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/fm_alphabet.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_viterbi.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/h2_io.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/fm_sse.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_domaindef.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_fwdback_rescaled.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_spensemble.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmdmstr.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_hmmwindow.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_hmm.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/nhmmer.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/fm_general.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmdwrkr.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_msv.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmsim.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/fm_ssv.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmlogo.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/build.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/makehmmerdb.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/jackhmmer.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_pipeline.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_optacc.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/modelstats.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_config.h.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmc2.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/heatmap.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/logsum.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmstat.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_gmxchk.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/phmmer.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmsearch.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/generic_vtrace.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/mpisupport.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/cachedb.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmpgmd.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_gmxb.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_null3.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_trace.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_hmmcache.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_gbands.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmerfm-exactmatch.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/eweight.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmpgmd2msa.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmer.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_profile.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmconvert.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/errors.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/hmmfetch.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/p7_hmmfile.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/p7_oprofile.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/optacc.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/vitscore.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/io.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/decoding.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/msvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/impl_dummy.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/p7_omx.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/null2.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/vitfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_dummy/mpi.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/p7_oprofile.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/optacc.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/vitscore.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/io.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/decoding.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/msvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/impl_vmx.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/p7_omx.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/null2.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/vitfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/00MANIFEST rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_vmx/mpi.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/p7_oprofile.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/optacc.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/vitscore.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/io.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/decoding.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/msvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/fbparsers.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/ssvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/impl_sse.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/p7_omx.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/null2.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/p7_omx.ai rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/vitfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/00MANIFEST rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl_sse/mpi.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/libhmmer-impl.stamp rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/p7_oprofile.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/optacc.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/msvfilter.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/decoding.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/vitscore.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/fwdback.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/io.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/ssvfilter.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/Makefile rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/stotrace.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/vitfilter.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/p7_omx.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/null2.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/mpi.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/decoding.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/optacc.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/msvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/fbparsers.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/p7_oprofile.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/io.o rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/ssvfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/impl_sse.h rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/fwdback.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/p7_omx.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/null2.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/p7_omx.ai rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/vitfilter.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/stotrace.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/00MANIFEST rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/src/impl/mpi.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-h2-ls rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-psiblast+ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-h2-fs rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-single-ssearch rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/pmark-master.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-iterate-psiblast rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-fps-fasta rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/00README rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-fps-ssearch rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-phmmer-consensus rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/rocplot.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-single-phmmer rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-fps-ncbiblast+ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-hmmsearch rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-sam rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-iterate-jackhmmer rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/rocplot.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/pmark.param rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-fps-wublast rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/create-profmark.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-hmmsearch-max rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-fps-ncbiblast rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-fps-phmmer rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-single-ncbiblast rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/profmark/x-psiblast rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/RRM_1.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i15-hmmconvert.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i19-hmmpgmd-ga.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/2OG-FeII_Oxy_3.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/RRM_1.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/h3.pm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/XYPPX.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i8-nonresidues.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i7-hmmbuild-fragments.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i11-hmmalign-mapali.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i12-delete-corruption.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/XYPPX.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i2-search-variation.sh rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/ecori.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i18-nhmmer-generic.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/ecori.fa rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/20aa.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/3box.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/M1.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i14-hmmemit-consensus.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/2OG-FeII_Oxy_3-nt.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/PSE.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/minifam rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/PSE.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/rndseq400-10.fa rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/M1.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/testsuite.sqc rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/3box.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/20aa.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/ecori.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i3-seqsearch-variation.sh rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/LuxC.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/SMC_N.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/Caudal_act.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/PAX8_HUMAN rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i5-hmmbuild-naming.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/20aa-alitest.fa rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i17-stdin.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/Patched.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i1-build-variation.sh rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/Patched.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/test-make.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i4-zerolength-seqs.sh rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/Caudal_act.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i10-duplicate-names.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i6-hmmalign-mapali.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/SMC_N.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i20-fmindex-core.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i9-optional-annotation.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/LuxC.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i16-build-allins.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/testsuite/i13-msa-integrity.pl rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/libdivsufsort/AUTHORS rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/libdivsufsort/divsufsort.h.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/libdivsufsort/divsufsort.c rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/libdivsufsort/README rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/libdivsufsort/COPYING rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/libdivsufsort/VERSION rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/libdivsufsort/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/MADE1.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/Pkinase.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/globins4.out rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/Pkinase.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/dna_target.fa rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/MADE1.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/globins45.fa rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/minifam.h3p rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/minifam.h3m rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/fn3.out rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/fn3.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/minifam rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/fn3.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/MADE1.out rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/globins4.sto rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/minifam.h3f rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/globins4.hmm rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/7LESS_DROME rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/HBB_HUMAN rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/tutorial/minifam.h3i rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/ rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/tutorial.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/macros.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/install.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/main.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/tabular.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/copyright.tex.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/formats.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/introduction.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/titlepage.tex.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/more.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/glossary.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/pipeline.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/hmmbuild.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/userguide/ack.tex rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/nhmmscan.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/boilerplate-tail rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmpress.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmsearch.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmstat.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmscan.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/alimask.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmlogo.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmpgmd.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/makehmmerdb.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmfetch.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmconvert.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmer.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmalign.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/jackhmmer.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmemit.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/nhmmer.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmsim.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/phmmer.man rscape_v2.0.0.q/lib/infernal/infernal-current/hmmer/documentation/man/hmmbuild.man rscape_v2.0.0.q/lib/infernal/infernal-current/confwE21RQ/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confwE21RQ/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confwE21RQ/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confwE21RQ/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confbf64Mo/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confbf64Mo/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confbf64Mo/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnoagYa/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnoagYa/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnoagYa/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confnoagYa/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o1QQ/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o1QQ/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o1QQ/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o1QQ/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe1wOuo/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe1wOuo/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe1wOuo/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confRXCCZM/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confRXCCZM/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confRXCCZM/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confRXCCZM/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confRMOipF/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confRMOipF/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confRMOipF/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confuMFkO1/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confuMFkO1/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confuMFkO1/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confuMFkO1/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSMvbeY/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSMvbeY/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSMvbeY/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confLRy7ew/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confLRy7ew/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confLRy7ew/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf1Fw1Lr/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf1Fw1Lr/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf1Fw1Lr/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/conf1Fw1Lr/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confsosGnD/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confsosGnD/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confsosGnD/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSKgbc3/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSKgbc3/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confSKgbc3/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confKzKWbD/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confKzKWbD/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confKzKWbD/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confKzKWbD/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQX8ndt/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQX8ndt/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQX8ndt/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confCLl9xw/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confCLl9xw/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confCLl9xw/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confIBsNlI/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confIBsNlI/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confIBsNlI/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJ2QSDZ/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJ2QSDZ/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJ2QSDZ/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQTABmU/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQTABmU/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confQTABmU/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/emitted-5.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/rnaseP-frag.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tRNA.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest8-glist.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/trna.xmask rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i2.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/4.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i28.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tremitted-Vault.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/rnaseP-eubact.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i28.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/1k-snR75.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i2.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/at25.null rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/ffs-frag.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tRNA1415G.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i1.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tRNA1415G.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/se.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/10k-4.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest2-duplicate-names.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/emitted-4.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/RIBOSUM85-60.mat rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/5.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/srp-euk.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/emitted-snR75.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/4.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/se.rf.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i29.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tRNA.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest4-stdin.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/10k-Vault.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tRNA-Sec.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i43.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i14.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i30.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/4.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/snR75.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/at4.null rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest9-overlaps.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/vault.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i36.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i34.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/3trnas.embl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i43.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/4.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/100k-4.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/00README rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/trna-2.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/snR75.3.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest7-trunc.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i11.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i37.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/RNaseP.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/1k-tRNA.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tRNA.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/1k.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/test.hprior rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i44.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i33.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i15.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i31.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Plant_SRP.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Rfam.12.1.clanin rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i43.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i12.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i34.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i14.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/snR75.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i36.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/3trnas.gb rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/2accn.list rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest5-pipeline.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Vault.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Plant_SRP.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/1k-Vault.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/mito-ascaris.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Plant_SRP.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i32.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/1k-4.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/2name.list rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/se.noss.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/emitted-tRNA.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i31.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/dev_testsuite.sqc rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i33.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/se.1.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/testsuite.sqc rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i13.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i15.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/emitted-Vault.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i31.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/se.dbl.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i37.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/rnaseP-bsu.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/plus1.prior rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/srp-euk.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/2.list rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/rnaseP-eubact.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/10k-tRNA.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Vault.1p0.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tremitted-Plant_SRP.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i28.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Vault.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/5.claninfo rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/trna.list rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i38.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/PK-HAV.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest3-msa-integrity.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i15.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i29.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/mito-ascaris.gb rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Plant_SRP.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/tRNA.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest6-sensitivity.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/emitted-3pkhavs.fa rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/i1.pm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i39.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/bug-i14.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/snR75.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/snR75.1p0.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/itest1-cmalign-mapali.pl rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/3.4.12.rf.stk rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/ssu.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/Vault.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/se.sto rscape_v2.0.0.q/lib/infernal/infernal-current/testsuite/ffs-ecoli.fa rscape_v2.0.0.q/lib/infernal/infernal-current/confALneOC/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confALneOC/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confALneOC/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf8lyFnl/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf8lyFnl/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf8lyFnl/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confzcvnlo/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confzcvnlo/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confzcvnlo/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confzcvnlo/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confYNqqc6/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confYNqqc6/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confYNqqc6/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confYNqqc6/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conff3eQcn/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conff3eQcn/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conff3eQcn/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confTvMs5u/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confTvMs5u/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confTvMs5u/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o26H/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o26H/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o26H/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confe4o26H/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conffgmNMd/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conffgmNMd/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conffgmNMd/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/conffgmNMd/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJwbEav/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJwbEav/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJwbEav/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confxSpYvT/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confxSpYvT/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confxSpYvT/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf4DFcD8/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf4DFcD8/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf4DFcD8/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/conf4DFcD8/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confghhoz8/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confghhoz8/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confghhoz8/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJ5xsje/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJ5xsje/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confJ5xsje/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confsjUmYx/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confsjUmYx/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confsjUmYx/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confGnsmjD/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confGnsmjD/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confGnsmjD/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conff2pzNG/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conff2pzNG/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conff2pzNG/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/conff2pzNG/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confcpZFqp/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confcpZFqp/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confcpZFqp/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confcpZFqp/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confosnXfs/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confosnXfs/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confosnXfs/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/tRNA5.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/mrum-tRNAs10.out rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/minifam.cm rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/minifam.cm.i1i rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/tRNA5-hand.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/minifam.cm.i1f rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/tRNA5.sto rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/minifam-metag.out rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/tRNA5-mrum.out rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/Cobalamin.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/mrum-tRNAs10.fa rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/metag-example.fa rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/Cobalamin.fa rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/tRNA5-noss.sto rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/5S_rRNA.sto rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/mrum-genome.fa rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/minifam.cm.i1m rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/minifam.cm.i1p rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/tRNA5-hand.sto rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/Cobalamin.sto rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/orig_files/ rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/5S_rRNA.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/orig_files/toalign.1.fa rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/orig_files/toalign.5.fa rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/orig_files/tosearch.300Kb.db rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/orig_files/trna.5.sto rscape_v2.0.0.q/lib/infernal/infernal-current/tutorial/orig_files/toalign.1trunc.fa rscape_v2.0.0.q/lib/infernal/infernal-current/confDpbmr6/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confDpbmr6/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confDpbmr6/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/ rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/ rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/sse_cmsearch.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmemit.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmsearch_dual.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmpress.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/boilerplate.trailer rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/infernal.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmfetch.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmcalibrate.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmsearch.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmalign.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmstat.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmscan.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmconvert.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/cmbuild.man rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/manpages/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/copyright.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/apalike.sty rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/tutorial.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/format_prior.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/macros.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/install.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/main.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/local.bib rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/tabular.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/url.sty rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/formats.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/introduction.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/diffoptions.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/trna.5.c.cm rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/ rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/titlepage.tex.in rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/more.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/pipeline.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/cmbuild.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/rigfilters_doc.html rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Makefile.in rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/ack.tex rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/cm_graph.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purine3_small.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rnaseP-bsu-alignment.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rna_elements.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purine2_full.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purine3_full.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/trna1-DF6280.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/cm_graph.eps rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rna_elements.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purineC_small.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/cm_nodetree.eps rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/parsetrees.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purine2_small.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rnaseP-bsu-alignment.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/input_alignment.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purine.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/cm_nodetree.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rnaseP-ecoli.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/input_alignment.eps rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/trna1-DF6280.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purine1_full.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/parsetrees.eps rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purine1_small.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/cm_nodetree.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/input_alignment.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rnaseP-ecoli.eps rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rnaseP-ecoli.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/parsetrees.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rnaseP-bsu-alignment.eps rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/stl9-63.ai rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/cm_graph.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/trna1-DF6280.eps rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/trna1-DF6280-hand.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/purineC_full.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/stl9-63.pdf rscape_v2.0.0.q/lib/infernal/infernal-current/documentation/userguide/Figures/rna_elements.eps rscape_v2.0.0.q/lib/infernal/infernal-current/conf2y3ciu/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf2y3ciu/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf2y3ciu/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/conf2y3ciu/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confvGqHgm/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confvGqHgm/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confvGqHgm/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confVUTNmz/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confVUTNmz/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confVUTNmz/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confYW7RRG/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confYW7RRG/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confYW7RRG/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confYW7RRG/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf4xzbyp/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf4xzbyp/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/conf4xzbyp/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confKBgUgQ/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confKBgUgQ/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confKBgUgQ/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confrefDO0/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confrefDO0/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confrefDO0/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnPZyuY/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnPZyuY/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confnPZyuY/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confFGcaPC/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confFGcaPC/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confFGcaPC/subs.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confTTRDaM/subs1.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confTTRDaM/defines.awk rscape_v2.0.0.q/lib/infernal/infernal-current/confTTRDaM/config.h rscape_v2.0.0.q/lib/infernal/infernal-current/confTTRDaM/subs.awk rscape_v2.0.0.q/scripts/PDBFUNCS.pm rscape_v2.0.0.q/scripts/._rocplot_together.pl rscape_v2.0.0.q/scripts/rocplot_together.pl rscape_v2.0.0.q/scripts/rocplot.pl rscape_v2.0.0.q/scripts/FUNCS.pm rscape_v2.0.0.q/scripts/pdb_parse.pl rscape_v2.0.0.q/scripts/r2r_msa_comply.pl rscape_v2.0.0.q/logo/._R-scape.ico rscape_v2.0.0.q/logo/R-scape.ico rscape_v2.0.0.q/logo/._R-scape_logo_final_.ai rscape_v2.0.0.q/logo/R-scape_logo_final_.ai rscape_v2.0.0.q/logo/._R-scape_logo_final_.pdf rscape_v2.0.0.q/logo/R-scape_logo_final_.pdf rscape_v2.0.0.q/logo/._CaCoFold_09.24.20.pdf rscape_v2.0.0.q/logo/CaCoFold_09.24.20.pdf rscape_v2.0.0.q/autom4te.cache/traces.0 rscape_v2.0.0.q/autom4te.cache/output.0 rscape_v2.0.0.q/autom4te.cache/requests rscape_v2.0.0.q/python/R-scape_power.ipynb rscape_v2.0.0.q/tutorial/._3f2q.pdb rscape_v2.0.0.q/tutorial/3f2q.pdb rscape_v2.0.0.q/tutorial/RF00005.noss.sto rscape_v2.0.0.q/tutorial/RF00005.emptyss.sto rscape_v2.0.0.q/tutorial/._manA.sto rscape_v2.0.0.q/tutorial/manA.sto rscape_v2.0.0.q/tutorial/RF00005.sto rscape_v2.0.0.q/tutorial/RF00162_SAM.CaCoFold.sto rscape_v2.0.0.q/tutorial/updated_Arisong.sto rscape_v2.0.0.q/tutorial/ar14.sto rscape_v2.0.0.q/tutorial/RF00162_SAM.pk.sto rscape_v2.0.0.q/tutorial/RF00001-noss.sto rscape_v2.0.0.q/tutorial/RF00050.sto rscape_v2.0.0.q/tutorial/RF00050.afa rscape_v2.0.0.q/tutorial/._manA-oneseq.sto rscape_v2.0.0.q/tutorial/manA-oneseq.sto rscape_v2.0.0.q/documentation/._R-scape_userguide.pdf rscape_v2.0.0.q/documentation/R-scape_userguide.pdf phase `unpack' succeeded after 2.3 seconds starting phase `bootstrap' GNU build system bootstrapping not needed phase `bootstrap' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.9 seconds starting phase `patch-source-shebangs' patch-shebang: ./config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/FastTree/src/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/R-view/scripts/rview_test.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/src/octave/mkconstants.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/R2R/R2R-current/NotByZasha/nlopt-2.6.2/test/t_python.py: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./lib/R2R/R2R-current/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/R2R/R2R-current/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/R2R/R2R-current/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/R2R/R2R-current/demo/MetamakeDemos.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/R2R/R2R-current/depcomp: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/R2R/R2R-current/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/R2R/R2R-current/missing: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/R2R/R2R-current/src/SelectSubFamilyFromStockholm.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/R2R/R2R-current/src/SelectSubFamilyFromStockholm.pl~: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/autobuild/autobuild.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/autobuild/hmmer_autobuilds.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/config.status: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/documentation/userguide/inclusions/gen-inclusions.py: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./lib/hmmer/easel/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/easel/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/easel/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/easel/demotic/blast2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/blast2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/fasta2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/fasta2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/h22profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/h22tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/hmmer2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/hmmer2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/infernal_tab2gff.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/demotic/test.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/autodoc: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/c2optlist: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/cexcerpt: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/ctags-fix: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/man2optlist: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/rmanprocess.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/rmanprocess.py: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/sedition: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/sedition-pp: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/devkit/sqc: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/easel/makeTAGS.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/easel/miniapps/esl-afetch.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-alimanip.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-alimap.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-alimask.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-alimerge.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-alistat.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-compalign.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-construct.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-mask.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-seqrange.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-shuffle.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-shuffle.itest.py: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-ssdraw.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/miniapps/esl-translate.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/testsuite/coverage_report.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/testsuite/e2.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/easel/testsuite/i1-degen-residues.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/testsuite/i2-ncbi-indices.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/testsuite/i3-blank-gf.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/easel/testsuite/parse_test_results.py: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./lib/hmmer/easel/testsuite/valgrind_report.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/makeTAGS.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/profmark/pmark-master.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/rocplot.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-fps-fasta: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-fps-ncbiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-fps-ncbiblast+: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-fps-phmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-fps-ssearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-fps-wublast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-h2-fs: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-h2-ls: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-hmmsearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-hmmsearch-max: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-iterate-jackhmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-iterate-psiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-phmmer-consensus: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-psiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-psiblast+: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-sam: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-single-ncbiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-single-phmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/profmark/x-single-ssearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/src/hmmpgmd_client_example.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/src/hmmpress.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/component-benchmark.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/speed-master.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/speedA-list.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-fasta: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-hmmer2: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-hmmsearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-ncbiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-ncbiblast+: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-psiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-psiblast+: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-sam: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-ssearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/test-speed/x-wublast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/h3.pm: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i1-build-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/testsuite/i10-duplicate-names.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i11-hmmalign-mapali.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i12-delete-corruption.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i13-msa-integrity.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i14-hmmemit-consensus.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i15-hmmconvert.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i16-build-allins.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i17-stdin.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i18-nhmmer-generic.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i19-hmmpgmd-ga.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i2-search-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/testsuite/i20-fmindex-core.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i21-rewind.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i3-seqsearch-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/testsuite/i4-zerolength-seqs.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/hmmer/testsuite/i5-hmmbuild-naming.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i6-hmmalign-mapali.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i7-hmmbuild-fragments.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i8-nonresidues.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/i9-optional-annotation.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/hmmer/testsuite/parse_test_results.py: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/easel/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/easel/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/easel/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/blast2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/blast2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/fasta2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/fasta2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/h22profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/h22tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/hmmer2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/hmmer2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/infernal_tab2gff.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/demotic/test.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/autodoc: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/c2optlist: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/cexcerpt: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/ctags-fix: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/esl-dependencies: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/man2optlist: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/rmanprocess.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/sedition: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/sedition-pp: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/devkit/sqc: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/easel/makeTAGS.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-afetch.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimanip.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimap.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimask.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-alimerge.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-alistat.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-compalign.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-construct.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-mask.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-seqrange.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-shuffle.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-ssdraw.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/miniapps/esl-translate.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/testsuite/coverage_report.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/testsuite/e2.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/easel/testsuite/i1-degen-residues.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/testsuite/i2-ncbi-indices.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/testsuite/i3-blank-gf.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/easel/testsuite/valgrind_report.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/makeTAGS.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/pmark-master.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/rocplot.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-fasta: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-ncbiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-ncbiblast+: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-phmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-ssearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-fps-wublast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-h2-fs: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-h2-ls: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-hmmsearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-hmmsearch-max: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-iterate-jackhmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-iterate-psiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-phmmer-consensus: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-psiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-psiblast+: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-sam: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-single-ncbiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-single-phmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/profmark/x-single-ssearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/src/hmmpgmd_client_example.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/src/hmmpress.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/h3.pm: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i1-build-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i10-duplicate-names.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i11-hmmalign-mapali.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i12-delete-corruption.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i13-msa-integrity.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i14-hmmemit-consensus.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i15-hmmconvert.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i16-build-allins.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i17-stdin.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i18-nhmmer-generic.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i19-hmmpgmd-ga.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i2-search-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i20-fmindex-core.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i3-seqsearch-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i4-zerolength-seqs.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i5-hmmbuild-naming.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i6-hmmalign-mapali.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i7-hmmbuild-fragments.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i8-nonresidues.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/i9-optional-annotation.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/hmmer/testsuite/test-make.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/rmark-Rroc.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/rmark-hitlist.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/rmark-idpositives.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/rmark-master.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/rmark-mer.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/rmark-time.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/x-blastall: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/x-blastn: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/x-cmsearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/x-nhmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/x-nhmmer2cmsearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/x-rfamscan: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/rmark/x-wublast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/src/impl_sse/cmsearch_dual: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i1.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i11.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i12.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i13.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i14.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i15.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i28.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i29.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i30.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i31.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i32.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i33.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i34.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i36.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i37.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i38.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i39.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i43.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/bug-i44.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/i1.pm: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest1-cmalign-mapali.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest2-duplicate-names.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest3-msa-integrity.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest4-stdin.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest5-pipeline.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest6-sensitivity.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest7-trunc.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest8-glist.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-1.1.2/testsuite/itest9-overlaps.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/easel/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/easel/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/easel/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/easel/demotic/blast2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/blast2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/fasta2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/fasta2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/h22profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/h22tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/hmmer2profmark: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/hmmer2tbl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/infernal_tab2gff.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/demotic/test.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/autodoc: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/c2optlist: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/cexcerpt: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/ctags-fix: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/esl-dependencies: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/man2optlist: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/rmanprocess.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/sedition: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/sedition-pp: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/devkit/sqc: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/easel/makeTAGS.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-afetch.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-alimanip.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-alimap.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-alimask.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-alimerge.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-alistat.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-compalign.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-construct.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-mask.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-seqrange.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-shuffle.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-ssdraw.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/miniapps/esl-translate.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/testsuite/coverage_report.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/testsuite/e2.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/easel/testsuite/i1-degen-residues.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/testsuite/i2-ncbi-indices.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/testsuite/i3-blank-gf.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/easel/testsuite/valgrind_report.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/config.guess: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/config.sub: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/configure: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/makeTAGS.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/pmark-master.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/rocplot.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-fps-fasta: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-fps-ncbiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-fps-ncbiblast+: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-fps-phmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-fps-ssearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-fps-wublast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-h2-fs: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-h2-ls: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-hmmsearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-hmmsearch-max: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-iterate-jackhmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-iterate-psiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-phmmer-consensus: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-psiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-psiblast+: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-sam: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-single-ncbiblast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-single-phmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/profmark/x-single-ssearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/src/hmmpgmd_client_example.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/src/hmmpress.itest.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/h3.pm: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i1-build-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i10-duplicate-names.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i11-hmmalign-mapali.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i12-delete-corruption.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i13-msa-integrity.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i14-hmmemit-consensus.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i15-hmmconvert.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i16-build-allins.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i17-stdin.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i18-nhmmer-generic.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i19-hmmpgmd-ga.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i2-search-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i20-fmindex-core.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i3-seqsearch-variation.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i4-zerolength-seqs.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i5-hmmbuild-naming.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i6-hmmalign-mapali.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i7-hmmbuild-fragments.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i8-nonresidues.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/i9-optional-annotation.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/hmmer/testsuite/test-make.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/install-sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./lib/infernal/infernal-current/rmark/rmark-Rroc.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/rmark-hitlist.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/rmark-idpositives.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/rmark-master.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/rmark-mer.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/rmark-time.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/x-blastall: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/x-blastn: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/x-cmsearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/x-nhmmer: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/x-nhmmer2cmsearch: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/x-rfamscan: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/rmark/x-wublast: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/src/impl_sse/cmsearch_dual: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i1.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i11.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i12.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i13.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i14.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i15.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i28.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i29.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i30.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i31.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i32.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i33.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i34.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i36.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i37.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i38.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i39.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i43.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/bug-i44.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/i1.pm: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest1-cmalign-mapali.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest2-duplicate-names.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest3-msa-integrity.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest4-stdin.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest5-pipeline.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest6-sensitivity.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest7-trunc.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest8-glist.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./lib/infernal/infernal-current/testsuite/itest9-overlaps.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./scripts/pdb_parse.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./scripts/r2r_msa_comply.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./scripts/rocplot.pl: warning: no binary for interpreter `perl' found in $PATH patch-shebang: ./scripts/rocplot_together.pl: warning: no binary for interpreter `perl' found in $PATH phase `patch-source-shebangs' succeeded after 1.0 seconds starting phase `configure' source directory: "/tmp/guix-build-rscape-2.0.0.q.drv-0/rscape_v2.0.0.q" (relative from build: ".") build directory: "/tmp/guix-build-rscape-2.0.0.q.drv-0/rscape_v2.0.0.q" configure flags: ("CONFIG_SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash" "SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash" "--prefix=/gnu/store/yhq823zwg7xvbpw6z0kpj8yd1fgjdj37-rscape-2.0.0.q" "--enable-fast-install" "--build=aarch64-unknown-linux-gnu") configure: Configuring R-scape for your system. checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu configure: Full E2 source distribution - using full configuration checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking for a BSD-compatible install... /gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin/install -c checking how to run the C preprocessor... gcc -E checking for C compiler vendor... gnu checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for ranlib... ranlib checking for ar... /gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/bin/ar checking whether you have a GNU make... yes, you do; and we assume you will use it! ./configure: line 5386: AX_CC_MAXOPT: command not found checking for gcc option to produce PIC... -fPIC checking for gzip... /gnu/store/5g3pia8fi48qvaqhb0xqw1j5yrxfkpbm-gzip-1.13/bin/gzip checking for library containing clock_gettime... none required checking for grep that handles long lines and -e... /gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin/grep checking for egrep... /gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for sys/types.h... (cached) yes checking sys/sysctl.h usability... no checking sys/sysctl.h presence... no checking for sys/sysctl.h... no checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking whether byte ordering is bigendian... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for __attribute__((noreturn))... yes checking for mkstemp... yes checking for popen... yes checking for strcasecmp... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for stat... yes checking for fstat... yes checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating lib/FastTree/src/Makefile config.status: creating lib/R2R/R2R-current/src/Makefile config.status: creating lib/RNAVIEW/src/Makefile config.status: creating lib/hmmer/libdivsufsort/Makefile config.status: creating lib/hmmer/easel/Makefile config.status: creating lib/hmmer/Makefile config.status: creating lib/R-view/src/Makefile config.status: creating src/e2_config.h config.status: src/e2_config.h is unchanged config.status: creating src/rscape_config.h config.status: creating lib/R-view/src/rview_config.h config.status: creating lib/RNAVIEW/src/rnaview_config.h === configuring in lib/R2R/R2R-current (/tmp/guix-build-rscape-2.0.0.q.drv-0/rscape_v2.0.0.q/lib/R2R/R2R-current) configure: running /gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash ./configure --disable-option-checking '--prefix=/gnu/store/yhq823zwg7xvbpw6z0kpj8yd1fgjdj37-rscape-2.0.0.q' 'CONFIG_SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash' 'SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash' '--enable-fast-install' '--build=aarch64-unknown-linux-gnu' 'build_alias=aarch64-unknown-linux-gnu' --cache-file=/dev/null --srcdir=. checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... no checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for nlopt_create in -lnlopt... no configure: enable_cfsqp: no configure: flag_enable_nlopt: no configure: have_libnlopt: no checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for ranlib... ranlib checking for ar... /gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/bin/ar checking for sqrt in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin/grep checking for egrep... /gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes configure: creating ./config.status config.status: creating Makefile config.status: creating NotByZasha/infernal-0.7/squid/Makefile config.status: creating src/Makefile config.status: creating NotByZasha/cfsqp/Makefile config.status: creating NotByZasha/infernal-0.7/squid/squid.h config.status: creating src/r2rconf.h config.status: creating NotByZasha/infernal-0.7/squid/squidconf.h config.status: executing depfiles commands === configuring in lib/hmmer (/tmp/guix-build-rscape-2.0.0.q.drv-0/rscape_v2.0.0.q/lib/hmmer) configure: running /gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash ./configure --disable-option-checking '--prefix=/gnu/store/yhq823zwg7xvbpw6z0kpj8yd1fgjdj37-rscape-2.0.0.q' 'CONFIG_SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash' 'SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash' '--enable-fast-install' '--build=aarch64-unknown-linux-gnu' 'build_alias=aarch64-unknown-linux-gnu' --cache-file=/dev/null --srcdir=. configure: Configuring HMMER3 for your system. checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin/install -c checking for ranlib... ranlib checking for ar... /gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/bin/ar checking whether ln -s works... yes checking for C compiler vendor... gnu checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for a sed that does not truncate output... /gnu/store/8mapjfzb13assv6nd4kph3csvqydk6ym-sed-4.8/bin/sed checking for grep that handles long lines and -e... /gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin/grep checking for egrep... /gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... no configure: ::::::::::--- no vector instruction set ---:::::::::: configure: HMMER3 requires SSE or VMX vector instructions. configure: Supported platforms are x86 (Intel/AMD) and PowerPC. configure: error: No supported vectorization found for your machine. configure: error: ./configure failed for lib/hmmer error: in phase 'configure': uncaught exception: %exception #<&invoke-error program: "/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash" arguments: ("./configure" "CONFIG_SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash" "SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash" "--prefix=/gnu/store/yhq823zwg7xvbpw6z0kpj8yd1fgjdj37-rscape-2.0.0.q" "--enable-fast-install" "--build=aarch64-unknown-linux-gnu") exit-status: 1 term-signal: #f stop-signal: #f> phase `configure' failed after 13.9 seconds command "/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash" "./configure" "CONFIG_SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash" "SHELL=/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash" "--prefix=/gnu/store/yhq823zwg7xvbpw6z0kpj8yd1fgjdj37-rscape-2.0.0.q" "--enable-fast-install" "--build=aarch64-unknown-linux-gnu" failed with status 1 build process 18 exited with status 256